Last update:
Thu Feb 8 08:37:32 MST 2024
Robert Rosen On the dynamical realization of $ (M, R)
$-systems . . . . . . . . . . . . . . . 1--9
Michael A. Fox Some thoughts on the requirements for a
theory of biology . . . . . . . . . . . 11--17
M. Valentinuzzi, M.D., M.Sc. and
M. E. Valentinuzzi, E.E., Ph.D. Newman's chamber models in the study of
blood circulation through the liver and
heart . . . . . . . . . . . . . . . . . 19--29
Freeman W. Cope Piezoelectricity and pyroelectricity as
a basis for force and temperature
detection by nerve receptors . . . . . . 31--41
Michael A. B. Deakin On the status of mean fitness
maximization as a governing principle in
evolution . . . . . . . . . . . . . . . 43--50
Vojtech Li\vcko Threshold secretory mechanism: a model
of derivative element in biological
control . . . . . . . . . . . . . . . . 51--58
John Z. Hearon Distribution of conserved species in
diffusion-reaction systems . . . . . . . 59--67
Peter B. Bright The volumes of some compartment systems
with sampling and loss from one
compartment . . . . . . . . . . . . . . 69--79
Clifford S. Patlak An approximation diffusion equation for
a long narrow channel with varying
cross-sectional area . . . . . . . . . . 81--86
Hugo M. Martinez and
Robert M. Baer The algorithmic nature of a
reaction--diffusion development process 87--94
I. W. Richardson Bi-ionic flows through a single
homogeneous membrane . . . . . . . . . . 95--100
Franklin F. Offner The excitable membrane-biophysical
theory and experiment . . . . . . . . . 101--107
John M. Reiner Molecular biology and the kinetics of
cell growth. II. A note on mass--volume
relations . . . . . . . . . . . . . . . 109--113
H. D. Landahl On the mechanism of transport of proline
in the ciliary body, optic nerve and
choroid plexus . . . . . . . . . . . . . 115--127
S. R. Bernard Estimates of microcurie-days residence,
bone dose equivalent, and (MPC)$_W$ for
thorium-232 in man using a mammillary
model . . . . . . . . . . . . . . . . . 129--147
George Karreman Towards a physical understanding of
physiological excitation as a
cooperative specific adsorption
phenomenon . . . . . . . . . . . . . . . 149--171
Anthony F. Bartholomay Mathematical medicine, an introductory
discussion of its meaning and
significance in medicine and medical
education . . . . . . . . . . . . . . . 173--182
John L. Stephenson Transient behavior of the single loop
solute cycling countercurrent multiplier 183--194
H. R. van der Vaart A comparative investigation of certain
difference equations and related
differential equations: Implications for
model-building . . . . . . . . . . . . . 195--211
I. B\uaianu Some algebraic properties of $ (M, R)
$-systems . . . . . . . . . . . . . . . 213--217
David Sugerman and
Hiram E. Hart Thermal dissociation of
antigen--antibody--antigen-like systems 219--235
J. G. Defares and
M. E. Wise Theory of the measurement of arterial
compliance in humans . . . . . . . . . . 237--244
Aldo Rescigno and
Lester Michels Compartment modeling from tracer
experiments . . . . . . . . . . . . . . 245--257
Thomas A. Easton, Ph.D. A note on the mathematics of microsphere
division . . . . . . . . . . . . . . . . 259--262
A. K. Thakur and
A. Rescigno and
D. E. Schafer On the stochastic theory of
compartments: II. Multi-compartment
systems . . . . . . . . . . . . . . . . 263--271
Anonymous Announcement . . . . . . . . . . . . . . 273--273
Anonymous Aims and Goals of the \booktitleSociety 274--274
Anonymous Aims and Goals of the \booktitleSociety 274--274
P. J. Palatt and
G. M. Saidel An analysis of countercurrent exchange
with emphasis on renal function . . . . 275--286
Akira Kamiya, M.D. and
Tatsuo Togawa, Ph.D. Mathematical analysis of circulatory
mixing process . . . . . . . . . . . . . 287--300
Tai Te Wu The structure of DNA as deduced from
fiber X-ray crystallography . . . . . . 301--311
M. E. S. Philippe Smets, M.D. A note on knowledge and unpleasantness 313--317
C. Hyver Réactions chimiques couplées considerées en
tant que filtres passe-bande. (French)
[Coupled chemical reactions considered
as bandpass filters] . . . . . . . . . . 319--337
N. Rashevsky Organismic sets. Scientific creativity,
its spread and applications . . . . . . 339--344
Burkhart Fischer A neuron field theory: Mathematical
approaches to the problem of large
numbers of interacting nerve cells . . . 345--357
Ling Y. Wei Quantum theory of time-varying
stimulation in nerve . . . . . . . . . . 359--374
Alan Y. K. Wong, Ph.D. Some proposals in cardiac muscle
mechanics and energetics . . . . . . . . 375--399
Robert Plonsey, Ph.D. The effect of the torso boundary in
electrocardiography . . . . . . . . . . 401--405
Stewart McGavin An attitude to nucleic acid models . . . 407--409
H. R. Wilson Nucleic acid structure . . . . . . . . . 411--413
Michael A. B. Deakin On Gompertz curves . . . . . . . . . . . 415--415
M. H. Sherebrin Reorientation of membrane dipoles during
nerve excitation . . . . . . . . . . . . 417--418
Anonymous Announcement . . . . . . . . . . . . . . 419--419
Anonymous Announcement . . . . . . . . . . . . . . 419--419
N. Rashevsky The diffusion and metabolic differences
between soma and axon of a neuron . . . 421--429
Paul J. Palatt and
Gerald M. Saidel Countercurrent exchange in the inner
renal medulla: Vasa recta-descending
limb system . . . . . . . . . . . . . . 431--447
A. Bezerra Coutinho and
F. A. Bezerra Coutinho Snail population in running water . . . 449--458
C. Hyver Filtres passe-bande chimiques et
oscillations non periodiques. (French)
[Chemical bandpass filters and
non-periodic oscillations] . . . . . . . 459--466
Pierre Delsemme and
H. Westcott Vayo Forced vibrations of a circular muscle
ring . . . . . . . . . . . . . . . . . . 467--474
Ion Bâianu and
Drago\cs Scripcariu On adjoint dynamical systems . . . . . . 475--486
G. P. Henderson and
V. B. Cervin Statistical theory of persuasion in
tripartite negotiations . . . . . . . . 487--494
I. Mirsky Pulse velocities in cylindrical, tapered
and curved anisotropic elastic arteries 495--511
John Blake Flow in tubules due to ciliary activity 513--523
Ludwig Nastansky and
Stanley M. Selkow and
Neil F. Stewart The enumeration of minimal phylograms 525--533
Anthony F. Bartholomay Some mathematical aspects of the
diagnostic process. II: a mathematical
model of electrocardiographic diagnosis 535--547
Dhanjoo N. Ghista and
Sung-Cheng Huang and
Meyer Resnikoff A method for simultaneous determination
of (I) the blood flows to the organs and
(II) the cardiac output . . . . . . . . 549--563
D. G. Moisescu Interfilament forces in striated muscle 565--575
Ahferom Tesfagaber and
Marshall M. Lih Particle distribution for dilute
suspension in flow . . . . . . . . . . . 577--589
Ronald J. Spiegel and
William T. Joines A semiclassical theory for nerve
excitation by a low intensity
electromagnetic field . . . . . . . . . 591--605
Herbert W. Hethcote Asymptotic behavior in a deterministic
epidemic model . . . . . . . . . . . . . 607--614
Jerome A. Kharasch A morphogenetic system matched to a
group . . . . . . . . . . . . . . . . . 615--625
Freeman W. Cope Electron-phonon (trapped photon)
coupling and infrared coaxial
transmission line theory of energy
transport in mitochondria and nerve . . 627--644
Paul Cull and
Andrew Vogt Mathematical analysis of the asymptotic
behavior of the Leslie population matrix
model . . . . . . . . . . . . . . . . . 645--661
Michael W. Ovenden and
Archie E. Roy Disseminated storage of information with
sequential coding . . . . . . . . . . . 663--688
Jane Cronin The Danziger--Elmergreen theory of
periodic catatonic schizophrenia . . . . 689--707
N. Rashevsky The epileptic neuron: I . . . . . . . . 709--714
N. Rashevsky The epileptic neuron: II . . . . . . . . 1--16
Silverio P. Almeida and
James D. Bond and
Thomas C. Ward Electrically induced phase transitions
via the dipole model in excitable
membranes . . . . . . . . . . . . . . . 17--28
F. A. B. Coutinho and
A. B. Coutinho Dynamics of populations of
\bionameBiomphalaria glabrata and the
Von Forerster equation . . . . . . . . . 29--37
B. E. Morgan and
D. F. Young An intergral method for the analysis of
flow in arterial stenoses . . . . . . . 39--53
J. G. Lenard A note on the shape of the erythrocyte 55--58
Oscar A. Gómez-Poviña and
Carmen Sainz de Calatroni and
Susana Orden de Puhl and
Mariano J. Guerrero Continuous determination of the volume
of a space in a non steady state
condition . . . . . . . . . . . . . . . 59--66
Hedley C. Morris The Kerner linearization method . . . . 67--76
F. v. Palmay and
E. J. Davison and
J. Duffin The simulation of multi-neurone
networks: Modelling of the lateral
inhibition of the eye and the generation
of respiratory rhythm . . . . . . . . . 77--89
John V. Huddleston and
Charles G. DeWald and
Hanasoge N. Jagadeesh A dynamic model of an environmental
system with $n$ interacting components
and $p$ degrees of freedom . . . . . . . 91--96
John Z. Hearon A note on open linear systems . . . . . 97--99
I. W. Richardson Introduction to Mathematics for Life
Scientists . . . . . . . . . . . . . . . 101--102
I. Mirsky Pulse velocities in cylindrical, tapered
and curved anisotropic elastic arteries 103--103
Hsu-Chi Yeh Use of a heat transfer analogy for a
mathematical model of respiratory tract
deposition . . . . . . . . . . . . . . . 105--116
George Karreman and
Lee Levitt Isotherms for $r$ species adsorbed at
linear polymers with nearest neighbor
cooperative interaction . . . . . . . . 117--126
T. K. Mittra and
S. N. Prasad Interaction of peristaltic motion with
Poiseuille flow . . . . . . . . . . . . 127--141
J. J. Fredberg Pseudo-sound generation at
atherosclerotic constrictions in
arteries . . . . . . . . . . . . . . . . 143--155
Barry Bunow Enzyme kinetics in cells . . . . . . . . 157--169
S. Kauffman Measuring a mitotic oscillator: The ARC
discontinuity . . . . . . . . . . . . . 171--182
Hugo M. Martinez and
Gunnar Carlsson Genetic nets and dissipative structures:
an algebraic approach . . . . . . . . . 183--196
Howard D. Thames, Jr. Stability and enzyme separation:
Integral representation of the solutions 197--203
Jack S. Turner Finite fluctuations and multiple steady
states far from equilibrium . . . . . . 205--213
Charles Walter The global asymptotic stability of
prey--predator systems with second-order
dissipation . . . . . . . . . . . . . . 215--217
John P. Mullooly Stochastic kinetic models for small
irreversible systems . . . . . . . . . . 219--227
Ling Y. Wei and
B. Y. Woo Semiconductor theory of ion transport in
thin lipid membranes: I. Potential and
field distributions . . . . . . . . . . 229--246
B. Y. Woo and
Ling Y. Wei Semiconductor theory of ion transport in
thin lipid membranes: II. Surface
recombination . . . . . . . . . . . . . 247--264
Elinor Miller Levy Flagellar elongation as a moving
boundary problem . . . . . . . . . . . . 265--273
M. R. Davidson and
J. M. Fitz-Gerald Transport of O$_2$ along a model pathway
through the respiratory region of the
lung . . . . . . . . . . . . . . . . . . 275--303
Peter Purdue Stochastic theory of compartments . . . 305--309
Akira Kamiya and
Tatsuo Togawa and
Atsuko Yamamoto Theoretical relationship between the
optimal models of the vascular tree . . 311--323
Edgar M. Palmer and
Robert W. Robinson On the number of phenotype structures in
genetic systems . . . . . . . . . . . . 325--338
K. N. Leibovic Information Processing in the Visual
Systems of Arthropods . . . . . . . . . 339--340
John V. Huddleston Optimality in the control of
environmental systems . . . . . . . . . 341--345
Jagannathan Gomatam A new model for interacting populations
--- I: Two-species systems . . . . . . . 347--353
Jagannathan Gomatam A new model for interacting populations
--- II: Principle of competitive
exclusion . . . . . . . . . . . . . . . 355--364
L. I. Rubinstein Passive transfer of low-molecular
nonelectrolytes across deformable
semipermeable membranes --- I: Equations
of convective-diffusion transfer of
nonelectrolytes across deformable
membranes of large curvature . . . . . . 365--377
H. M. Geiman and
L. I. Rubinstein Passive transfer of low-molecular
nonelectrolytes across deformable
semi-permeable membranes --- II:
Dynamics of a single muscle fiber
swelling and shrinking and related
changes of the $T$-system tubule form 379--401
H. G. Klinger Heat transfer in perfused biological
tissue --- I: General theory . . . . . . 403--415
C. Biémont and
A. R. Bouffette and
J. Bouffette Théorie chromosimique de l'inbreeding:
Mod\`ele probabiliste. (French)
[Chromosimal theory of inbreeding:
Probabilistic model] . . . . . . . . . . 417--434
W. J. Shack and
T. J. Lardner A long wavelength solution for a
microorganism swimming in a channel . . 435--444
J. H. Matis and
M. Cardenas and
R. L. Kodell On the probability of reaching a
threshold in a stochastic mammillary
system . . . . . . . . . . . . . . . . . 445--454
Leslie E. Blumenson Mathematical models of conception and
birth . . . . . . . . . . . . . . . . . 455--456
E. A. Marshall and
E. A. Trowbridge Flow of a Newtonian fluid through a
permeable tube: The application to the
proximal renal tubule . . . . . . . . . 457--476
Edward H. Kerner Why are there so many species? . . . . . 477--488
M. Cardenas and
J. H. Matis On the stochastic theory of
compartments: Solution for
$n$-compartment systems with
irreversible, time-dependent transition
probabilities . . . . . . . . . . . . . 489--504
T. R. Hennessy The interaction of diffusion and
perfusion in homogeneous tissue . . . . 505--526
David H. Staley and
William R. Holt and
William N. Cannon, Jr. Necessary and sufficient condition for a
model insect population to go to
extinction . . . . . . . . . . . . . . . 527--533
F. Ventriglia Kinetic approach to neural systems: I 535--544
Ralph L. Levine and
John E. Hunter and
Peter L. Borchelt Dustbathing as a regulatory mechanism 545--553
W. J. Shack and
C. S. Fray and
T. J. Lardner Observations on the hydrodynamics and
swimming motions of mammalian
spermatozoa . . . . . . . . . . . . . . 555--565
Sòren Lòvtrup and
Björn von Sydow D'Arcy Thompson's theorems and the shape
of the molluscan shell . . . . . . . . . 567--575
Peter Purdue Stochastic theory of compartments: One
and two compartment systems . . . . . . 577--587
Gerald Rosen Bounds on the total particle number for
species governed by reaction--diffusion
equations in the infinite spatial domain 589--593
John M. Reiner Molecular control systems: I ---
Temporal organization in cells revisited 595--599
H. D. Landahl Note on oscillations of turbidity in a
precipitation reaction system of
thyroxine . . . . . . . . . . . . . . . 601--604
David Haberman On knowledge and unpleasantness . . . . 605--605
Per-Erik E. Bergner Stochastic processes and applications in
biology and medicine. Part 1 --- Theory.
Part 2 --- Models . . . . . . . . . . . 607--610
Michael A. B. Deakin Stabilité structurelle et morphogén\`ese.
(French) [Structural stability and
morphogenesis] . . . . . . . . . . . . . 611--613
Anatol Rapoport Matematicheskie problemy v biologii.
(Russian) [Mathematical problems of
biology] . . . . . . . . . . . . . . . . 615--616
Anonymous The University of Texas Health Science
Center at Houston, Division of
Continuing Education and The Region V of
IEEE announces Eleventh Symposium on
Biomathematics and Computer Science in
the Life Sciences . . . . . . . . . . . 617--617
C. Hyver Existence de résonances paramétriques dans
des syst\`emes de transformation d'intérêt
biologique. (French) [Existence of
parametric resonances in transformation
systems of biological interest] . . . . 1--9
H. D. Landahl and
B. D. Hansen A three stage population model with
cannibalism . . . . . . . . . . . . . . 11--17
B. Min and
W. Welkowitz and
S. Fich and
D. Jaron and
A. Kantrowitz Dynamic optimization of in-series
cardiac assistance by means of
intra-aortic balloon pumping . . . . . . 19--35
A. R. Bouffette and
C. Biémont and
J. Bouffette Comparaison des croisements au hasard,
pr\`ere-s\oeur et demi fr\`ere-s\oeur
par le coefficient de dépression.
(French) [Comparison of random
crossings, sister-in-law and half
sibling-sister by the coefficient of
depression] . . . . . . . . . . . . . . 37--49
Aurel I. Popescu and
Alexandra A. Popescu A model of a physico--chemical coupling
of biological interest . . . . . . . . . 51--57
Robert M. Baer Self-assembly and differentiation as
models of computability . . . . . . . . 59--69
Gerald Rosen and
Richard G. Fizell Bounds on the total population for
species governed by reaction--diffusion
equations in arbitrary two-dimensional
regions . . . . . . . . . . . . . . . . 71--78
Freeman W. Cope Kinetics of light emission by
photosynthetic systems: Second order
light decay kinetics means Elovich
kinetics in a solid state reaction; 1.5
order light decay kinetics means second
order reaction kinetics . . . . . . . . 79--83
Irving Fatt Flow and diffusion in the vitreous body
of the eye . . . . . . . . . . . . . . . 85--90
Michael A. B. Deakin A standard form for the
Kermack--McKendrick epidemic equations 91--95
W. Chiou Treatment of singularity for spatial
transfer properties of human visual
system at threshold . . . . . . . . . . 97--100
J. J. Blum and
Otto E. Rössler and
Robert Rosen Book Reviews . . . . . . . . . . . . . . 101--107
Anonymous Conference on Formal Languages, Automata
and Development . . . . . . . . . . . . 109--109
J. J. Fredberg Pseuod-sound generation at
atherosclerotic constrictions in
arteries . . . . . . . . . . . . . . . . 111--111
George Karreman Anthony Francis Bartholomay . . . . . . i--ii
M. R. Davidson Lung gas mixing during expiration
following an inspiration of air . . . . 113--126
John P. Mullooly Stochastic kinetic models for small
reversible systes; The equilibrium
distribution . . . . . . . . . . . . . . 127--138
Ranabir Dutt and
P. K. Ghosh and
B. B. Karmakar Application of perturbation theory to
the nonlinear Volterra--Gause--Witt
model for prey--predator interaction . . 139--146
Shui-Nan Chuang and
Harris H. Lloyd Mathematical analysis of cancer
chemotherapy . . . . . . . . . . . . . . 147--160
Michael R. Clark and
V. V. Krishnan and
Lawrence Stark Inners and biocontrol models . . . . . . 161--180
Otto E. Rössler A multivibrating switching network in
homogeneous kinetics . . . . . . . . . . 181--192
Peter H. Richter Stochastic theory of a selection game 193--213
Robert Rosen Organismic sets: Some reflections on the
nature of life and society . . . . . . . 215--218
Anonymous The Society for Mathematical Biology
announces Central Regional Meeting . . . 219--219
Anonymous Employment page . . . . . . . . . . . . 220--220
M. A. B. Deakin Errata . . . . . . . . . . . . . . . . . 221--221
J. Philip Ryan Aspects of the Clausius--Shannon
Identity: Emphasis on the components of
transitive information in linear,
branched and composite physical systems 223--254
John M. Reiner Theory of RNA--DNA hybridization --- I.
Stoichiometry at equilibrium . . . . . . 255--268
Peter Purdue Stochastic theory of compartments: an
open, two compartment, reversible system
with independent Poisson arrivals . . . 269--275
Gerald Rosen Solutions to systems of nonlinear
reaction--diffusion equations . . . . . 277--289
Donald L. De Angelis Estimates of predator--prey limit cycles 291--299
F. R. L. Cantraine and
B. Dewandre Kinetics of the thyroid follicle lumen
diffusion subsystem: Application to
iodide accumulation by the thyroid
follicle in vitro . . . . . . . . . . . 301--321
J. F. G. Auchmuty and
G. Nicolis Bifurcation analysis of nonlinear
reaction--diffusion equations --- I.
Evolution equations and the steady state
solutions . . . . . . . . . . . . . . . 323--365
A. Oaten and
C. E. M. Pearce and
M. E. B. Smyth Batesian mimicry and signal detection
theory . . . . . . . . . . . . . . . . . 367--387
P. M. Allen Darwinian evolution and a predator--prey
ecology . . . . . . . . . . . . . . . . 389--405
Theodosios Pavlidis Biological clock mutants and parameter
changes in mathematical models . . . . . 407--417
Sorin Comorosan On a possible biological spectroscopy 419--425
E. J. Davison Simulation of cell behavior: Normal and
abnormal growth . . . . . . . . . . . . 427--458
R. N. Das and
V. Seshadri A semi-empirical model for flow of blood
and other particulate suspensions
through narrow tubes . . . . . . . . . . 459--470
Joseph C. F. Chow Blood flow: Theory, effective viscosity
and effects of particle distribution . . 471--488
Julius Melbin and
R. Gopalakrishnan and
Abraham Noordergraaf Three dimensional laminar flow in
distorting, axisymmetric, axially
varying vessels . . . . . . . . . . . . 489--504
M. Cardenas and
J. H. Matis On the time-dependent reversible
stochastic compartmental model --- I.
The general two-compartment system . . . 505--519
Mothiram K. Patil and
Dhanjoo N. Ghista Construction, simulation, clinical
application and sensitivity analyses of
a human left ventricular control system
model . . . . . . . . . . . . . . . . . 521--553
M. Cardenas and
J. H. Matis On the time-dependent reversible
stochastic compartmental model --- II. A
class of $n$-compartment systems . . . . 555--564
Carlos A. Leguizamón Concept of energy in biological systems 565--572
W. Perl and
N. A. Lassen and
R. M. Effros Matrix proof of flow, volume and mean
transit time theorems for regional and
compartmental systems . . . . . . . . . 573--588
M. Herschkowitz-Kaufman Bifurcation analysis of nonlinear
reaction--diffusion equations --- II.
Steady state solutions and comparison
with numerical simulations . . . . . . . 589--636
A. Babloyantz and
J. Hiernaux Models for cell differentiation and
generation of polarity in
diffusion-governed morphogenetic fields 637--657
G. W. Swan Some strategies for harvesting a single
species . . . . . . . . . . . . . . . . 659--673
Carlos A. Leguizamón A theory for environmental systems . . . 675--689
G. W. Swan Solution of linear one-dimensional
diffusion equations . . . . . . . . . . 1--13
B. L. Jones and
R. H. Enns and
S. S. Rangnekar On the theory of selection of coupled
macromolecular systems . . . . . . . . . 15--28
J. P. Biscar Photon enzyme activation . . . . . . . . 29--38
Michael R. Clark and
Lawrence Stark Sensitivity of control parameters in a
model of saccadic eye tracking and
estimation of resultant nervous activity 39--57
Chyuan-Yih Lee and
Chun Chiang Nerve excitations by the coupling of the
dipoles and the membrane matrix . . . . 59--70
H. N. Mayrovitz and
M. P. Wiedeman and
A. Noordergraaf Analytical characterization of
microvascular resistance distribution 71--82
N. Anderson and
A. M. Arthurs Extremum principles and the elastic and
fluid mechanical behaviour of the human
eye . . . . . . . . . . . . . . . . . . 83--86
Robert Rosen Hysteresis in systems with a single
steady state . . . . . . . . . . . . . . 87--92
J. P. Biscar A possible explanation of the Comorosan
effects . . . . . . . . . . . . . . . . 93--94
Gerald Rosen The mathematical theory of diffusion and
reaction in permeable catalysts . . . . 95--96
P. Yodzis The effects of harvesting on competitive
systems . . . . . . . . . . . . . . . . 97--109
Freeman W. Cope Derivation of the Weber--Fechner law and
the Loewenstein equation as the
steady-state response of an Elovich
solid state biological system . . . . . 111--118
D. Bonchev and
D. Kamenski and
V. Kamenska Symmetry and information content of
chemical structures . . . . . . . . . . 119--133
C. K. Kang and
A. C. Eringen The effect of microstructure on the
rheological properties of blood . . . . 135--159
Eduardo Mon and
James S. Ultman Monte Carlo simulation of simultaneous
gas flow and diffusion in an asymmetric
distal pulmonary airway model . . . . . 161--192
Gerald Rosen Construction of analytically solvable
models for interacting species . . . . . 193--197
John Z. Hearon Properties of the Leslie population
matrix . . . . . . . . . . . . . . . . . 199--203
G. W. Swan Reduction of model for the spread of
cancer in the uterus; arbitrary specific
growth rate . . . . . . . . . . . . . . 205--207
Hugo M. Martinez and
Harold J. Morowitz and
Leslie E. Blumenson Book review . . . . . . . . . . . . . . 209--217
William H. Warner and
Theodore A. Wilson Distribution of end-points of a
branching network with decaying branch
length . . . . . . . . . . . . . . . . . 219--237
I. Mirsky and
R. F. Janz and
B. R. Kubert and
B. Korecky and
G. C. Taichman Passive elastic wall stiffness of the
left ventricle: A comparison between
linear theory and large deformation
theory . . . . . . . . . . . . . . . . . 239--251
Burkhart Fischer and
Jürgen Krüger Mathematical principles in afferent
visual neurons: Differentiation,
integration and transient
proportionality related to receptive
fields and shift-effect . . . . . . . . 253--267
S. H. Lin Oxygen tension in the in vivo cornea . . 269--275
C. Hodson and
L. Y. Wei Comparative evaluation of quantum theory
of nerve excitation . . . . . . . . . . 277--293
Derek F. Stubbs and
Phillip I. Good Connectivity in random networks . . . . 295--304
Keith Horsfield Some mathematical properties of
branching trees with application to the
respiratory system . . . . . . . . . . . 305--315
Paul Cull and
Andrew Vogt The period of total population . . . . . 317--319
Sòren Lòvtrup and
Björn von Sydow An addendum to ``D'Arcy Thompson's
theorems and the shape of the molluscan
shell'' . . . . . . . . . . . . . . . . 321--322
E. A. Thompson The genetic structure of populations,
biomathematics . . . . . . . . . . . . . 323--324
J. F. G. Auchmuty and
G. Nicolis Bifurcation analysis of
reaction--diffusion equations --- III.
Chemical oscillations . . . . . . . . . 325--350
Yöji Aizawa and
Yonosuke Kobatake A theory of oscillatory instability in
two-state systems in relation to nerve
excitation . . . . . . . . . . . . . . . 351--358
L. E. Bobisud Cannibalism as an evolutionary strategy 359--368
A. Shitzer and
M. K. Kleiner Thermal behavior of biological tissues
--- A general analysis . . . . . . . . . 369--386
T. W. Melnyk and
I. W. Richardson and
A. A. Simpson and
William R. Smith Hypothalamic regulation of pituitary
secretion of luteinizing hormone . . . . 387--400
R. F. Janz and
R. J. Waldron Some implications of a constant fiber
stress hypothesis in the diastolic left
ventricle . . . . . . . . . . . . . . . 401--413
Tron F. Thingstad On the connection between bacterial
growth and division . . . . . . . . . . 415--423
Arthur R. Copeland Axonal transport --- I. Diffusion . . . 425--433
Arthur R. Copeland Axonal transport --- II. Convection . . 435--444
John V. Huddleston The fitting of dynamic models to
observed data . . . . . . . . . . . . . 445--452
N. MacDonald Application of the describing function
to the Danziger--Elmergreen equations 453--458
Ranabir Dutt Application of Hamilton--Jacobi theory
to the Lotka--Volterra oscillator . . . 459--465
J. H. Matis and
R. L. Kodell and
M. Cardenas A note on the use of a stochastic
mammillary compartmental model as an
environmental safety model . . . . . . . 467--478
I. W. Richardson and
S. Miekisz A dynamical field theory for dissipative
thermal systems. The first and second
laws of irreversible thermodynamics . . 479--496
Chun Chiang A theory of ambiguous pattern perception 497--504
E. T. Lee Algorithms for finding most dissimilar
images with possible applications to
chromosome classification . . . . . . . 505--516
N. Yamamura A mathematical approach to spatial
distribution and temporal succession in
plant communities . . . . . . . . . . . 517--526
J. P. Meyer and
M. D. Kostin Diffusion through a membrane: Approach
to equilibrium . . . . . . . . . . . . . 527--534
Janet Walker and
Anne Van Nypelseer and
W. E. Langlois Numerical integration of a stochastic
model for the Volterra--Lotka reaction 535--546
Carlos A. Leguizamón Other developments regarding the concept
of energy in biological systems . . . . 547--563
Robert Rosen Lecture notes in biomathematics 4.
Physics and mathematics of the nervous
system . . . . . . . . . . . . . . . . . 565--568
Robert Rosen The chief abstractions of biology . . . 569--571
Nadav Liron On peristaltic flow and its efficiency 573--596
John P. Mullooly Stochastic equilibria for multivariate
reaction systems . . . . . . . . . . . . 597--622
Richard G. Fizell and
Paul E. Rubin Bounds on the populations in the
Dreitlein--Smoes model of oscillatory
kinetic systems . . . . . . . . . . . . 623--631
Webster R. Johnson and
Abdo H. Abdelmessih Two-regime model of the perfusion
measuring heated thermocouple probe . . 633--642
P. L. Chow and
W. C. Tam Periodic and traveling wave solutions to
Volterra--Lotka equations with diffusion 643--658
Jan Doroszewski and
Jadwiga Jakubas and
Wies\law Szlenk Mathematical model of dynamic adhesion
of lymphocytes on a glass-bead column 659--669
Leon Axel Flow limits of Kedem--Katchalsky
equations for fluid flux . . . . . . . . 671--677
J. Radziuk An integral equation approach to
measuring turnover in nonsteady
compartmental and distributed systems 679--693
Asha Seth Kapadia and
Bayliss C. McInnis A stochastic compartmental model with
continuous infusion . . . . . . . . . . 695--700
Hilmi Demiray Large deformation analysis of some basic
problems in biophysics . . . . . . . . . 701--712
A. Marmur and
W. N. Gill and
E. Ruckenstein Kinetics of cell deposition under the
action of an external field . . . . . . 713--721
D. Kannan On some Markov models of certain
interacting populations . . . . . . . . 723--738
Paul E. Rubin Bounds for generalized Dreitlein--Smoes
models . . . . . . . . . . . . . . . . . 739--743
Yoji Aizawa and
Yonosuke Kobatake A theory of oscillatory instability in
two-state systems in relation to nerve
excitation . . . . . . . . . . . . . . . i--i
M. Cardenas and
J. H. Matis On the time-dependent reversible
stochastic compartmental model --- I.
The general two-compartment system . . . ii--ii
Donald C. Chang A physical model of nerve axon --- I.
Ionic distribution, potential profile,
and resting potential . . . . . . . . . 1--22
Thomas D. Rogers Local models of cell aggregation
kinetics . . . . . . . . . . . . . . . . 23--42
Paul Rissman The leading edge approximation to the
nerve axon problem . . . . . . . . . . . 43--58
Milton Lieberman A stochastic model based upon computer
simulation using pre-emption to predict
size distribution and species
equitability . . . . . . . . . . . . . . 59--72
M. R. Davidson The influence of gas exchange on lung
gas concentrations during air breathing 73--86
R. S. Howard and
H. Bradner The $ \dot V_A / \dot Q $ resolution of
inert gas dataresolution of inert gas
data . . . . . . . . . . . . . . . . . . 87--98
Thomas D. Rogers Ecological capacity and species packing 99--107
Hedley C. Morris Almost critical ecosystems . . . . . . . 109--116
Lance A. Liotta and
Gerald M. Saidel and
Jerome Kleinerman Diffusion model of tumor vascularization
and growth . . . . . . . . . . . . . . . 117--128
G. Papini An exactly soluble non-linear dynamical
system . . . . . . . . . . . . . . . . . 129--131
F. R. McMorris On the compatibility of binary
qualitative taxonomic characters . . . . 133--138
Michael Conrad Functional significance of biological
variability . . . . . . . . . . . . . . 139--156
Philip H. Crowley Spatially distributed stochasticity and
the constancy of ecosystems . . . . . . 157--166
Per-Erik E. Bergner Application of a theorem by bright to
the generalized tracer system . . . . . 167--178
Aldo Rescigno The struggle for life --- IV two
predators sharing a prey . . . . . . . . 179--185
Jane Cronin Mathematical aspects of peridic
catatonic schizophrenia . . . . . . . . 187--199
Charles DeLisi and
Aldo Rescigno Immune surveillance and neoplasia --- 1
a minimal mathematical model . . . . . . 201--221
G. M. Barnwell and
F. S. Stafford A mathematical model of decision-making
neural circuits controlling behavioral
model selection . . . . . . . . . . . . 223--237
Robert Rosen On an empirical method for identifying
the observables involved in dynamical
interactions . . . . . . . . . . . . . . 239--244
H. Westcott Vayo and
Dhanjoo N. Ghista and
K. B. Chandran Oscillatory flow in thin-walled curved
elastic tubes --- Summary . . . . . . . 245--248
I. C. Bâianu, Ph.D., M.Inst.P. A logical model of genetic activities in
\Lukasiewicz algebras: The non-linear
theory . . . . . . . . . . . . . . . . . 249--258
Sid Deutsch Two-stage lateral inhibition for
auditory selectivity . . . . . . . . . . 259--266
George Karreman Cooperative specific adsorption
phenomena in biology . . . . . . . . . . 267--273
Otto E. Rössler Chaos in abstract kinetics: Two
prototypes . . . . . . . . . . . . . . . 275--289
H. D. Landahl Some conditions for sustained
oscillations in chain processes with
feedback inhibition and saturable
removal . . . . . . . . . . . . . . . . 291--296
Manfred Kempfle Relaxation spectra of two-step
mechanisms as measured by the
NADH-binding to glutamate dehydrogenase 297--310
B. L. Jones Analysis of Eigen's equations for
selection of biological molecules with
fluctuating mutation rates . . . . . . . 311--316
George W. Swan and
Thomas L. Vincent Optimal control analysis in the
chemotherapy of IgG multiple myeloma . . 317--337
M. Gatto and
S. Rinaldi Stability analysis of predator--prey
models via the Liapunov method . . . . . 339--347
J. Portnow and
A. Talo and
B. J. Hodgson A random walk model of ovum transport 349--357
D. A. Linkens The stability of entrainment conditions
for RLC coupled van der Pol oscillators
used as a model for intestinal
electrical rhythms . . . . . . . . . . . 359--372
Gerald Rosen Effects of diffusion on the stability of
the equilibrium in multi-species
ecological systems . . . . . . . . . . . 373--383
V. K. Sud and
G. S. Sekhon and
R. K. Mishra Pumping action on blood by a magnetic
field . . . . . . . . . . . . . . . . . 385--390
R. F. Stetson and
J. B. McGuire and
W. A. Hogan Simulation of nonlinear
reaction--diffusion equations . . . . . 391--396
Carlos A. Leguizamón Transfers between biological and
environmental systems . . . . . . . . . 397--406
Carlos A. Leguizamón The bio-environmental system and the
realizability of pre-biological systems 407--413
G. W. Cole and
N. R. Scott A mathematical model of the dynamic heat
transfer from the respiratory tract of a
chicken . . . . . . . . . . . . . . . . 415--433
G. W. Swan Exact fundamental solutions of linear
parabolic equations with spatially
varying coefficients . . . . . . . . . . 435--451
Kenneth H. Norwich On the information received by sensory
receptors . . . . . . . . . . . . . . . 453--461
S. R. Bernard An urn model study of variability within
a compartment . . . . . . . . . . . . . 463--470
C. P. Yu and
K. Chandra Precipitation of submicron charged
particles in human lung airways . . . . 471--478
Aldo Rescigno The struggle for life --- V. One species
living in a limited environment . . . . 479--485
Aldo Rescigno and
Charles DeLisi Immune surveillance and neoplasia ---
II. A two-stage mathematical model . . . 487--497
H. Nishimura Realization of dependency structures . . 499--503
J. F. G. Auchmuty and
G. Nicolis Bifurcation analysis of nonlinear
reaction--diffusion equations --- I . . 505--506
Anonymous Errata . . . . . . . . . . . . . . . . . 507--507
H. B. M. Uylings Optimization of diameters and
bifurcation angles in lung and vascular
tree structures . . . . . . . . . . . . 509--520
Gerald Rosen Physio-chemical mathematical theory for
transitions in cellular metabolism: an
aspect of carcinogenesis . . . . . . . . 521--532
D. L. Weiner and
P. Purdue The stochastic theory of compartments
--- A mammillary system . . . . . . . . 533--542
James P. Butler The Green's function for the
convection-diffusion equation in an
analytic lung model . . . . . . . . . . 543--563
Virendra Singh Analytical theory of the control
equations for protein synthesis in the
Goodwin model . . . . . . . . . . . . . 565--575
H. Radu and
A. Da Ronch and
V. Caldesi-Valeri Calcium and myotonia: a mathematical
model . . . . . . . . . . . . . . . . . 577--585
George Karreman and
Christian J. Lambertsen Kinetics of isobaric counterdiffusion 587--595
Martin Eisen and
John Schiller Stability analysis of normal and
neoplastic growth . . . . . . . . . . . 597--605
David K. Cohoon and
James B. Stewart Prediction of light-induced transient
thermal response of the retina . . . . . 607--612
R. Shonkwiler Consequences of the growth and division
model for mitochondria assuming no
cellular control . . . . . . . . . . . . 613--618
V. S. Varma Exact solutions for a special
prey--predator or competing species
system . . . . . . . . . . . . . . . . . 619--622
Ranabir Dutt and
Prabir Kumar Ghosh A graphical analysis of biological
evolution in a prey--predator ecology 623--627
Robert Rosen Structural stability and morphogenesis 629--632
Anonymous International Conference on Energy Use
Management . . . . . . . . . . . . . . . 633--633
Anonymous Henry Laurence Lucas, Jr. 1916--1977 . . 635--636
George Karreman Perspectives of mathematical biology
presidential address 1976 annual program
of the society for mathematical biology 637--641
N. Lakshminarayanaiah Evaluation of membrane surface charge
density: a discussion of some models . . 643--662
Robert Rosen Observation and biological systems . . . 663--678
Edward Kresch Cross-sectional shape of flexible tubes 679--691
Charles J. Mode Some techniques in building and
validating stochastic models of human
reproduction . . . . . . . . . . . . . . 693--704
Charles DeLisi Detection and analysis of recognition
and selection in the immune response . . 705--719
Gilbert N. Ling and
Kim Peterson A theory of cell swelling in high
concentrations of KCl and other chloride
salts . . . . . . . . . . . . . . . . . 721--741
N. Liron On peristaltic flow and its efficiency 743--743
A. E. R. Woodcock On the geometry of space-and
time-equivalent catastrophes . . . . . . 1--25
Leon Glass and
Joel S. Pasternack Prediction of limit cycles in
mathematical models of biological
oscillations . . . . . . . . . . . . . . 27--44
Otto E. Rössler Deductive biology --- Some cautious
steps . . . . . . . . . . . . . . . . . 45--58
Ruby Celeste and
Eugene Ackerman and
Laël C. Gatewood and
Clayton Reynolds and
George D. Molnar The role of glucagon in the regulation
of blood glucose: Model studies . . . . 59--77
Erich Doubek, Jr. Least energy regulation of the arterial
system . . . . . . . . . . . . . . . . . 79--93
C. N. Weygandt and
R. H. Cox and
G. Karreman and
M. L. Cole Pressure-flow relationships in a model
for the arterial system . . . . . . . . 95--105
C. V. Pao The kinetics of diffused substances in
some biological systems . . . . . . . . 107--121
George G. Ross A note on dynamics of population with
history-dependent birth rate . . . . . . 123--131
H. Robert van der Vaart Conditions for periodic solutions of
Volterra differential systems . . . . . 133--160
D. A. Danielson Tension field theories for soft tissues 161--182
H. G. Klinger Heat transfer in perfused biological
tissue --- II. The ``macroscopic''
temperature distribution in tissue . . . 183--199
R. E. Collin and
R. Plonsey A note on dipole sources in conducting
biological tissues . . . . . . . . . . . 201--209
John L. Stephenson Analysis of the transient behavior of
kidney models . . . . . . . . . . . . . 211--221
Allan B. Friedland A hydrodynamic model of aqueous flow in
the posterior chamber of the eye . . . . 223--235
Ajit K. Thakur and
Aldo Rescigno On the stochastic theory of
compartments: III. General
time-dependent reversible systems . . . 237--246
Chun Chiang On the nerve impulse equation: The
dynamic responses of nerve impulse . . . 247--255
M. I. Granero Porati and
A. Porati and
A. Vecli Analytical conditions for the
conservative form of the ecological
equations . . . . . . . . . . . . . . . 257--264
S. R. Bernard Metabolic model and dosimetric data for
copper . . . . . . . . . . . . . . . . . 265--269
Charles Walter Mathematical models of metabolic
regulation, \booktitleSymposia Biologica
Hungarica . . . . . . . . . . . . . . . 271--272
Jackie B. Garner and
Kenny S. Crump and
John L. Stephenson Transient behaviour of the single loop
solute cycling model of the renal
medulla . . . . . . . . . . . . . . . . 273--300
I. W. Richardson and
S. Miekisz A dynamical field theory for dissipative
systems: The hierarchical structure of
field thermodynamics . . . . . . . . . . 301--318
G. R. Walsh Optimal control of pests in the presence
of predators . . . . . . . . . . . . . . 319--333
G. Bojadziev The Krylov--Bogoliubov--Mitropolskii
method applied to models of population
dynamics . . . . . . . . . . . . . . . . 335--345
Mark J. Christensen and
R. Shonkwiler Lag time in microbe growth as an
age-dependent branching process with two
phase types . . . . . . . . . . . . . . 347--358
K. Vit Analytical solution to isometric
mechanogram of Hill's model of striated
muscle . . . . . . . . . . . . . . . . . 359--368
P. Bertrand and
G. Le Cardinal and
E. Walter Reconstitution of the transition matrix
from experimental data . . . . . . . . . 369--376
David A. Sánchez Linear age-dependent population growth
with harvesting . . . . . . . . . . . . 377--385
Edward H. Kerner Multiple speciation, competitive
exclusion, evolutionary pattern, and the
grand ensemble in Volterra eco-dynamics 387--410
Gordon M. Schoepfle and
Warren S. Rehm and
John H. Young Ionic concentration profiles and charge
distribution for the domain of a
polarized spherical cell . . . . . . . . 411--424
Robert Rosen A comment on the Richardson--Miekisz
field theory of thermodynamics . . . . . 425--426
D. L. Weiner and
P. Purdue The stochastic theory of compartments
--- a mammillary system . . . . . . . . 427--427
Michael A. B. Deakin An elementary approach to catastrophe
theory . . . . . . . . . . . . . . . . . 429--450
I. Mirsky and
P. L. McGill and
R. F. Janz Mechanical behaviour of ventricular
aneurysms . . . . . . . . . . . . . . . 451--464
Israel Mirsky Effects of external pressures on the
pressure-volume relation of the left
ventricle . . . . . . . . . . . . . . . 465--482
Stephen C. Smeach and
Albert Rust A stochastic approach to predator--prey
models . . . . . . . . . . . . . . . . . 483--498
Shui-Nan Chuang and
T. T. Soong Mathematical analysis of cancer
chemotherapy: The effects of
chemotherapeutic agents on the cell
cycle traverse . . . . . . . . . . . . . 499--512
Ken Tregonning and
Alan Roberts Ecosystem-like behavior of a
random-interaction model. I . . . . . . 513--524
B. S. Goh Global stability in a class of
prey--predator models . . . . . . . . . 525--533
I. S. Zhitomirskii and
A. A. Kagna A theoretical study of the temperature
distribution in skeletal muscle
undergoing rhythmic contractions . . . . 535--540
Nils Chr Stenseth and
Jon Reed A comment on Bobisud's paper on
evolution of cannibalism . . . . . . . . 541--545
David K. Cohoon and
James B. Stewart Prediction of light-induced transient
thermal response of the retina . . . . . 547--547
Robert Rosen Dynamical similarity and the theory of
biological transformations . . . . . . . 549--579
W. R. Scott and
D. B. Taulbee and
C. P. Yu Theoretical study of nasal deposition 581--604
Bruce Bridgeman Distributed sensory coding applied to
simulations of iconic storage and
metacontrast . . . . . . . . . . . . . . 605--623
Theo Pavlidis What do mathematical models tell us
about circadian clocks? . . . . . . . . 625--635
Douglas K. McIlroy and
Brian D. Hahn Electric field distribution, ionic
selectivity and permeability in nerve 637--649
C. Cobelli and
L. M. Morato On the identification by filtering
techniques of a biological
$n$-compartment model in which the
transport rate parameters are assumed to
be stochastic processes . . . . . . . . 651--660
H. Shen and
K. E. Lonngren and
E. L. Forker Self-similar solution of a distributed
model for transcapillary exchange and
solute removal by the liver . . . . . . 661--669
Gerald Rosen Steady-state distribution of bacteria
chemotactic toward oxygen . . . . . . . 671--674
Theo Pavlidis Qualitative similarities between the
behavior of coupled oscillators and
circadian rhythms . . . . . . . . . . . 675--692
C. P. Yu A two-component theory of aerosol
deposition in lung airways . . . . . . . 693--706
John T. Kemper The effects of asymptomatic attacks on
the spread of infectious disease: a
deterministic model . . . . . . . . . . 707--718
Debajyoti Bhaumik and
Kamales Bhaumik and
Asim Kumar Ray and
Binayak Dutta-Roy On a model and the kinetics of
photo-enhanced enzyme reactions . . . . 719--726
I. G. Darvey and
A. H. Klotz and
M. Ritter On the kinetics of enzyme reactions . . 727--734
N. Anderson and
A. M. Arthurs Complementary variational principles for
the steady-state finite cable model of
nerve membranes . . . . . . . . . . . . 735--742
P. Schuster and
K. Sigmund and
R. Wolff Dynamical systems under constant
organization. I. Topological analysis of
a family of non-linear differential
equations --- A model for catalytic
hypercycles . . . . . . . . . . . . . . 743--769
T. Erneux and
J. Hiernaux and
G. Nicolis Turing's theory in morphogenesis . . . . 771--789
D. C. Mikulecky Global flow equations for membrane
transport from local equations of
motion: I. The general case for $ (n -
1) $ nonelectrolyte solutes plus water 791--805
Aldo Rescigno On phase locking of pulse encoders . . . 807--821
Allan B. Friedland A mathematical model of transmural
transport of oxygen to the retina . . . 823--837
Francesco Andrietti Interactions among biological systems:
an analysis of asymptotic stability . . 839--851
Gerald Rosen Galerkin-Ritz procedures for approximate
solutions to systems of
reaction--diffusion equations . . . . . 853--863
Terry J. van der Werff and
Horst E. Wilhelm Steady state bifurcation analysis of
reaction--diffusion equations --- a
critique . . . . . . . . . . . . . . . . 865--872
Robert Rosen Mathematical models in biological
discovery. Lecture notes in
biomathematics . . . . . . . . . . . . . 873--875
Ya. S. Smetani\vc and
R. V. Polozov On the algorithms for determining the
primary structure of biopolymers . . . . 1--20
T. Erneux and
M. Herschkowitz-Kaufman Bifurcation diagram of a model chemical
reaction --- I. Stability changes of
time-periodic solutions . . . . . . . . 21--38
Edward Kresch Cross-sectional area of flexible tubes 39--52
Kenny S. Crump and
Wan-Shin C. O'Young Some stochastic features of bacterial
constant growth apparatus . . . . . . . 53--66
H. I. Freedman Stability analysis of a predator--prey
system with mutual interference and
density-dependent death rates . . . . . 67--78
Douglas E. Kenyon A mathematical model of water flux
through aortic tissue . . . . . . . . . 79--90
Georges A. Bécus Stochastic prey--predator relationships:
a random differential equation approach 91--100
A. E. R. Woodcock Catastrophe theory and cellular
determination, transdetermination and
differentiation . . . . . . . . . . . . 101--117
B. L. Jones Some selection models in catalytically
coupled selfreproducing macromolecular
systems . . . . . . . . . . . . . . . . 119--127
Thomas D. Rogers Diversity and diffusion in
multidimensional niche space . . . . . . 129--138
Hiroyuki Suga Minimal oxygen consumption and optimal
contractility of the heart: Theoretical
approach to principle of physiological
control of contractility . . . . . . . . 139--150
S. H. Lin Nonlinear diffusion in biological
systems . . . . . . . . . . . . . . . . 151--162
A. Peskoff Electric potential in three-dimensional
electrically syncytial tissues . . . . . 163--181
A. Peskoff Electric potential in cylindrical
syncytia and muscle fibers . . . . . . . 183--192
A. Babloyantz and
L. K. Kaczmarek Self-organization in biological systems
with multiple cellular contacts . . . . 193--201
S. El-Asfouri and
B. C. McInnis and
A. S. Kapadia Stochastic compartmental modeling and
parameter estimation with application to
cancer treatment follow-up studies . . . 203--215
B. G. Min Performance criteria for optimization of
cardiac assistance . . . . . . . . . . . 217--227
D. Kannan Volterra-Verhulst prey--predator systems
with time dependent coefficients:
Diffusion type approximation and
periodic solutions . . . . . . . . . . . 229--251
Robert Rosen Catastrophe theory: Selected papers
1972--1977 . . . . . . . . . . . . . . . 253--255
Jurgen Fohlmeister A theoretical study of neural adaptation
and transient responses due to
inhibitory feedback . . . . . . . . . . 257--282
Thomas D. Rogers and
S. C. Trofanenko On the measurement of shape . . . . . . 283--304
S. Zietz and
C. Nicolini Mathematical approaches to optimization
of cancer chemotherapy . . . . . . . . . 305--324
G. Bojadziev and
S. Chan Asymptotic solutions of differential
equations with time delay in population
dynamics . . . . . . . . . . . . . . . . 325--342
Douglas K. McIlroy Analysis of potassium conductance in
squid giant axons . . . . . . . . . . . 343--356
Geral Rosen Time development of probability
distributions for interacting species 357--364
V. S. Vaidhyanathan Nernst--Planck analog equations and
stationary state membrane electric
potentials . . . . . . . . . . . . . . . 365--385
Michael Conrad Mutation-absorption model of the enzyme 387--405
Herbert Hatze A teleological explanation of Weber's
law and the motor unit size law . . . . 407--425
Robert Rosen Some comments on activation and
inhibition . . . . . . . . . . . . . . . 427--445
D. C. Mikulecky Erratum: Global flow equations for
membrane transport from local equations
of motion: 1. The general case for $ (n
- 1) $ nonelectrolyte solutes plus water 447--447
B. L. Jones Stability and selection in
self-reproducing macromolecular systems 449--460
J. Hiernaux and
T. Erneux Chemical patterns in circular
morphogenetic fields . . . . . . . . . . 461--468
R. Lefever and
W. Horsthemke Bistability in fluctuating environments.
Implications in tumor immunology . . . . 469--490
James H. Matis and
H. Dennis Tolley Compartmental models with multiple
sources of stochastic variability: The
one-compartment, time invariant hazard
rate case . . . . . . . . . . . . . . . 491--515
J. E. Mann Some results on light penetration of an
absorbing medium . . . . . . . . . . . . 517--523
G. Stephanopoulos and
A. G. Fredrickson Coexistence of photosynthetic
microorganisms with growth rates
depending on the spectral quality of
light . . . . . . . . . . . . . . . . . 525--542
Georges A. Bécus Stochastic prey--predator relationships:
a random evolution approach . . . . . . 543--554
René P. Sperb On a mathematical model describing the
aggregation of amoebae . . . . . . . . . 555--571
D. A. Linkens The method of harmonic balance applied
to coupled asymmetrical van der Pol
oscillators for intestinal modelling . . 573--589
Ronald C. Tai and
Hsin-Kang Chang A mathematical study of non-equimolar
ternary gas diffusion . . . . . . . . . 591--606
P. R. Parthasarathy and
A. Krishnamoorthy Markov branching processes with varying
growth rates . . . . . . . . . . . . . . 607--610
B. C. McInnis and
S. A. El-Asfouri and
S. A. Kapadia On stochastic compartmental modeling . . 611--613
Michael A. B. Deakin Catastrophe theory and its applications
(Surveys and reference works in
mathematics 2) . . . . . . . . . . . . . 615--616
Daniel S. Levine Existence of a limiting pattern for a
system of nonlinear equations describing
interpopulation competition . . . . . . 617--628
D. C. Mikulecky Global flow equations for membrane
transport from local equations of motion
--- II. The case of a single
nonelectrolyte solute plus water . . . . 629--640
E. Beretta and
F. Vetrano and
F. Solimano and
C. Lazzari Some results about nonlinear chemical
systems represented by trees and cycles 641--664
José Argémi and
Maurice Gola and
Hél\`ene Chagneux Qualitative analysis of a model
generating long potential waves in
Ba-treated nerve cells --- I. Reduced
systems . . . . . . . . . . . . . . . . 665--686
R. A. Sherlock Analysis of the behaviour of Kauffman
binary networks --- I. State space
description and the distribution of
limit cycle lengths . . . . . . . . . . 687--705
R. A. Sherlock Analysis of the behaviour of Kauffman
binary networks --- II. The state cycle
fraction for networks of different
connectivities . . . . . . . . . . . . . 707--724
Truett L. Smith and
Chris P. Tsokos On the study of two interacting
populations one of which acts
independently of the other . . . . . . . 725--735
J. O. Epperson and
J. H. Matis On the distribution of the general
irreversible $n$-compartmental model
having time-dependent transition
probabilities . . . . . . . . . . . . . 737--749
M. J. Manton On feasible random ecosystems . . . . . 751--755
Donald C. Mikulecky and
Robert Rosen Book reviews . . . . . . . . . . . . . . 757--759
H. Hatze A teleological explanation of Weber's
law and the motor unit size law . . . . i--i
B. L. Jones Selection in systems of self-reproducing
macromolecules under the constraint of
controlled energy fluxes . . . . . . . . 761--766
T. Erneux and
M. Herschkowitz-Kaufman The bifurcation diagram of a model
chemical reaction --- II. Two
dimensional time-periodic patterns . . . 767--790
B. Heukelom and
A. van der Stelt and
P. C. Diegenbach A simple anatomical model of muscle, and
the effects of internal pressure . . . . 791--802
Bernd Küppers Some remarks on the dynamics of
molecular self-organization . . . . . . 803--812
Yoji Aizawa and
Hiroshi Shimizu An exact analysis of the sliding motion
in contractile system: a simplified
model of muscle system . . . . . . . . . 813--828
Michael C. Mackey Periodic auto-immune hemolytic anemia:
an induced dynamical disease . . . . . . 829--834
Mark J. Ablowitz and
Anthony Zeppetella Explicit solutions of Fisher's equation
for a special wave speed . . . . . . . . 835--840
Chun Chiang On the gating currents and the dipole
transitions . . . . . . . . . . . . . . 841--848
B. L. Jones Some models for selection of biological
macromolecules with time varying
constraints . . . . . . . . . . . . . . 849--859
M. E. Fisher and
B. S. Goh and
T. L. Vincent Some stability conditions for
discrete-time single species models . . 861--875
Thomas C. Gard and
Thomas G. Hallam Persistence in food webs --- I.
Lotka--Volterra food chains . . . . . . 877--891
H. C. Yeh Modeling of biological tree structures 893--898
R. Martino Analytical considerations on a new class
of functions for the mathematical
description of the human Erythrocyte's
profile during the osmotic,
``disk-sphere'' transition . . . . . . . 899--904
Michael Schum and
Hsu-Chi Yeh Theoretical evaluation of aerosol
deposition in anatomical models of
mammalian lung airways . . . . . . . . . 1--15
Hiram E. Hart and
Ki-Chuen Chak Theory of antigen-antibody induced
particulate aggreagation --- I. General
assumptions and basic theory . . . . . . 17--36
Ki-Chuen Chak and
Hiram Hart Theory of antigen-antibody induced
particulate aggregation --- II
theoretical analysis and comparison with
experimental results . . . . . . . . . . 37--56
William R. Smith Hypothalamic regulation of pituitary
secretion of luteinizing hormone --- II
feedback control of gonadotropin
secretion . . . . . . . . . . . . . . . 57--78
Ling Y. Wei Dipole theory of interactions of nerve
signals . . . . . . . . . . . . . . . . 79--94
Gerald Rosen On the Fisher and the cubic-polynomial
equations for the propagation of species
properties . . . . . . . . . . . . . . . 95--106
S. Comorosan and
M. Hristea and
P. Murgoci On a new symmetry in biological systems 107--117
Hironori Hirata A model of hierarchical ecosystems with
migration . . . . . . . . . . . . . . . 119--130
N. Anderson and
A. M. Arthurs Complementary variational principles for
diffusion problems with
Michaelis--Menten kinetics . . . . . . . 131--135
Ion C. Baianu Structural order and partial disorder in
biological systems . . . . . . . . . . . 137--141
Anonymous Announcements . . . . . . . . . . . . . 143--145
Ajit K. Thakur and
Charles DeLisi Fluctuation analysis in small chemically
reacting systems . . . . . . . . . . . . 147--160
Carlos A. Leguizamón and
Juan C. Giménez Concept of energy in biological systems
and the effects of irradiations of low
energies on enzyme-substrate systems . . 161--172
B. G. Min and
W. Welkowitz and
S. Fich Frequency analysis of time-varying
elastance model of the left ventricle 173--180
Edward L. Keller Primitivity of the product of two Leslie
matrices . . . . . . . . . . . . . . . . 181--189
Joe Bentz and
Shlomo Nir Cation binding to membranes: Competition
between mono-, di- and trivalent cations 191--220
José Argémi and
Maurice Gola and
Hél\`ene Chagneux Qualitative analysis of a model
generating long potential waves in
Ba-treated nerve cells. II. Complete
system . . . . . . . . . . . . . . . . . 221--238
Evelyn Stevens and
Roberta F. Colman Chemical modification of enzymes:
Critical evaluation of the graphical
correlation between residual enzyme
activity and number of groups modified 239--255
C. D. Thron The nonexistence of ``hermaphoroditic''
tracer systems . . . . . . . . . . . . . 257--265
Matthew Witten A note on the structure of system state
spaces and its implications on the
existence of non-repeatable experiments 267--272
B. F. Gray Heat generation in tissues . . . . . . . 273--274
I. Zhitomirskii and
A. Kagna Temperature distribution in muscle . . . 275--275
Robert Rosen Book reviews . . . . . . . . . . . . . . 277--281
E. Beretta Some results about nonlinear chemical
systems represented by trees and cycles 282--282
J. B. Shukla and
R. S. Parihar and
B. R. P. Rao Effects of stenosis on non--Newtonian
flow of the blood in an artery . . . . . 283--294
J. B. Garner and
R. B. Kellogg A one tube flow problem arising in
physiology . . . . . . . . . . . . . . . 295--304
M. C. Shen and
S. M. Shim and
A. M. Wu Asymptotic method for peristaltic
transport . . . . . . . . . . . . . . . 305--325
Charles J. Lumsden and
L. E. H. Trainor On the Hamiltonian content of
biodynamics . . . . . . . . . . . . . . 327--337
Shun-Ichi Amari Topographic organization of nerve fields 339--364
Stephen Grossberg Intracellular mechanisms of adaptation
and self-regulation in self-organizing
networks: The role of chemical
transducers . . . . . . . . . . . . . . 365--396
C. R. Kennedy and
R. Aris Traveling waves in a simple population
model involving growth and death . . . . 397--429
Ion C. Baianu Natural transformations of organismic
structures . . . . . . . . . . . . . . . 431--446
B. R. Scott A model for early death caused by
radiation pneumonitis and pulmonary
fibrosis after inhaling insoluble
radioactive particles . . . . . . . . . 447--459
Hsu-Chi Yeh and
G. M. Schum Models of human lung airways and their
application to inhaled particle
deposition . . . . . . . . . . . . . . . 461--480
J. Z. Hearon On the completely symmetric
compartmental system . . . . . . . . . . 481--488
Chyuan-Yih Lee The dipole flip-flop theory for the
excitation and conduction of excitable
tissues --- I. Dipole's behavior and
gating currents . . . . . . . . . . . . 489--505
Matthew Witten Some generalized conjugacy theorems and
the concepts of fitness and survival in
logistic growth models . . . . . . . . . 507--528
C. S. Patlak and
K. D. Pettigrew and
S. I. Rapoport Use of transient and steady-state
measurements of the unidirectional flux
ratio for the determination of the free
energy change of chemical reactions and
active transport systems . . . . . . . . 529--537
B. L. Jones On the evolution of prebiotic enzyme
coupled macromolecular systems . . . . . 539--549
J. R. Pounder and
Thomas D. Rogers The geometry of chaos: Dynamics of a
nonlinear second-order difference
equation . . . . . . . . . . . . . . . . 551--597
A. J. Willson On Varma's prey--predator problem . . . 599--600
Gregory S. B. Lin Theory of cation-phospholipid-induced
shape changes in a lipid bilayer couple 601--625
M. A. Khanin and
I. B. Bukharov A mathematical model of the functional
state of the oxygen transport system . . 627--645
M. A. B. Deakin Applied catastrophe theory in the social
and biological sciences . . . . . . . . 647--679
Jacob S. Ishay and
Bice Perna and
Yosef Hochberg and
Mina Goldstein Photoelectric properties of the ``yellow
strips'' in \bionameVespa orientalis; a
mathematical model . . . . . . . . . . . 681--689
Richard J. Bucolo and
Vijai K. Tripathi Steady-state analysis of a
two-compartment barrier-limited
capillary-tissue model with
Michaelis--Menten saturation kinetics 691--700
G. N. Bojadziev Damped oscillating processes in
biological and biochemical systems . . . 701--718
Paul Cull The problem of time unit in Leslie's
population model . . . . . . . . . . . . 719--728
K. Gopalsamy Time lags and global stability in
two-species competition . . . . . . . . 729--737
Max D. Morris and
C. Alex McMahan A note on the dominance hierarchy index 739--746
Robert Rosen Food webs and niche spaces . . . . . . . 747--748
J. Bentz and
S. Nir Cation binding to membranes; competition
between mono-, di-and trivalent cations 749--749
Douglas K. McIlroy On the theory of interfacial
double-layer potential differences and
periaxonal accumulation of potassium in
squid giant axons . . . . . . . . . . . 751--763
R. J. Roselli Effects of red cell permeability on
transcapillary tracer transport: The
case of negligible back diffusion . . . 765--795
J. B. Shukla and
R. S. Parihar and
S. P. Gupta Effects of peripheral layer viscosity on
blood flow through the artery with mild
stenosis . . . . . . . . . . . . . . . . 797--805
I. Mirsky and
M. M. Laks A geometric model for the myocardium:
Biventricular wall stresses in normal
and hypertrophied states . . . . . . . . 807--828
S. C. Bhargava On the Higgins model of glycolysis . . . 829--836
Jesper Larsen A mathematical model of the oscillations
in the aphakic eye . . . . . . . . . . . 837--845
Wen-Jia Russell Chen and
David Shii-Pyng Shiah and
C. S. Wang A three-dimensional model of the upper
tracheobronchial tree . . . . . . . . . 847--859
W. Liniger and
G. Karreman and
R. Rawala and
R. Colman Mathematical model of the activation of
prothrombin by factor $ X_a $ and factor
$ V_t $ . . . . . . . . . . . . . . . . 861--870
K. Gopalsamy Pursuit-evasion wave trains in
prey--predator systems with
diffusionally coupled delays . . . . . . 871--887
Robert Rosen On control and optimal control in
biodynamic systems . . . . . . . . . . . 889--897
Robert Rosen Mathematical models in the health
sciences: a computer-aided approach . . 899--900
Anonymous The 9th Annual Northeast Biomedical
Engineering Conference . . . . . . . . . 901--901
Gerald M. Saidel and
Gerald M. Burma Multibreath tracer species dynamics in
the lung . . . . . . . . . . . . . . . . 1--19
Virendra Singh Nonlinear biological oscillators:
Action-angle variable approach with an
application to Cowan's model of
neuroelectric activity . . . . . . . . . 21--32
S. R. Bernard and
Milton Sobel and
V. R. R. Uppuluri On a two urn model of Pólya-type . . . . 33--45
Paul Cull Global stability of population models 47--58
Michael Conrad and
Arnon Rosenthal Limits on the computing power of
biological systems . . . . . . . . . . . 59--67
J. Roerdink and
A. Weyland A generalized Fokker--Planck equation in
the case of the Volterra model . . . . . 69--79
A. L. Kovacs and
C. Pacitti and
F. Conti and
A. L. Segre A topological study of the base
sequences of MS2 and $ \varphi $ X174
genoma . . . . . . . . . . . . . . . . . 81--88
Shoshana L. Hardt The diffusion transit time; A simple
derivation . . . . . . . . . . . . . . . 89--99
Keith Horsfield and
Alison Thurlbeck Volume of the conducting airways
calculated from morphometric parameters 101--109
Peter Purdue Variability in a single compartment
system: a note on S. R. Bernard's model 111--116
D. L. S. McElwain A comment on Lin's paper on nonlinear
diffusion in biological systems . . . . 117--120
Robert Rosen Nonlinear oscillations in biology . . . 121--123
K. Gopalsamy and
B. D. Aggarwala The logistic equation with a
diffusionally coupled delay . . . . . . 125--140
Kenneth H. Norwich Uncertainty in physiology and physics 141--149
G. Radhakrishnamacharya and
Peeyush Chandra and
M. R. Kaimal A hydrodynamical study of the flow in
renal tubules . . . . . . . . . . . . . 151--163
Gregory Stephanopoulos and
A. G. Fredrickson Extinction probabilities in microbial
predation: a birth and death approach 165--181
Alan Y. K. Wong Some comments on the conductance of slow
inward current in cardiac muscle . . . . 183--199
G. K. Agrafiotis On the stochastic theory of
compartments: The leaving process of the
two-compartment systems . . . . . . . . 201--211
Dionyssis Venieratos Models on prebiotic polymer competition:
a deterministic approach . . . . . . . . 213--232
H. Moseley and
R. Strang Prediction of the effect of the
choroidal circulation on the retinal
temperature during illumination . . . . 233--238
T. Margush and
F. R. McMorris Consensus $n$-trees . . . . . . . . . . 239--244
Aldo Rescigno and
James H. Matis On the relevance of stochastic
compartmental models to pharmacokinetic
systems . . . . . . . . . . . . . . . . 245--247
John T. Kemper Identification of silent infections in
SIR epidemics . . . . . . . . . . . . . 249--257
M. Marek and
M. Kubí\^cek Morphogen pattern formation and
development in growth . . . . . . . . . 259--270
T. B. Boffey and
D. F. Yates Simulation experiments with a model for
cellular growth . . . . . . . . . . . . 271--278
Ian Stewart and
A. E. R. Woodcock On Zeeman's equations for the nerve
impulse . . . . . . . . . . . . . . . . 279--325
L. R. Shenton A reinforcement-depletion urn problem
--- I. Basic theory . . . . . . . . . . 327--340
N. Anderson and
A. M. Arthurs Complementary extremum principles for a
nonlinear model of heat conduction in
the human head . . . . . . . . . . . . . 341--346
P. R. Parthasarathy and
P. Mayilswami Stochastic compartmental model with
branching particles . . . . . . . . . . 347--360
Rainer Ignetik and
Michael A. B. Deakin and
Chris Fandry Phase-plane analyses of the
Michaelis--Menten reaction equations . . 361--370
C.-Y. Lee On Wei's fundamental equation for nerve
excitation . . . . . . . . . . . . . . . 371--372
L. Y. Wei Reply to Chyuan-Yih Lee . . . . . . . . 372--373
Rainer Ignetik and
Michael A. B. Deakin Asymptotic analysis of the
Michaelis--Menten reaction equations . . 375--388
J. C. Eilbeck and
S. D. Luzader and
A. C. Scott Pulse evolution on coupled nerve fibres 389--400
William T. Joines and
Blake S. Wilson Field-induced forces at dielectric
interfaces as a possible mechanism of RF
hearing effects . . . . . . . . . . . . 401--413
A. Muir The construction of homogeneous nets . . 415--426
James R. Brannan and
William E. Boyce Spatially localized interactive neural
populations --- I. A mathematical model 427--446
Rachad M. Shoucri Contractile analysis and kinetic energy
of the myocardium . . . . . . . . . . . 447--461
K. Gopalsamy Limit cycles in periodically perturbed
population systems . . . . . . . . . . . 463--485
B. R. Scott A dose-response model for estimating
lifetime tumor risks when cell killing
occurs . . . . . . . . . . . . . . . . . 487--501
Karmeshu and
C. K. Gupta A one-compartment model with stochastic
parameter . . . . . . . . . . . . . . . 503--512
Robert Rosen On a unified approach to pattern
generation . . . . . . . . . . . . . . . 513--516
Malcolm M. Davidson Further considerations in a theoretical
description of gas transport in lung
airways . . . . . . . . . . . . . . . . 517--548
K. M. Mehata and
D. Deivamoney Selvam A stochastic model for the
$n$-compartment irreversible system . . 549--561
N. P. Gopalan Pulsatile blood flow in a rigid
pulmonary alveolar sheet with porous
walls . . . . . . . . . . . . . . . . . 563--577
A. I. MacFarlane Dynamic structure theory: a structural
approach to social and biological
systems . . . . . . . . . . . . . . . . 579--591
J. B. Shukla and
Sunita Verma Effects of convective and dispersive
interactions on the stability of two
species . . . . . . . . . . . . . . . . 593--610
T. Tóth Role of the hypergeometric distribution
in the transmission of excitation
through sympathetic ganglia . . . . . . 611--618
H. A. Saroff and
F. A. Kutyna The uniqueness of protein sequences: a
Monte Carlo analysis . . . . . . . . . . 619--639
M. W. Warner Tolerance nets . . . . . . . . . . . . . 641--650
James H. Matis and
Thomas E. Wehrly Compartmental models with multiple
sources of stochastic variability: The
one-compartment models with clustering 651--664
B. L. Jones and
H. K. Leung Stochastic analysis of a nonlinear model
for selection of biological
macromolecules . . . . . . . . . . . . . 665--680
Keith Horsfield and
Alison Thurlbeck Relation between diameter and flow in
branches of the bronchial tree . . . . . 681--691
C. D. Thron Peak drug levels in linear
pharmacokinetic systems --- I. Effect of
rate of injection . . . . . . . . . . . 693--703
C. D. Thron Peak drug levels in linear
pharmacokinetic systems --- II.
Conditions for a paradoxical injection
rate effect with rectangular input . . . 705--715
Joel E. Cohen Some trees are not interval graphs . . . 717--717
Anonymous Annual Meeting of the Cell Kinetics
Society . . . . . . . . . . . . . . . . 719--719
Marek Kimmel An equivalence result for integral
equations with application to branching
processes . . . . . . . . . . . . . . . 1--15
H. Inagaki Selection under random mutations in
stochastic Eigen model . . . . . . . . . 17--28
Julius Melbin and
Abraham Noordergraaf General solution for flow and stress
phenomena in elastic vessels
(Navier--Stokes) . . . . . . . . . . . . 29--42
James R. Brannan Spatially localized interactive neural
populations --- II: Stability and
dynamics of excitatory sets . . . . . . 43--56
D. A. Linkens and
R. I. Kitney Mode analysis of physiological
oscillators intercoupled via pure time
delays . . . . . . . . . . . . . . . . . 57--74
P. R. Parthasarathy and
P. Mayilswami Stochastic compartmental models with
branching and immigrant particles . . . 75--86
K. J. Brown and
J. C. Eilbeck Bifurcation, stability diagrams, and
varying diffusion coefficients in
reaction--diffusion equations . . . . . 87--102
M. I. Granero-Porati and
R. Kron-Morelli and
A. Porati Random ecological systems with
structure: Stability-complexity
relationship . . . . . . . . . . . . . . 103--117
M. Weingarden and
H. Mizukami and
Stephan A. Rice Transient effects on the initial rate of
oxygenation of red blood cells . . . . . 119--134
M. Weingarden and
H. Mizukami and
S. A. Rice Factors defining the rate of oxygen
uptake by the red blood cell . . . . . . 135--147
Jane Cronin Remark on the article, ``Applied
catastrophe theory in the social and
biological sciences'' by M. A. B. Deakin
(1980) . . . . . . . . . . . . . . . . . 149--150
S. R. Bernard Book review . . . . . . . . . . . . . . 151--151
T. Tóth Role of the hypergeometric distribution
in the transmission of excitation
through sympathetic Ganglia . . . . . . 152--152
Mohsin R. Siddique and
T. Leo van Winkle and
David M. Wetzel and
Marshall M. Lih A variational calculus approach to the
suspension flow problem using the
minimal force hypothesis . . . . . . . . 153--174
Hilmi Demiray and
Mark Levinson On a class of finite deformations of
elastic soft tissues . . . . . . . . . . 175--192
Jean-Pierre Dujardin and
Boudewijn Van Gelder Large signal, low frequency
characteristics of the systemic arterial
system . . . . . . . . . . . . . . . . . 193--213
Y. J. Seto and
S. T. Hsieh Electromagnetic mediated
pharmacokinetics in a three-layer
diffusional system . . . . . . . . . . . 215--229
Maurice Gola and
Hél\`ene Chagneux and
José Argémi An asymmetrical kinetic model for
veratridine interactions with sodium
channels in molluscan neurons . . . . . 231--258
Ronald Shonkwiler and
Maynard Thompson Common source epidemics. I: a stochastic
model . . . . . . . . . . . . . . . . . 259--269
R. Nallaswamy and
J. B. Shukla Effects of convective and dispersive
migration on the linear stability of a
two species system with mutualistic
interactions and functional response . . 271--282
A. van Rotterdam and
F. H. Lopes da Silva and
J. van den Ende and
M. A. Viergever and
A. J. Hermans A model of the spatial-temporal
characteristics of the alpha rhythm . . 283--305
Anonymous Announcements . . . . . . . . . . . . . 307--307
Alan E. Gelfand A behavioral summary for completely
random nets . . . . . . . . . . . . . . 309--320
B. F. Gray and
M. E. Sherrington Eigensolutions of nonlinear wave
equations in one dimension . . . . . . . 321--337
B. H. Voorhees Dissipative structures associated to
certain reaction--diffusion equations in
mathematical ecology . . . . . . . . . . 339--348
André G. Roy and
Michael J. Woldenberg A generalization of the optimal models
of arterial branching . . . . . . . . . 349--360
R. Taylor and
R. Krishnamurthy Film models for multicomponent mass
transfer: Diffusion in physiological gas
mixtures . . . . . . . . . . . . . . . . 361--376
Ronald Shonkwiler and
Maynard Thompson Common source epidemics II:
Toxoplasmosis in Atlanta . . . . . . . . 377--398
Herbert D. Landahl and
Gerold M. Grodsky Comparison of models of insulin release 399--409
Wim van Drongelen and
Yves Pagnotte and
Mat H. Hendriks Primary events in odour detection . . . 411--423
T. B. Martonen Analytical model of hygroscopic particle
behavior in human airways . . . . . . . 425--442
Michael Conrad and
Otto Rössler Example of a system which is computation
universal but not effectively
programmable . . . . . . . . . . . . . . 443--447
Jane Cronin Remark on the letter by Zhitomirsky and
Kagna (1980) . . . . . . . . . . . . . . 449--449
I. S. Zhitomirsky and
A. A. Kagna Reply to letter by Jane Cronin (1982) 450--450
Anonymous Announcements . . . . . . . . . . . . . 451--452
Mathew Witten and
David Siegel A kinetics model of abrin binding in a
virus transformed lymphocyte cell
culture . . . . . . . . . . . . . . . . 453--476
Aldo Rescigno and
James S. Beck and
H. Joseph Goren Determination of dependence of binding
parameters on receptor occupancy . . . . 477--489
A. R. Bouffette and
J. Bouffette Mathematical model for the study of
fertility and viability in inbreeding
populations . . . . . . . . . . . . . . 491--500
G. E. Tanyi Energy and biological evolution --- I.
The equilibrium states of biochemical
processes . . . . . . . . . . . . . . . 501--535
G. E. Tanyi Energy and biological evolution --- II.
The mathematical structure of
equilibrium states . . . . . . . . . . . 537--547
G. E. Tanyi Energy and biological evolution --- III.
Theoretical ecology and macromolecular
self-organization . . . . . . . . . . . 549--555
K. M. Mehata and
D. Deivamoney Selvam A stochstic model for a two-compartment
reversible system . . . . . . . . . . . 557--570
V. P. Shukla and
P. C. Das Effects of dispersion on stability of
multispecies prey--predator systems . . 571--578
F. Solimano and
E. Beretta Graph theoretical criteria for stability
and boundedness of predator--prey
systems . . . . . . . . . . . . . . . . 579--585
Asha Seth Kapadia and
Bayliss C. McInnis Distribution of survival times in the
Fix and Neyman model . . . . . . . . . . 587--591
R. B. Campbell Repeatability of experiments . . . . . . 593--593
Matthew Witten A reply to ``Repeatability of
experiments'' by R. B. Campbell . . . . 594--595
M. Zamir Local geometry of arterial branching . . 597--607
C. D. Thron Peak drug levels in linear
pharmacokinetic systems --- III.
Multimodal impulse responses in
multicompartment systems . . . . . . . . 609--635
R. F. Stetson and
W. A. Hogan Simulation of chemical oscillations in
membranes . . . . . . . . . . . . . . . 637--645
Charles J. Mode and
Robert C. Busby An eight-parameter model of human
mortality --- The single decrement case 647--659
M. W. Warner Representations of $ (M, R) $-systems by
categories of automata . . . . . . . . . 661--668
E. A. Marshall Equilibrium electropotentials in
electrolyte systems . . . . . . . . . . 669--687
Matthew Witten Some thoughts on quantum non-demolition
measurements in biological systems . . . 689--696
Hironori Hirata Evolution of a predator--prey
Volterra--Lotka ecosystem with
saturation effect . . . . . . . . . . . 697--704
Debajyoti Bhaumik and
Binayak Dutta-Roy and
Avijit Lahiri Solitary waves and macromolecular
systems . . . . . . . . . . . . . . . . 705--713
F. Fogelman-Soulie and
E. Goles-Chacc and
G. Weisbuch Specific roles of the different boolean
mappings in random networks . . . . . . 715--730
Grayson C. Brown and
Gerald L. Nordin An epizootic model of an insect--fungal
pathogen system . . . . . . . . . . . . 731--739
Dieter Schenzle On feedback control of gonadotropin
secretion . . . . . . . . . . . . . . . 741--748
Gregory H. Paine The development of Lagrangians for
biological models . . . . . . . . . . . 749--760
I. W. Richardson and
E. A. D. Foster and
S. Miekisz Nonlinear generalizations of the
Kedem--Katchalsky equations for ionic
fluxes . . . . . . . . . . . . . . . . . 761--775
V. V. Krishnan and
E. I. Jury and
L. Stark Biological optimality: Comparison of
generalized feasibility and optimality
conditions for linear, error-minimizing
systems . . . . . . . . . . . . . . . . 777--791
G. W. Swan An optimal control model of
\bionameDiabetes mellitus . . . . . . . 793--808
G. K. Agrafiotis On the stochastic theory of
compartments: a semi-Markov approach for
the analysis of the $K$-compartmental
systems . . . . . . . . . . . . . . . . 809--817
Rachad M. Shoucri and
Jean G. Dumesnil and
Jacques Rouleau and
Gilles R. Dagenais Some applications of the concept of body
forces for the myocardium . . . . . . . 819--840
Nobuyoshi Tosaka and
Shuhei Miyake Analysis of a nonlinear diffusion
problem With Michaelis--Menten kinetics
by an integral equation method . . . . . 841--849
Eric P. Salathé and
Tseng-Chan Wang The development of anoxia following
occlusion . . . . . . . . . . . . . . . 851--877
F. Andrietti and
R. Pezzotta Diffusion along intercellular spaces: an
analysis of a transient situation . . . 879--891
R. R. Burnside A note on exact solutions of two
prey--predator equations . . . . . . . . 893--897
Anonymous Announcements . . . . . . . . . . . . . 899--900
L. R. Shenton A reinforcement depletion urn problem
--- II. Application and generalization 1--9
Claude Lefevre On a simple epidemic model with a
heterogeneous infective population . . . 11--20
P. Torkington Kinetics of deterrence of Gompertzian
growth . . . . . . . . . . . . . . . . . 21--31
F. James Rohlf Numbering binary trees with labeled
terminal vertices . . . . . . . . . . . 33--40
J. Perkkiö and
R. Keskinen Hematocrit reduction in bifurcations due
to plasma skimming . . . . . . . . . . . 41--50
F. G. Mosqueira A simple competition model involving
selection . . . . . . . . . . . . . . . 51--67
Jacek T. Duniec and
Sidney W. Thorne Electrostatic potentials in membrane
systems . . . . . . . . . . . . . . . . 69--90
Debajyoti Bhaumik and
Binaryak Dutta-Roy and
Tarun Kumar Chaki and
Avijit Lahiri Electric field dependence of phase
transitions in bilayer lipid membranes
and possible biological implications . . 91--101
P. L. Antonelli and
B. H. Voorhees Non-linear growth mechanics --- I.
Volterra--Hamilton systems . . . . . . . 103--116
H. A. Saroff and
H. T. Pretorius The uniqueness of protein sequences.
$o$-Uniqueness and infrequent peptides 117--138
Michael H. Brill Weber's law and perceptual categories:
Another teleological view . . . . . . . 139--142
Chikafusa Bessho and
Naoki Kuroda A note on a more general solution of
Eigen's rate equation for selection . . 143--149
Gerald Rosen Theoretical significance of the
condition $ \delta = 2 \mu $ in
bacterial chemotaxis . . . . . . . . . . 151--153
A. M. Arthurs and
W. M. Arthurs Pointwise bounds for the solution of a
nonlinear problem in cell membrane
theory . . . . . . . . . . . . . . . . . 155--168
R. J. Schilling A mathematical model of the effects of
light on the eclosion rhythm of the
fruit fly \bionameDrosophila
pseudoobscura . . . . . . . . . . . . . 169--192
M. W. Warner Lattices and lattice-valued relations in
biology . . . . . . . . . . . . . . . . 193--207
Linda J. S. Allen Persistence and extinction in
single-species reaction--diffusion
models . . . . . . . . . . . . . . . . . 209--227
J. E. Mann On stochastic models of light absorption 229--237
D. P. Atherton and
D. A. Linkens Analysis of limit-cycle conditions in
intercoupled relay oscillators with
reference to gastrointestinal modelling 239--257
J. Perkko and
R. Keskinen On the effect of the concentration
profile of red cells on blood flow in
the artery with stenosis . . . . . . . . 259--267
J. van Pelt and
R. W. H. Verwer The exact probabilities of branching
patterns under terminal and segmental
growth hypotheses . . . . . . . . . . . 269--285
David Lurié and
Jorge Wagensberg On biomass diversity in ecology . . . . 287--293
K. Gopalsamy Harmless delays in model systems . . . . 295--309
N. F. Britton and
G. Joly and
M.-C. Duban A model for hydranth regeneration in
Tubularia . . . . . . . . . . . . . . . 311--321
B. R. Scott Theoretical models for estimating
dose-effect relationships after combined
exposure to cytotoxicants . . . . . . . 323--345
D. Kannan A Markov chain analysis of predator
strategy in a model-mimic system . . . . 347--400
M. J. Faddy Compartmental models with restricted
movement . . . . . . . . . . . . . . . . 401--408
T. Martonen On the fate of inhaled particles in the
human: a comparison of experimental data
with theoretical computations based on a
symmetric and asymmetric lung . . . . . 409--424
Matthew Witten The diffusion process approach to
one-compartmental stochastic models: a
mathematical note . . . . . . . . . . . 425--430
V. Capasso and
S. L. Paveri-Fontana Comments on statistical independence for
linear stochastic multicompartmental
systems . . . . . . . . . . . . . . . . 431--435
M. A. B. Deakin Reply to letter by Jane Cronin (1982) 436--436
Anonymous Foreword . . . . . . . . . . . . . . . . 437--437
C. DeLisi and
M. Iannelli and
G. Koch Introduction . . . . . . . . . . . . . . 439--442
A. V. Holden Stochastic processes in neurophysiology:
Transformation from point to continuous
processes . . . . . . . . . . . . . . . 443--465
Charles DeLisi Stochastic problems in information
transfer across the plasma membrane . . 467--482
Wolfgang Kliemann Qualitative theory of stochastic
dynamical systems --- Applications to
life sciences . . . . . . . . . . . . . 483--506
Peter Jagers Stochastic models for cell kinetics . . 507--519
Takeo Maruyama Stochastic theory of population genetics 521--554
V. Capasso and
S. L. Paveri-Fontana Analysis of the correlations for
stochastic multicompartmental systems 555--569
Giovanni B. Di Masi and
Wolfgang J. Runggaldier Non-linear filtering with discontinuous
observations and applications to life
sciences . . . . . . . . . . . . . . . . 571--577
Manfred Ehrhardt Invariant probabilities for systems in a
random environment --- With applications
to the Brusselator . . . . . . . . . . . 579--590
E. Pardoux Semi-linear stochastic models:
Computation of moments and conditional
moments . . . . . . . . . . . . . . . . 591--597
G. Da Prato On some abstract stochastic differential
equations . . . . . . . . . . . . . . . 599--603
A. Bertuzzi and
A. Gandolfi Recent views on the cell cycle structure 605--616
W. Rittgen Controlled branching processes and their
applications to normal and malignant
haematopoiesis . . . . . . . . . . . . . 617--626
G. Del Grosso and
A. Gerardi and
F. Marchetti Lateral diffusion and eigenvalue
estimates . . . . . . . . . . . . . . . 627--634
Carlos A. Braumann Population growth in random environments 635--641
Hans A. J. Metz and
Herman Dienske and
Gerrit de Jonge and
Felix A. Putters Continuous-time Markov chains as models
for animal behaviour . . . . . . . . . . 643--658
Anonymous Tenth International Cell Cycle
Conference . . . . . . . . . . . . . . . 659--659
P. Hiltmann and
P. Lory On oxygen diffusion in a spherical cell
with Michaelis--Menten oxygen uptake
kinetics . . . . . . . . . . . . . . . . 661--664
Timothy F. Havel and
Irwin D. Kuntz and
Gordon M. Crippen The theory and practice of distance
geometry . . . . . . . . . . . . . . . . 665--720
S. Parvathamma and
Rathna Devanathan Microcontinuum approach to the pulsatile
flow in tubes with and without
longitudinal vibration . . . . . . . . . 721--737
Jang H. Youn and
Hee C. Kim and
Hong K. Lee and
Byoung G. Min Computed insulin profiles for
normalization of glycemia in diabetic
patients . . . . . . . . . . . . . . . . 739--748
Jesper Larsen and
Henrik Lund-Andersen and
Bent Krogsaa Transient transport across the
blood-retina barrier . . . . . . . . . . 749--758
Chuyan-Yih Lee Molecular mechanism of sodium
conductance changes in nerve: The role
of electron transfer and energy
migration . . . . . . . . . . . . . . . 759--780
A. Muir and
M. W. Warner The dynamics of symmetric nets . . . . . 781--792
V. P. Shukla Conditions for global stability of
two-species population models with
discrete time delay . . . . . . . . . . 793--805
Robert W. Bosserman Flow analysis sensitivities for models
of energy or material flow . . . . . . . 807--826
John V. Huddleston Population dynamics with age- and
time-dependent birth and death rates . . 827--836
Gerald Rosen Analytical solutions for distributions
of chemotactic bacteria . . . . . . . . 837--847
Steven H. Bertz On the complexity of graphs and
molecules . . . . . . . . . . . . . . . 849--855
V. K. Sud and
H. E. Von Gierke and
I. Kaleps and
H. L. Oestreicher Effects of periodic accelerations on
blood flow in arteries . . . . . . . . . 857--867
David Lurié and
Joaquim Valls and
Jorge Wagensberg Thermodynamic approach to biomass
distribution in ecological systems . . . 869--872
Aldo Rescigno and
James S. Beck and
H. Joseph Goren Determination of dependence of binding
parameters on receptor occupancy --- A
correction . . . . . . . . . . . . . . . 873--874
Anonymous Announcements . . . . . . . . . . . . . 875--875
Yasuhiro Takeuchi and
Norihiko Adachi Existence and bifurcation of stable
equilibrium in two-prey, one-predator
communities . . . . . . . . . . . . . . 877--900
Daniel S. Levine Bifurcating periodic solutions for a
class of age-structured predator--prey
systems . . . . . . . . . . . . . . . . 901--915
Francisco Lara Ochoa and
J. D. Murray A non-linear analysis for spatial
structure in a reaction--diffusion model 917--930
Roberto R. Kampfner and
Michael Conrad Computational modeling of evolutionary
learning processes in the brain . . . . 931--968
Roberto R. Kampfner and
Michael Conrad Sequential behavior and stability
properties of enzymatic neuron networks 969--980
Angelika Wörz-Busekros and
Peter Lange Dynamics of a continuous culture with
catalysis of the growth-limiting
substrate by an enzyme of the cells . . 981--990
H. L. Freedman and
V. Sree Hari Rao The trade-off between mutual
interference and time lags in
predator--prey systems . . . . . . . . . 991--1004
John K.-J. Li A new similarity principle for cardiac
energetics . . . . . . . . . . . . . . . 1005--1011
Gordon M. Schoepfle and
John T. Tarvin and
Richard M. Martin Simulated tetanic hyperpolarization by
sodium loading of a neuronal system in
which active transport is linked to the
Frankenhaeuser--Huxley equations . . . . 1013--1028
A. H. Louie Categorical system theory and the
phenomenological calculus . . . . . . . 1029--1045
A. H. Louie Categorical system theory . . . . . . . 1047--1072
G. Monticelli and
F. Celentano Further properties of the two-membrane
model . . . . . . . . . . . . . . . . . 1073--1096
Anonymous Announcement . . . . . . . . . . . . . . 1097--1097
Martin Supnick On the measurement of shapes . . . . . . 1--10
P. Schuster and
K. Sigmund Random selection --- A simple model
based on linear birth and death
processes . . . . . . . . . . . . . . . 11--17
D. Lauffenburger and
C. R. Kennedy and
R. Aris Traveling bands of chemotactic bacteria
in the context of population growth . . 19--40
Jarl V. Hägglund and
George Eisenman and
John P. Sandblom Single-salt behavior of a symmetrical
$4$-site channel with barriers at its
middle and ends . . . . . . . . . . . . 41--80
Willem Kuyk A catastrophe theoretic model of heat
regulation in homeothermic animals . . . 81--102
J. C. Misra and
S. I. Singh Pulse wave velocities in the aorta . . . 103--114
M. A. Khanin and
I. B. Bukharov A mathematical model of the pathological
functional state of the oxygen transport
system . . . . . . . . . . . . . . . . . 115--125
Akira Kamiya and
Razaq Bukhari and
Tatsuo Togawa Adaptive regulation of wall shear stress
optimizing vascular tree function . . . 127--137
Grayson C. Brown Stability in an insect-pathogen model
incorporating age-dependent immunity and
seasonal host reproduction . . . . . . . 139--153
Basil C. Baltzis and
A. G. Fredrickson Coexistence of two microbial populations
competing for a renewable resource in a
non-predator--prey system . . . . . . . 155--174
S. S. De Random predator-prey interactions in a
varying environment: Extinction or
survival . . . . . . . . . . . . . . . . 175--184
J. V. Huddleston Population dynamics with age- and
time-dependent birth and death rates . . 185--185
Rosemarie Swanson A unifying concept for the amino acid
code . . . . . . . . . . . . . . . . . . 187--203
A. J. Franko and
H. I. Freedman Model of diffusion of oxygen to
spheroids grown in stationary medium ---
I. Complete spherical symmetry . . . . . 205--217
M. Sobel and
S. R. Bernard and
V. R. R. Uppuluri and
C. W. Nestor Four-urn catenary model for excretion 219--227
D. C. Rees A general solution for the steady-state
kinetics of immobilized enzyme systems 229--234
Gerald Rosen Stability of spatially heterogeneous
steady-state distributions of
oxygen-chemotactic aerobic/anaerobic
bacteria . . . . . . . . . . . . . . . . 235--246
J. M. Bateman and
T. R. Harris Capillary operators . . . . . . . . . . 247--268
P. Nandapurkar and
V. Hlavacek Concentration-dependent diffusion
coefficient and dissipative structures 269--282
J. Van Pelt and
R. W. H. Verwer Cuttrees in the topological analysis of
branching patterns . . . . . . . . . . . 283--294
James H. Case and
Paul S. Fisher Long-term memory modules . . . . . . . . 295--326
William H. E. Day Properties of Levenshtein metrics on
sequences . . . . . . . . . . . . . . . 327--332
Gerald Rosen Commensalism of methane-producing and
motile aerobic bacteria in certain
freshwater wetlands . . . . . . . . . . 333--336
Anonymous Announcement . . . . . . . . . . . . . . 337--337
Paul E. Phillipson and
Peter Schuster and
Fritz Kemler Dynamical machinery of a biochemical
clock . . . . . . . . . . . . . . . . . 339--355
Thomas C. Gard Persistence in stochastic food web
models . . . . . . . . . . . . . . . . . 357--370
Jon Reed and
Nils C. Stenseth Evolution of cannibalism in an
age-structured population . . . . . . . 371--377
Neal L. Oden and
Kwang-Tsao Shao An algorithm to equiprobably generate
all directed trees with $k$ labeled
terminal nodes and unlabeled interior
nodes . . . . . . . . . . . . . . . . . 379--387
Keith Horsfield and
Alison Thurlbeck Computer simulation of the geometry of
the human bronchial tree . . . . . . . . 389--398
H. K. Leung Stability analysis of a stochastic model
for biomolecular selection . . . . . . . 399--406
J. Grasman The mathematical modeling of entrained
biological oscillators . . . . . . . . . 407--422
Sarah J. Nelson A stochastic model of the effects of
ionizing radiation on mammalian cells in
vitro . . . . . . . . . . . . . . . . . 423--446
Raymond Leblanc and
Gerald M. Lefebvre A stochastic model of bacterial spore
germination . . . . . . . . . . . . . . 447--460
Anonymous Editorial: Software survey section . . . i--iv
Hugo M. Martinez Foreword . . . . . . . . . . . . . . . . 461--465
Anonymous Margaret Oakley Dayhoff, 1925--1983 . . 467--472
Michael S. Waterman General methods of sequence comparison 473--500
Peter H. Sellers Pattern recognition in genetic sequences
by mismatch density . . . . . . . . . . 501--514
M. S. Waterman and
R. Arratia and
D. J. Galas Pattern recognition in several
sequences: Consensus and alignment . . . 515--527
Judith E. Dayhoff Distinguished words in data sequences:
Analysis and applications to neural
coding and other fields . . . . . . . . 529--543
Bruce C. Orcutt and
Winona C. Barker Searching the protein sequence database 545--552
M. L. Fredman Algorithms for computing evolutionary
similarity measures with length
independent gap penalties . . . . . . . 553--566
Michael S. Waterman and
Marcela D. Perlwitz Line geometries for sequence comparisons 567--577
Dan Davison and
Keith H. Thompson A non-metric sequence alignment program 579--590
Michael Zuker and
David Sankoff RNA secondary structures and their
prediction . . . . . . . . . . . . . . . 591--621
Rosemarie Swanson A vector representation for amino acid
sequences . . . . . . . . . . . . . . . 623--639
M. A. Jiménez-Montaño On the syntactic structure of protein
sequences and the concept of grammar
complexity . . . . . . . . . . . . . . . 641--659
H. A. Saroff The uniqueness of protein sequences.
Uniqueness diagrams for the Dayhoff file
--- 1984 . . . . . . . . . . . . . . . . 661--672
Timothy Havel and
Kurt Wüthrich A distance geometry program for
determining the structures of small
proteins and other macromolecules from
nuclear magnetic resonance measurements
of intramolecular $^1$H--$^1$H
proximities in solution . . . . . . . . 673--698
John R. Jungck and
Robert M. Friedman Mathematical tools for molecular
genetics data: an annotated bibliography 699--744
A. H. Louie and
R. L. Somorjai Stieltjes integration and differential
geometry: a model for enzyme
recognition, discrimination, and
catalysis . . . . . . . . . . . . . . . 745--764
Kevin G. Kirby and
Michael Conrad The enzymatic neuron as a
reaction--diffusion network of cyclic
nucleotides . . . . . . . . . . . . . . 765--783
J. S. Clowes and
G. D. Wassermann Genetic control theory of developmental
events . . . . . . . . . . . . . . . . . 785--825
G. Avanzolini and
A. Cappello The characteristics method applied to
the study of muscle dynamics . . . . . . 827--844
C. C. Walker Beyond the binary case in random nets 845--857
Kazuaki Narita One-dimensional food chain equations and
their generalization . . . . . . . . . . 859--868
W. Timischl Influence of landscape on the spread of
an infection . . . . . . . . . . . . . . 869--877
H. G. Klinger A simple solution of the non-stationary
heat transport problem in capillarized
biological tissue . . . . . . . . . . . 879--889
L. E. Bobisud and
C. J. Potratz Cannibalism in clumped populations . . . 891--901
José Argémi and
Hél\`ene Chagneux and
Christian Ducreux and
Maurice Gola Qualitative study of a dynamical system
for metrazol-induced paroxysmal
depolarization shifts . . . . . . . . . 903--922
Ralph Stinebrickner $s$-Consensus trees and indices . . . . 923--935
V. K. Sud and
G. S. Sekhon Blood flow subject to a single cycle of
body acceleration . . . . . . . . . . . 937--949
Harry A. Saroff A note on the evaluation of similarity
(homology) of short sequences with long
sequences . . . . . . . . . . . . . . . 951--961
Gerald Rosen Characterizing conditions for
generalized Verhulst logistic growth of
a biological population . . . . . . . . 963--965
Gerald Rosen Comment on biomass diversity in ecology 967--969
Michael Conrad Physik der Selbstorganization und
Evolution. (German) [Physics of
self-organization and evolution] . . . . 971--972
Anonymous Announcements . . . . . . . . . . . . . 973--974
Anonymous Editorial: Software survey section . . . i--iv
J. Honerkamp and
G. Mutschler and
R. Seitz Coupling of a slow and a fast oscillator
can generate bursting . . . . . . . . . 1--21
G. C. Taylor Primitivity of products of Leslie
matrices . . . . . . . . . . . . . . . . 23--34
V. K. Sud and
G. S. Sekhon Arterial flow under periodic body
acceleration . . . . . . . . . . . . . . 35--53
J. C. Misra and
S. I. Singh Distribution of stresses in the left
ventricular wall of the intact heart . . 53--70
S. E. D. Alian and
D. A. Linkens Mode analysis of a tubular structure of
coupled non-linear oscillators for
digestive-tract modelling . . . . . . . 71--110
A. Giro and
J. A. Padro and
J. Valls and
J. Wagensberg Monte Carlo simulation of an ecosystem:
a matching between two levels of
observation . . . . . . . . . . . . . . 111--122
Leonid I. Titomir and
Peter Kneppo Simultaneous analysis of the cardiac
electric and magnetic fields using the
scalar multipole expansion . . . . . . . 123--143
N. Anderson and
A. M. Arthurs Analytical bounding functions for
diffusion problems with
Michaelis--Menten kinetics . . . . . . . 145--153
Jean-Robert Derome Biomathematiques . . . . . . . . . . . . 155--155
T. F. Havel and
I. D. Kuntz and
B. Crippen The theory and practice of distance
geometry . . . . . . . . . . . . . . . . 157--157
Anonymous Editorial: Software survey section . . . i--iv
Hugo M. Martinez Editor's comments . . . . . . . . . . . 159--159
Anatol Rapoport Applications of game-theoretic concepts
in biology . . . . . . . . . . . . . . . 161--192
Mary G. Leitnaker and
Peter Purdue Non-linear compartmental systems:
extensions of S. R. Bernard's urn model 193--204
K. O. Bowman and
L. R. Shenton and
S. R. Bernard Study of age dependent half-life of
iodine in man: a reinforcement-depletion
urn model . . . . . . . . . . . . . . . 205--213
William H. E. Day and
F. R. McMorris A formalization of consensus index
methods . . . . . . . . . . . . . . . . 215--229
H. K. Leung Expansion of the master equation for a
biomolecular selection model . . . . . . 231--238
Lloyd Demetrius and
Peter Schuster and
Karl Sigmund Polynucleotide evolution and branching
processes . . . . . . . . . . . . . . . 239--262
B. M. Pötscher Moments and order statistics of
extinction times in multitype branching
processes and their relation to random
selection models . . . . . . . . . . . . 263--272
Michael J. Katz and
Edwin B. George Fractals and the analysis of growth
paths . . . . . . . . . . . . . . . . . 273--286
M.-P. Malice and
C. Lefevre On linear stochastic compartmental
models in discrete time . . . . . . . . 287--293
L. H. Erbe and
H. I. Freedman Modeling persistence and mutual
interference among subpopulations of
ecological communities . . . . . . . . . 295--304
Ronald W. H. Verwer and
Jaap Van Pelt Topological analysis of binary tree
structures when occasional
multifurcations occur . . . . . . . . . 305--316
Chun Chiang Depolarized potassium currents and time
delay in nerve membrane . . . . . . . . 317--320
Anonymous Announcements . . . . . . . . . . . . . 321--321
Anonymous Editorial: Software survey section . . . i--iv
J. Van Pelt and
R. W. H. Verwer Growth models (including terminal and
segmental branching) for topological
binary trees . . . . . . . . . . . . . . 323--336
M. M. Domach and
R. Armstrong and
M. S. Jhon Cell mass concentration variance
resulting from fluctuations in the
incoming nutrient concentration to a
chemostat . . . . . . . . . . . . . . . 337--342
John S. Nicolis and
Ichiro Tsuda Chaotic dynamics of information
processing: The ``magic number seven
plus--minus two'' revisited . . . . . . 343--365
Peter Cariani and
Narendra S. Goel On the computation of the tertiary
structure of globular proteins --- IV.
Use of secondary structure information 367--407
Michael A. B. Deakin and
T. O. Neild and
R. G. Turner The extension of two-dimensional cable
theory to arteries and arterioles . . . 409--424
Ludvik Bass The unidirectional flux transient as a
tool for quantifying parallel
diffusional pathways through membranes.
Exact solution for two pathways . . . . 425--434
Anonymous Editorial: Software survey section . . . i--iv
Hugo M. Martinez Editor's comments . . . . . . . . . . . 435--435
Dan Davison Sequence similarity (`Homology')
searching for molecular biologists . . . 437--474
A. Babloyantz and
A. Bellemans Pattern regulation in
reaction--diffusion systems --- the
problem of size invariance . . . . . . . 475--487
Fortunata Solimano The existence of stable equilibria in
Volterra predator--prey systems
represented by loop graphs . . . . . . . 489--494
Hilmi Demiray Effects of twist on pulse waves in
arteries . . . . . . . . . . . . . . . . 495--502
Herbert D. Landahl and
Javier Garzón and
Nancy M. Lee Mathematical modeling of opiate binding
to mouse brain membrane . . . . . . . . 503--512
Mark F. Schumaker and
W. Horsthemke The influence of internal fluctuations
and external noise on the gene frequency
in a haploid population . . . . . . . . 513--533
John Sourdis A method for numbering binary rooted and
unrooted phylogenies and their
hypothetical taxonomic units . . . . . . 535--543
K. Haldar Effects of the shape of stenosis on the
resistance to blood flow through an
artery . . . . . . . . . . . . . . . . . 545--550
Rajani R. Joshi On control of the function of the
sodium-potassium pump in malignant cells 551--564
G. A. Ferron and
B. Haider and
W. G. Kreyling A method for the approximation of the
relative humidity in the upper human
airways . . . . . . . . . . . . . . . . 565--589
Anonymous Editorial: Software survey section . . . i--iv
Anonymous Editorial: Software survey section . . . i--iv
Charles J. Lumsden Hierarchical behavior in fit dynamical
systems . . . . . . . . . . . . . . . . 591--612
H. S. Guha and
T. K. Chaudhury Flow in an arteriosclerotic blood vessel
with rigid permeable wall . . . . . . . 613--627
Sayuri Masui and
Charles J. Lumsden A mathematical approach to semantic
network development . . . . . . . . . . 629--650
J. M. Bateman Capillary operators --- II . . . . . . . 651--668
Mark H. Holmes A theoretical analysis for determining
the nonlinear hydraulic permeability of
a soft tissue from a permeation
experiment . . . . . . . . . . . . . . . 669--683
B. J. Messinger-Rapport and
Y. Rudy Effects of the torso boundary and
internal conductivity interfaces in
electrocardiography: an evaluation of
the `Infinite medium' approximation . . 685--694
Anonymous Editorial: Software survey section . . . i--iv
Hugo M. Martinez Editor's comments . . . . . . . . . . . 695--695
P. E. Kloeden and
A. I. Mees Chaotic phenomena . . . . . . . . . . . 697--738
T. G. Hallam and
M. N. Antonios An environ analysis for nonlinear
compartment models . . . . . . . . . . . 739--748
Gordon M. Schoepfle and
John T. Tarvin and
Richard M. Martin Dependence of tetanic hyperpolarization
on pump conductance in the
cyanide-treated \bionameXenopus node . . 749--755
Peter R. Greene Stress-strain behavior for curved
exponential strips . . . . . . . . . . . 757--764
S. N. Majhi and
L. Usha A mathematical note on the
Fahraeus--Lindqvist effect in power law
fluid . . . . . . . . . . . . . . . . . 765--769
Jesus Lopez-Sanchez and
Alberto Perez de Vargas Zygotic algebra for two linked loci with
sexually different recombination rates 771--782
Angshutosh Khan and
Debajyoti Bhaumik and
Binayak Dutta-Roy The possible role of solitonic processes
during A to B conformational changes in
DNA . . . . . . . . . . . . . . . . . . 783--789
Milton Sobel and
S. R. Bernard and
V. R. R. Uppuluri On the distribution of the time required
to remove white balls from an URN . . . 791--797
Anonymous Third International Summer School on
Mathematical Modelling in Physiology and
Clinical Medicine . . . . . . . . . . . 799--799
Anonymous Editorial: Software Survey Section . . . i--iv
Jean-Pierre Boon and
Brigitte Herpigny Model for chemotactic bacterial bands 1--19
Subhendu Ghosh and
Anjali Mookerjee A model for cooperative ligand binding
at complementary sites of DNA . . . . . 21--27
Alan M. Weinstein An equation for flow in the renal
proximal tubule . . . . . . . . . . . . 29--57
Grant G. Thompson and
W. Michael Booty and
William J. Liss and
Charles E. Warren An isoclinal approach to the comparative
statics of biological communities . . . 59--75
Roger V. Jean An interpretation of Fujita's frequency
diagrams in phyllotaxis . . . . . . . . 77--86
Gerald Rosen Existence of steady-state probability
distributions in multilocus models for
genotype evolution . . . . . . . . . . . 87--95
John K.-J. Li Dominance of geometric overelastic
factors in pulse transmission through
arterial branching . . . . . . . . . . . 97--103
Anonymous Seventeenth Annual Meeting of the
Classification Society of North America 105--105
Anonymous Editorial: Software survey section . . . i--iv
Willem Kuyk Servocontrol of the heart rate in
homeothermic animals: On recognizing
butterfly catastrophy models in biology 107--124
S. Pal and
D. S. Pal Galerkin's finite element--Laplace
transform technique to transient heat
migration in human skin and subcutaneous
tissues . . . . . . . . . . . . . . . . 125--136
Gary W. Harrison Multiple stable equilibria in a
predator-prey system . . . . . . . . . . 137--148
R. Varón and
A. Román and
F. García and
F. García Carmona Transient phase kinetics of activation
of human plasminogen . . . . . . . . . . 149--166
Narendra S. Goel and
Carlos F. Doggenweiler and
Richard L. Thompson Simulation of cellular compaction and
internalization in mammalian embryo
development as driven by minimization of
surface energy . . . . . . . . . . . . . 167--187
Michael S. Waterman and
Jerrold R. Griggs Interval graphs and maps of DNA . . . . 189--195
J. Van Pelt and
R. W. H. Verwer Topological properties of binary trees
grown with order-dependent branching
probabilities . . . . . . . . . . . . . 197--211
P. K. Tapaswi and
A. K. Saha Pattern formation and morphogenesis: a
reaction--diffusion model . . . . . . . 213--228
R. C. Duggan and
A. M. Goodman Pointwise bounds for a nonlinear heat
conduction model of the human head . . . 229--236
Anonymous 1986 Gordon Research Conference on
Theoretical Biology and Biomathematics 237--237
Anonymous Editorial: Software survey section . . . i--iv
William R. Greco and
Michael C. Kohn Guest Editors' foreword . . . . . . . . 239--240
W. R. Greco The role of simulation in
biomathematical modeling . . . . . . . . 241--251
Howard E. Skipper On mathematical modeling of critical
variables in cancer treatment (goals:
Better understanding of the past and
better planning in the future) . . . . . 253--278
A. J. Coldman and
J. H. Goldie A stochastic model for the origin and
treatment of tumors containing
drug-resistant cells . . . . . . . . . . 279--292
Daniel B. Menzel and
Robert L. Wolpert Chemical carcinogenesis and toxicity
models: Matching complexity to
objectives . . . . . . . . . . . . . . . 293--307
Kenneth B. Bischoff Physiological pharmacokinetics . . . . . 309--322
Charles E. Donaghey Cell kinetics simulation languages . . . 323--336
Robert C. Jackson Kinetic simulation of anticancer drug
effects on metabolic pathway fluxes: Two
case studies . . . . . . . . . . . . . . 337--351
J. Courtland White Use of the circuit simulation program
SPICE2 for analysis of the metabolism of
anticancer drugs . . . . . . . . . . . . 353--380
G. W. Swan Cancer chemotherapy: Optimal control
using the Verhulst--Pearl equation . . . 381--404
J. Mailen Kootsey Future directions in computer simulation 405--415
Michael C. Kohn Strategies for computer modeling . . . . 417--426
J. Mailen Kootsey and
Michael C. Kohn and
Michael D. Feezor and
Glen R. Mitchell and
Peter R. Fletcher SCoP: an interactive simulation control
program for micro- and minicomputers . . 427--441
Carol M. Newton Conference retrospective: an appropriate
modeling infrastructure for cancer
research . . . . . . . . . . . . . . . . 443--452
Anonymous First Conference of the International
Federation of Classification Societies 453--453
Anonymous Software survey section . . . . . . . . i--iv
A. B. Roy and
F. Solimano Global stability of partially closed
food-chains with resources . . . . . . . 455--468
Joseph W. H. So and
H. I. Freedman Persistence and global stability in a
predator--prey model consisting of three
prey genotypes with fertility
differences . . . . . . . . . . . . . . 469--484
H. I. Freedman and
K. Gopalsamy Global stability in time-delayed
single-species dynamics . . . . . . . . 485--492
H. I. Freedman and
G. S. K. Wolkowicz Predator-prey systems with group
defence: The paradox of enrichment
revisited . . . . . . . . . . . . . . . 493--508
K. M. Mehata and
D. Deivamoney Selvam A class of general stochastic
compartmental systems . . . . . . . . . 509--523
J. M. Bateman Heterogeneous organ models . . . . . . . 525--543
Charles J. Lumsden Receptors and functional linkage in
membrane permeability: a quantum
mechanical model . . . . . . . . . . . . 545--567
Charles B. Lawrence and
Daniel A. Goldman and
Robert T. Hood Optimized homology searches of the gene
and protein sequence data banks . . . . 569--583
Yasuhiro Takeuchi Diffusion effect on stability of
Lotka--Volterra models . . . . . . . . . 585--601
Stephen F. Altschul and
Bruce W. Erickson Optimal sequence alignment using affine
gap costs . . . . . . . . . . . . . . . 603--616
Stephen F. Altschul and
Bruce W. Erickson A nonlinear measure of subalignment
similarity and its significance levels 617--632
Stephen F. Altschul and
Bruce W. Erickson Locally optimal subalignments using
nonlinear similarity functions . . . . . 633--660
G. D. Wassermann The wiring-in of neural nets revisited 661--680
K. Gopalsamy Convergence in a resource-based
competition system . . . . . . . . . . . 681--699
Robert Rosen Adaptability: The significance of
variability from molecule to ecosystem 701--703
Lee Segel Editorial announcement . . . . . . . . . i--iii
Anonymous Editorial: Software survey section . . . i--iv
I. Richard Lapidus The forum . . . . . . . . . . . . . . . iii--iv
John J. Tyson Book reviews . . . . . . . . . . . . . . iv--iv
S. S. De Stochastic model of population growth
and spread . . . . . . . . . . . . . . . 1--11
A. C. Ehresmann and
J.-P. Vanbremeersch Hierarchical evolutive systems: a
mathematical model for complex systems 13--50
Z. Liang and
H. Hart Bayesian image processing of data from
constrained source distributions --- I.
Non-valued, uncorrelated and correlated
constraints . . . . . . . . . . . . . . 51--74
H. Hart and
Z. Liang Bayesian image processing of data from
constrained source distributions --- II.
Valued, uncorrelated and correlated
constraints . . . . . . . . . . . . . . 75--91
Helmut Jürgensen and
Aristid Lindenmayer Inference algorithms for developmental
systems with cell lineages . . . . . . . 93--123
M. C. Baishya and
C. G. Chakraborti Non-equilibrium fluctuation in
Volterra--Lotka systems . . . . . . . . 125--131
Anonymous Announcements . . . . . . . . . . . . . 133--134
Lee A. Segel Editorial: Software survey section . . . i--iv
Wolfgang Kliemann A stochastic dynamical model for the
characterization of the geometrical
structure of dendritic processes . . . . 135--152
Gerald M. Saidel and
Evan D. Morris and
Guy M. Chisolm III Transport of macromolecules in arterial
wall in vivo: a mathematical model and
analytical solutions . . . . . . . . . . 153--169
Ingrid Torrång and
Allan Gut and
Lena Holm-Rutili and
Karl Johan Åbrink A probabilistic approach for evaluating
a technique for an indirect monitoring
of the capillary blood flow to the
gastric parietal cells . . . . . . . . . 171--185
Rajani R. Joshi On reliability analysis of DNA repair
systems . . . . . . . . . . . . . . . . 187--216
Erik Sjòntoft and
Carsten Edmund \em In vivo determination of Young's
modulus for the human cornea . . . . . . 217--232
Christoph Berding On the heterogeneity of
reaction--diffusion generated pattern 233--252
Gerald Rosen Time delays produced by essential
nonlinearity in population growth models 253--255
Anonymous Editorial: Software survey section . . . i--iv
J. C. Misra and
S. I. Singh A study on the non-linear flow of blood
through arteries . . . . . . . . . . . . 257--277
K. Haldar Oscillatory flow of blood in a stenosed
artery . . . . . . . . . . . . . . . . . 279--287
H. A. Erbay and
S. Erbay and
H. Demiray Pulse waves in prestressed arteries . . 289--305
Kazuaki Tarumi and
Helmut Schwegler A nonlinear treatment of the protocell
model by a boundary layer approximation 307--320
Ichiro Aoki Entropy balance of white-tailed deer
during a winter night . . . . . . . . . 321--327
Richard P. Gosselin and
Robert E. Gosselin The kinetics of solute clearance by a
single tissue capillary of limited
permeability: Explicit solutions of two
models and their bounds . . . . . . . . 329--349
Akira Kamiya and
Shinya Takeda and
Masahiro Shibata Optimum capillary number for oxygen
delivery to tissue in man . . . . . . . 351--361
Ronald W. H. Verwer and
Jaap Van Pelt and
André J. Noest Parameter estimation in topological
analysis of binary tree structures . . . 363--378
Anonymous Editorial: Software survey section . . . i--iv
H. D. Landahl and
G. Gold and
G. M. Grodsky Model of synthesis and release of
insulin from rat islet $ \beta $-cells
and the effect of pretreatment with
tolbutamide . . . . . . . . . . . . . . 379--394
Bruce A. Luxon Solution of large compartmental models
using numerical transform inversion . . 395--402
H. Westcott Vayo Model geometries for sickled
erythrocytes . . . . . . . . . . . . . . 403--411
K. Horsfield and
M. J. Woldenberg and
C. L. Bowes Sequential and synchronous growth models
related to vertex analysis and branching
ratios . . . . . . . . . . . . . . . . . 413--429
E. Beretta and
Y. Takeuchi Global stability of single-species
diffusion Volterra models with
continuous time delays . . . . . . . . . 431--448
Ichiro Aoki Entropy budgets of deciduous plant
leaves and a theorem of oscillating
entropy production . . . . . . . . . . . 449--460
William H. E. Day Computational complexity of inferring
phylogenies from dissimilarity matrices 461--467
Barry R. Zeeberg and
Henry N. Wagner, Jr. Analysis of three- and four-compartment
models for in vivo
radioligand-neuroreceptor interaction 469--486
Bernard J. Geurts and
Frederik W. Wiegel Fractional exponential decay in the
capture of ligands by randomly
distributed traps in one dimension . . . 487--494
Henry C. Tuckwell and
James A. Koziol Logistic population growth under random
dispersal . . . . . . . . . . . . . . . 495--506
Robert P. McIntosh and
Glenn Webb and
James P. Keener and
Joan L. Aron Book reviews . . . . . . . . . . . . . . 507--517
Anonymous Editorial: Software survey section . . . i--iv
Y. Almirantis and
G. Nicolis Morphogenesis in an asymmetric medium 519--530
Jorge Wagensberg and
Joaquim Valls The [extended] maximum entropy formalism
and the statistical structure of
ecosystems . . . . . . . . . . . . . . . 531--538
Heinrich Reinhart and
Holzhütter Hermann-Georg and
Schuster Stefan A theoretical approach to the evolution
and structural design of enzymatic
networks; Linear enzymatic chains,
branched pathways and glycolysis of
erythrocytes . . . . . . . . . . . . . . 539--595
P. Tracqui and
A. M. Perault-Staub and
G. Milhaud and
J. F. Staub Theoretical study of a two-dimensional
autocatalytic model for calcium dynamics
at the extracellular fluid-bone
interface . . . . . . . . . . . . . . . 597--613
M. R. S. Kulenovi\'c and
G. Ladas Linearized oscillations in population
dynamics . . . . . . . . . . . . . . . . 615--627
Leah Edelstein-Keshet Evolution through group selection . . . 629--647
Anonymous International Conference on Mathematical
Modelling in Science and Technology . . 649--649
Anonymous Editorial: Software survey section . . . i--iv
M. Klanchar and
J. M. Tarbell Modeling water flow through arterial
tissue . . . . . . . . . . . . . . . . . 651--669
H. Roozen Equilibrium and extinction in stochastic
population dynamics . . . . . . . . . . 671--696
V. P. Tyagi and
M. Abbas An exact analysis for a solute
transport, due to simultaneous dialysis
and ultrafiltration, in a hollow-fibre
artificial kidney . . . . . . . . . . . 697--717
H. D. Landahl Approximate solution for capillary
exchange models with and without axial
mixing . . . . . . . . . . . . . . . . . 719--727
Angshutosh Khan and
Debajyoti Bhaumik and
Binayak Dutta-Roy Charge trapping by solitions --- A
possible transport mechanism in
macromolecular systems . . . . . . . . . 729--735
Tom Head Formal language theory and DNA: an
analysis of the generative capacity of
specific recombinant behaviors . . . . . 737--759
Anonymous Book reviews . . . . . . . . . . . . . . 761--776
Jane Cronin Scanlon The forum . . . . . . . . . . . . . . . 777--777
E. R. Carson Announcements . . . . . . . . . . . . . 779--780
Lee A. Segel and
Hugo M. Martinez Editorial . . . . . . . . . . . . . . . i--ii
Anonymous Editorial: Software survey section . . . i--iv
An-Shen Qi Multiple solutions of a model describing
cancerous growth . . . . . . . . . . . . 1--17
Christopher Roy Illert and
Daniela Reverberi Holography reveals the soft anatomy of
ancient cephalopods . . . . . . . . . . 19--34
R. M. Shoucri A mathematical derivation of the P--V
relation at end-systole . . . . . . . . 35--41
Michael Skondras RF-cell: a model for populations of
randomly interconnected neurons . . . . 43--66
Paul Cull Stability of discrete one-dimensional
population models . . . . . . . . . . . 67--75
Stephen F. Altschul and
Bruce W. Erickson Significance levels for biological
sequence comparison using non-linear
similarity functions . . . . . . . . . . 77--92
R. P. Gosselin and
R. E. Gosselin The kinetics of solute clearance by a
single tissue capillary of limited
permeability: Explicit solutions of two
models and their bounds . . . . . . . . 93--94
Anonymous 1988 Gordon Conference on Theoretical
Biology and Biomathematics . . . . . . . 95--95
Anonymous Software survey section . . . . . . . . i--iv
Webb Miller and
Eugene W. Myers Sequence comparison with concave
weighting functions . . . . . . . . . . 97--120
Harold W. Lewis III and
Narendra S. Goel and
Richard L. Thompson Simulation of cellular compaction and
internalization in mammalian embryo
development --- II. Models for spherical
embryos . . . . . . . . . . . . . . . . 121--142
F. Ventriglia Computational simulation of activity of
cortical-like neural systems . . . . . . 143--185
Frank Guess and
Matthew Witten On the incompatibility of Gompertz or
Weibull survival dynamics with
exponentially distributed individual
lifespans . . . . . . . . . . . . . . . 187--192
A. T. Winfree and
R. M. Feldman and
Masatoshi Nei and
David G. Stork Book reviews . . . . . . . . . . . . . . 193--207
Anonymous Software survey section . . . . . . . . i--iv
L. Ferrante and
G. Koch Identifiability of DNA distribution from
flow cytometric data with cell debris 209--225
P. E. Rapp and
R. A. Latta and
A. I. Mees Parameter-dependent transitions and the
optimal control of dynamical diseases 227--253
K. Toko and
M. Nosaka and
T. Fujiyoshi and
K. Yamafuji and
K. Ogata Periodic band pattern as a dissipative
structure in ion transport systems with
cylindrical shape . . . . . . . . . . . 255--288
Eric P. Salathe Mathematical studies of capillary-tissue
exchange . . . . . . . . . . . . . . . . 289--311
Jacques Bélair and
Leon Glass and
Donald C. Mikulecky and
Carl Hirschie Johnson and
C. Van den Broeck and
Lev Ginzburg Book reviews . . . . . . . . . . . . . . 313--328
Anonymous Software survey section . . . . . . . . i--iv
Dulal Pal and
N. Rudraiah and
Rathna Devanathan A couple stress model of blood flow in
the microcirculation . . . . . . . . . . 329--344
Gerald Rosen HIV spread in the San Francisco cohort:
Scaling of the effective logistic rate
for seropositivity . . . . . . . . . . . 345--349
Jia Li Persistence in discrete age-structured
population models . . . . . . . . . . . 351--366
\vS. Balá\vz and
E. \vSturdík and
J. Augustín Subcellular distribution of compounds in
biosystems . . . . . . . . . . . . . . . 367--378
David J. Wollkind and
John B. Collings and
Jesse A. Logan Metastability in a temperature-dependent
model system for predator--prey mite
outbreak interactions on fruit trees . . 379--409
G. B. Ermentrout and
Kamil A. Grajski Book reviews . . . . . . . . . . . . . . 411--419
Anonymous Announcements . . . . . . . . . . . . . 421--422
Anonymous Software survey section . . . . . . . . i--iv
Barry R. Zeeb\`erg and
Ralph C. Reid and
Katherine A. Murphy and
Richard C. Reba Theoretical effects of radioligand
diffusional gradients and microscopic
neuroreceptor distribution in in vivo
kinetic studies . . . . . . . . . . . . 423--444
J. Wagensberg and
J. Valls and
J. Bermudez Biological adaptation and the
mathematical theory of information . . . 445--464
Nikola Samardzija and
Larry D. Greller Explosive route to chaos through a
fractal torus in a generalized
Lotka--Volterra model . . . . . . . . . 465--491
S. McKee and
G. W. Gould A simple mathematical model of the
thermal death of microorganisms . . . . 493--501
H. R. Akçakaya and
L. R. Ginzburg and
D. Slice and
L. B. Slobodkin The theory of population dynamics ---
II. Physiological delays . . . . . . . . 503--515
H. I. Freedman and
Quan Hongshun Interactions leading to persistence in
predator--prey systems with group
defence . . . . . . . . . . . . . . . . 517--530
Geoffrey K. Aldis The unstirred layer during osmotic flow
into a tubule . . . . . . . . . . . . . 531--545
Geoffrey K. Aldis The osmotic permeability of a tubule
wall . . . . . . . . . . . . . . . . . . 547--558
Xu Nan and
Xu Jinghua The fractal dimension of EEG as a
physical measure of conscious human
brain activities . . . . . . . . . . . . 559--565
G. B. Ermentrout Book reviews . . . . . . . . . . . . . . 567--576
Anonymous Critical issues in tumor
microcirculation, angiogenesis and
metastasis . . . . . . . . . . . . . . . 577--577
Anonymous Editorial: Software survey section . . . i--iv
Lee A. Segel On the validity of the steady state
assumption of enzyme kinetics . . . . . 579--593
Bertrand S. Clarke and
Jay E. Mittenthal and
Phillip A. Arcuri An extremal criterion for epimorphic
regeneration . . . . . . . . . . . . . . 595--634
Peter Schuster and
Jörg Swetina Stationary mutant distributions and
evolutionary optimization . . . . . . . 635--660
Vered Barenholz-Paniry and
Jacob S. Ishay and
Zvi Grossman Rhythmic signalling and entrainment in
\bionameVespa orientalis larvae:
Characterization of the underlying
interactions . . . . . . . . . . . . . . 661--679
Istvan Gyori and
Seth Michelson and
John Leith Time-dependent subpopulation induction
in heterogeneous tumors . . . . . . . . 681--696
John A. Jacquez and
J. H. M. Thornley Book reviews . . . . . . . . . . . . . . 697--700
Anonymous The Society for Mathematical Biology is
pleased to announce an Annual Best Paper
Award of \$1000 . . . . . . . . . . . . 701--701
Anonymous Editorial: Software survey section . . . i--iv
Michael S. Waterman Foreword . . . . . . . . . . . . . . . . 1--4
Eugene W. Myers and
Webb Miller Approximate matching of regular
expressions . . . . . . . . . . . . . . 5--37
Ivan E. Auger and
Charles E. Lawrence Algorithms for the optimal
identification of segment neighborhoods 39--54
M. Zuker and
R. L. Somorjai The alignment of protein structures in
three dimensions . . . . . . . . . . . . 55--78
Gary A. Churchill Stochastic models for heterogeneous DNA
sequences . . . . . . . . . . . . . . . 79--94
Simon Tavaré and
Brenda Song Codon preference and primary sequence
structure in protein-coding regions . . 95--115
David Sankoff and
Martin Goldstein Probabilistic models of genome shuffling 117--124
R. Arratia and
L. Gordon Tutorial on large deviations for the
binomial distribution . . . . . . . . . 125--131
H.-J. Bandelt and
A. W. M. Dress Weak hierarchies associated with
similarity measures --- An additive
clustering technique . . . . . . . . . . 133--166
Vincent Ferretti and
David Sankoff A continuous analog for RNA folding . . 167--171
Peter L. Easthope and
Timothy F. Havel Computational experience with an
algorithm for tetrangle inequality bound
smoothing . . . . . . . . . . . . . . . 173--194
Anonymous Editorial: Software survey section . . . i--iv
Eduardo Mizraji Context-dependent associations in linear
distributed memories . . . . . . . . . . 195--205
Kazuaki Tarumi and
Ekkehard Mueller Wavelength selection mechanism in the
Gierer--Meinhardt model . . . . . . . . 207--216
Rob J. De Boer and
Pauline Hogeweg Stability of symmetric idiotypic
networks --- a critique of Hoffmann's
analysis . . . . . . . . . . . . . . . . 217--222
Rob J. De Boer and
Pauline Hogeweg Memory but no suppression in
low-dimensional symmetric idiotypic
networks . . . . . . . . . . . . . . . . 223--246
Henri Atlan Automata network theories in immunology:
Their utility and their
underdetermination . . . . . . . . . . . 247--253
I. Dvo\vrák and
J. \vSi\vska Analysis of metabolic systems with
complex slow and fast dynamics . . . . . 255--274
Göran O. Superber An alternative procedure for calculating
glucose consumption from
$2$-deoxyglucose uptake . . . . . . . . 275--286
F. C. Hoppensteadt and
John Ross and
Bruce Wallace Book reviews . . . . . . . . . . . . . . 287--291
Anonymous Editorial: Software survey section . . . i--iv
Gabriel K. Y. Lam Analysis of interaction for mixtures of
agents using the linear isobole . . . . 293--309
Ma Zhien and
Song Baojun and
Thomas G. Hallam The threshold of survival for systems in
a fluctuating environment . . . . . . . 311--323
Mónica C. Regalbuto and
William Strieder and
Arvind Varma Upper and lower bounds from the maximum
principle. Intracellular diffusion with
Michaelis--Menten kinetics . . . . . . . 325--335
Y. Yeshurun and
Z. Wollberg and
N. Dyn Prediction of linear and non-linear
responses of MGB neurons by system
identification methods . . . . . . . . . 337--346
K. H. Norwich and
C. N. L. Seburn and
E. Axelrad An informational approach to reaction
times . . . . . . . . . . . . . . . . . 347--358
Bernard J. Geurts Diffusion limited immunochemical sensing 359--379
Rob J. De Boer and
Pauline Hogeweg Unreasonable implications of reasonable
idiotypic network assumptions . . . . . 381--408
W. M. Schaffer and
G. A. Fox Plant strategies and the dynamics and
structure of plant communities . . . . . 409--411
Anonymous The Third World Conference on
Mathematics at the Service of Man . . . 413--413
Anonymous Editorial: Software survey section . . . i--iv
Lee A. Segel Editorial: Viewpoint . . . . . . . . . . 415--415
E. N. Trifonov The multiple codes of nucleotide
sequences . . . . . . . . . . . . . . . 417--432
Gábor Horváth Description of the birch leaf roller's
incisions for different leaves . . . . . 433--447
Si-shen Feng and
Richard Skalak and
Shu Chien Velocity distribution on the membrane of
a tank-treading red blood cell . . . . . 449--465
Sonja Sandberg and
Tamara E. Awerbuch Mathematical formulation and studies of
the risk parameters involved in HIV
transmission . . . . . . . . . . . . . . 467--474
Rachad M. Shoucri and
Jacques R. Rouleau and
John G. Kingma, Jr. and
Jean G. Dumesnil and
Gilles R. Dagenais Some applications of the P--V relation
to the study of left ventricular
performance . . . . . . . . . . . . . . 475--484
Tamiki Umeda A mathematical model for cell sorting,
migration and shape in the slug stage of
\bionameDictyostelium discoideum . . . . 485--500
H. Nakajima and
D. L. DeAngelis Resilience and local stability in a
nutrient-limited resource-consumer
system . . . . . . . . . . . . . . . . . 501--510
J. van Pelt and
R. W. H. Verwer and
H. B. M. Uylings Centrifugal-order distributions in
binary topological trees . . . . . . . . 511--536
G. B. Ermentrout and
Steven H. Strogatz and
Jeffrey C. Long Book reviews . . . . . . . . . . . . . . 537--544
Anonymous Announcement . . . . . . . . . . . . . . 545--546
Anonymous Editorial: Software survey section . . . i--iv
Lee A. Segel Editorial . . . . . . . . . . . . . . . 547--547
Kemble Yates and
Edward Pate A cascading development model for
amphibian embryos . . . . . . . . . . . 549--578
M. E. Wise and
G. J. J. M. Borsboom Two exceptional sets of physiological
clearance curves and their mathematical
form: Test cases? . . . . . . . . . . . 579--596
Jotun J. Hein An optimal algorithm to reconstruct
trees from additive distance data . . . 597--603
André Longtin and
John G. Milton Modelling autonomous oscillations in the
human pupil light reflex using
non-linear delay-differential equations 605--624
Craig Steven Peters and
Marc Mangel and
R. F. Costantino Stationary distribution of population
size in Tribolium . . . . . . . . . . . 625--638
Norman Kaplan and
Michael A. Savageau and
Ethan Akin and
John J. Tyson and
Bruce Wallace and
Robert Rosen Book reviews . . . . . . . . . . . . . . 639--655
Anonymous Editorial: Software survey section . . . i--iv
Fred L. Bookstein and
Richard A. Reyment Microevolution in Miocene
\bionameBrizalina (foraminifera) studied
by canonical variate analysis and
analysis of landmarks . . . . . . . . . 657--679
Colin J. Thompson and
J. B. McGuire On limits to perception and pattern
recognition . . . . . . . . . . . . . . 681--686
J. M. Cushing and
Jia Li On Ebenman's model for the dynamics of a
population with competing juveniles and
adults . . . . . . . . . . . . . . . . . 687--713
John L. Spouge and
Scott P. Layne and
Micah Dembo Analytic results for quantifying HIV
infectivity . . . . . . . . . . . . . . 715--730
S. Michelson and
K. Ito and
H. T. Tran and
J. T. Leith Stochastic models for subpopulation
emergence in heterogeneous tumors . . . 731--747
James Sneyd and
Daniel Tranchina Phototransduction in cones: an inverse
problem in enzyme kinetics . . . . . . . 749--784
Emilia Gutierrez and
Helena Almirall Temporal properties of some biological
systems and their fractal attractors . . 785--800
Fern Hunt and
G. B. Ermentrout and
Layne T. Watson and
Marek Kimmel Book reviews . . . . . . . . . . . . . . 801--809
Anonymous Editorial: Software survey section . . . i--iv
Marc Mangel Preface . . . . . . . . . . . . . . . . 1--1
John Rinzel Discussion: Electrical excitability of
cells, theory and experiment: Review of
the Hodgkin--Huxley foundation and an
update . . . . . . . . . . . . . . . . . 3--23
A. L. Hodgkin and
A. F. Huxley A quantitative description of membrane
current and its application to
conduction and excitation in nerve . . . 25--71
Jack D. Cowan Discussion: McCulloch--Pitts and related
neural nets from 1943 to 1989 . . . . . 73--97
Warren S. McCulloch and
Walter Pitts A logical calculus of the ideas immanent
in nervous activity . . . . . . . . . . 99--115
J. D. Murray Discussion: Turing's theory of
morphogenesis --- Its influence on
modelling biological pattern and form 117--152
A. M. Turing The Chemical Basis of Morphogenesis . . 153--197
William B. Provine Discussion: Population genetics . . . . 199--207
J. B. S. Haldane A mathematical theory of natural and
artificial selection --- I . . . . . . . 209--240
Sewall Wright Evolution in Mendelian populations . . . 241--295
R. A. Fisher On the dominance ratio . . . . . . . . . 297--318
Douglas A. Lauffenburger and
R. Allen White and
Donald L. DeAngelis and
George Kampis and
Eberhard O. Voit and
Steven Vogel and
Marc Mangel and
Markus Loeffler Book reviews . . . . . . . . . . . . . . 319--334
Anonymous SIAM 1990 Annual Meeting and Short
Course 15--20 July 1990 Hyatt Regency
Hotel, Chicago, IL . . . . . . . . . . . 335--337
Anonymous Editorial: Software survey section . . . i--iv
Henri Atlan and
Moshe Koppel The cellular computer DNA: Program or
data . . . . . . . . . . . . . . . . . . 335--348
Ingrid Rinsma and
Michael Hendy and
David Penny Distribution of the number of matches
between nucleotide sequences . . . . . . 349--358
Osamu Gotoh Optimal sequence alignment allowing for
long gaps . . . . . . . . . . . . . . . 359--373
V. A. A. Jansen and
R. M. Nisbet and
W. S. C. Gurney Generation cycles in stage structured
populations . . . . . . . . . . . . . . 375--396
F. Ventriglia Activity in cortical-like neural
systems: Short-range effects and
attention phenomena . . . . . . . . . . 397--429
L. Allison and
C. N. Yee Minimum message length encoding and the
comparison of macromolecules . . . . . . 431--453
Betty Tang and
Michael S. Waterman The expected fraction of clonable
genomic DNA . . . . . . . . . . . . . . 455--475
Robert Rosen and
W. Horsthemke and
Calvin J. Ribbens Book reviews . . . . . . . . . . . . . . 477--482
Anonymous Announcements . . . . . . . . . . . . . 483--484
Anonymous Editorial: Software survey section . . . i--iv
Peter F. Stadler and
Peter Schuster Dynamics of small autocatalytic reaction
networks --- I. Bifurcations, permanence
and exclusion . . . . . . . . . . . . . 485--508
Osamu Gotoh Consistency of optimal sequence
alignments . . . . . . . . . . . . . . . 509--525
Fima C. Klebaner Conditions for the unlimited growth in
multitype population size dependent
Galton--Watson processes . . . . . . . . 527--534
Johan Grasman A deterministic model of the cell cycle 535--547
J. A. Adam and
S. A. Maggelakis Diffusion regulated growth
characteristics of a spherical
prevascular carcinoma . . . . . . . . . 549--582
Daniel Goodman and
William J. Reed and
L. David Roper and
John J. Tyson Book reviews . . . . . . . . . . . . . . 583--596
Anonymous Editorial: Software survey section . . . i--iv
Nigel R. Franks and
Steve Bryant and
Richard Griffiths and
Lia Hemerik Synchronization of the behaviour within
nests of the ant \bionameLeptothorax
acervorum (Fabricius) --- I. Discovering
the phenomenon and its relation to the
level of starvation . . . . . . . . . . 597--612
Lia Hemerik and
Nick F. Britton and
N. R. Franks Synchronization of the behaviour within
nests of the ant \bionameLeptothorax
acervorum (Fabricius) --- II. Modelling
the phenomenon and predictions from the
model . . . . . . . . . . . . . . . . . 613--628
Ronald W. H. Verwer and
Jaap Van Pelt Analysis of binary trees when occasional
multifurcations can be considered as
aggregates of bifurcations . . . . . . . 629--641
Nils A. Òristland Starvation survival and body composition
in mammals with particular reference to
\bionameHomo sapiens . . . . . . . . . . 643--655
Eberhard O. Voit and
Pon N. Yi Comparison of isoeffect relationships in
radiotherapy . . . . . . . . . . . . . . 657--675
Stavros Busenberg and
S. Kishore Kumar and
Paul Austin and
Graeme Wake The dynamics of a model of a
plankton-nutrient interaction . . . . . 677--696
John J. Tyson and
Heike Schuster and
Martin Gerhardt and
Prem Ponka and
Greg Krukonis and
Susanne Schwinning and
James P. Keener Book reviews . . . . . . . . . . . . . . 697--708
Anonymous 1st European Conference on Mathematics
Applied to Biology and Medicine . . . . 709--709
Anonymous Editorial: Software survey section . . . i--iv
Steven J. Neumann and
Scott A. Berceli and
Eva M. Sevick and
A. Michael Lincoff and
ViJay S. Warty and
Arthur M. Brant and
Ira M. Herman and
Harvey S. Borovetz Experimental determination and
mathematical model of the transient
incorporation of cholesterol in the
arterial wall . . . . . . . . . . . . . 711--732
Jorge Wagensberg and
Ambrosio Garcia and
Ricard V. Sole Connectivity and information transfer in
flow networks: Two magic numbers in
ecology? . . . . . . . . . . . . . . . . 733--740
Didier G. Arqu\`es and
Christian J. Michel A model of DNA sequence evolution . . . 741--772
R. F. Mott and
T. B. L. Kirkwood and
R. N. Curnow An accurate approximation to the
distribution of the length of the
longest matching word between two random
DNA sequences . . . . . . . . . . . . . 773--784
F. Solimano and
G. I. Bischi and
M. Bianchi and
L. Rossi and
M. Magnani A nonlinear three-compartiment model for
the administration of
2',3'-dideoxycytidine by using red blood
cells as bioreactors . . . . . . . . . . 785--796
Leah Edelstein-Keshet and
Vassiliki Betty Smocovitis and
Joel Keizer Book reviews . . . . . . . . . . . . . . 797--805
Anonymous Editorial: Software survey section . . . i--iii
Roy M. Anderson Discussion: The Kermack--McKendrick
epidemic threshold theorem . . . . . . . 1--32
W. O. Kermack and
A. G. McKendrick Contributions to the mathematical theory
of epidemics --- I . . . . . . . . . . . 33--55
W. O. Kermack and
A. G. McKendrick Contributions to the mathematical theory
of epidemics --- II. The problem of
endemicity . . . . . . . . . . . . . . . 57--87
W. O. Kermack and
A. G. McKendrick Contributions to the mathematical theory
of epidemics --- III. Further studies of
the problem of endemicity . . . . . . . 89--118
Catherine A. Toft and
Marc Mangel Discussion: From individuals to
ecosystems; the papers of Skellam,
Lindeman and Hutchinson . . . . . . . . 119--134
J. G. Skellam Random dispersal in theoretical
populations . . . . . . . . . . . . . . 135--165
Raymond L. Lindeman The trophic-dynamic aspect of ecology 167--191
G. Evelyn Hutchinson Population studies: Animal ecology and
demography . . . . . . . . . . . . . . . 193--213
William J. Reed Discussion: Bioeconomics. An essay on
the classic papers of H. Scott Gordon,
Milner B. Schaefer and Harold Hotelling 215--229
H. Scott Gordon The economic theory of a common-property
resource: The fishery . . . . . . . . . 231--252
Milner B. Schaefer Some aspects of the dynamics of
populations important to the management
of the commercial marine fisheries . . . 253--279
Harold Hotelling The economics of exhaustible resources 281--312
George Némethy and
Michael Conrad and
Michael Ruse and
Robert Rosen and
G. B. Ermentrout Book reviews . . . . . . . . . . . . . . 313--326
Anonymous Resource management and behavioural
ecology: a Conference in Celebration of
the 60th Birthday of Colin Clark, 24--26
July 1991, University of British
Columbia, Vancouver, B.C. . . . . . . . 327--327
Steven Jaffe Autocatalytic membrane conductance and
memory . . . . . . . . . . . . . . . . . 327--343
Liaofu Luo and
Hong Li The statistical correlation of
nucleotides in protein-coding DNA
sequences . . . . . . . . . . . . . . . 345--353
Bernard Derrida and
Luca Peliti Evolution in a flat fitness landscape 355--382
C. D. Thron The secant condition for instability in
biochemical feedback control --- I. The
role of cooperativity and saturability 383--401
C. D. Thron The secant condition for instability in
biochemical feedback control --- II.
Models with upper Hessenberg Jacobian
matrices . . . . . . . . . . . . . . . . 403--424
Gábor Horváth and
Dezsö Varjú On the structure of the aerial visual
field of aquatic animals distorted by
refraction . . . . . . . . . . . . . . . 425--441
Larry S. Liebovitch and
Tibor I. Tóth Distributions of activation energy
barriers that produce stretched
exponential probability distributions
for the time spent in each state of the
two state reaction $ A
\rightleftharpoons B $ . . . . . . . . . 443--455
Roman R. Poznanski A generalized tapering equivalent cable
model for dendritic neurons . . . . . . 457--467
Bärbel M. R. Stadler and
Peter F. Stadler Small autocatalytic reaction networks
--- III. Monotone growth functions . . . 469--485
Marek Kimmel and
David Axelrod and
G. B. Ermentrout and
Frank Stewart and
Khidir W. Hilu and
Lee A. Segel and
Joan L. Aron and
Norman C. Gilinsky Book reviews . . . . . . . . . . . . . . 487--503
William J. Nowack and
George C. Theodoridis The thalamocortical contribution to
epilepsy . . . . . . . . . . . . . . . . 505--523
V. P. Saxena and
Kamal Raj Pardasani Effect of dermal tumours on temperature
distribution in skin with variable blood
flow . . . . . . . . . . . . . . . . . . 525--536
Y. Aumann and
H. Parnas Evaluation of the time course of
neurotransmitter release from the
measured PSC and MPSC . . . . . . . . . 537--555
Hiromi Seno Predator's invasion into an isolated
patch with spatially heterogeneous prey
distribution . . . . . . . . . . . . . . 557--577
Alicia L. Carriquiry and
William P. Ireland and
Wolfgang Kliemann and
Etsuro Uemura Statistical evaluation of dendritic
growth models . . . . . . . . . . . . . 579--589
S. B. Charnick and
E. S. Fisher and
D. A. Lauffenburger Computer simulations of cell-target
encounter including biased cell motion
toward targets: Single and multiple
cell-target simulations in two
dimensions . . . . . . . . . . . . . . . 591--621
Edward D. Weinberger Spatial stability analysis of Eigen's
quasispecies model and the less than
five membered hypercycle under global
population regulation . . . . . . . . . 623--638
Seth Michelson and
John Leith Autocrine and paracrine growth factors
in tumor growth: a mathematical model 639--656
John J. Jeka and
J. A. S. Kelso and
Raymond Kapral and
William Troy and
Tim Sauer Book reviews . . . . . . . . . . . . . . 657--663
Rudolf M. Dünki The estimation of the Kolmogorov entropy
from a time series and its limitations
when performed on EEG . . . . . . . . . 665--678
F. R. McMorris and
R. C. Powers Consensus weak hierarchies . . . . . . . 679--684
Lorenzo Cazzador Analysis of oscillations in yeast
continuous cultures by a new simplified
model . . . . . . . . . . . . . . . . . 685--700
P. K. Maini and
M. R. Myerscough and
K. H. Winter and
J. D. Murray Bifurcating spatially heterogeneous
solutions in a chemotaxis model for
biological pattern generation . . . . . 701--719
Roseanne M. Ford and
Douglas A. Lauffenburger Analysis of chemotactic bacterial
distributions in population migration
assays using a mathematical model
applicable to steep or shallow
attractant gradients . . . . . . . . . . 721--749
Brian K. Davis Variations in polymer fitness at
elevated mutation rates . . . . . . . . 751--768
W. Glunt and
T. L. Hayden and
Wei-Min Liu The embedding problem for predistance
matrices . . . . . . . . . . . . . . . . 769--796
Tim Sauer and
Peter Richter and
William J. Floyd and
Brian Storrie Book reviews . . . . . . . . . . . . . . 797--804
Wayne M. Getz A neural network for processing
olfactory-like stimuli . . . . . . . . . 805--823
S. R. Thomas Effect of varying salt and urea
permeabilities along descending limbs of
Henle in a model of the renal medullary
urine concentrating mechanism . . . . . 825--843
Gerald Rosen Rook's tour representation of the
genetic code . . . . . . . . . . . . . . 845--851
David J. Balding and
David C. Torney Statistical analysis of DNA fingerprint
data for ordered clone physical mapping
of human chromosomes . . . . . . . . . . 853--879
M. A. Lewis and
P. Grindrod One-way blocks in cardiac tissue: a
mechanism for propagation failure in
Purkinje fibres . . . . . . . . . . . . 881--899
Jyh-Ping Hsu and
Tsue-Hwa Chen A kinetic analysis of the germination of
fungal spores . . . . . . . . . . . . . 901--909
Jianguo Wu and
John L. Vankat A system dynamics model of island
biogeography . . . . . . . . . . . . . . 911--940
Leah Edelstein-Keshet and
G. B. Ermentrout and
James R. Griesemer Book reviews . . . . . . . . . . . . . . 941--951
Anonymous 3rd International Conference on
Mathematical Population Dynamics 1--5
June 1992, University of Pau, France . . 953--953
Bertrand S. Clarke and
Jay E. Mittenthal Modularity and reliability in the
organization of organisms . . . . . . . 1--20
Avidan U. Neumann and
Gérard Weisbuch Window automata analysis of population
dynamics in the immune system . . . . . 21--44
E. Olofsen and
J. Degoede and
R. Heijungs A maximum likelihood approach to
correlation dimension and entropy
estimation . . . . . . . . . . . . . . . 45--58
Richard Mott Maximum-likelihood estimation of the
statistical distribution of
Smith--Waterman local sequence
similarity scores . . . . . . . . . . . 59--75
M. R. Myerscough and
J. D. Murray Analysis of propagating pattern in a
chemotaxis system . . . . . . . . . . . 77--94
Alan Y. K. Wong and
Alexandre Fabiato and
James B. Bassingthwaighthe Model of calcium-induced calcium release
mechanism in cardiac cells . . . . . . . 95--116
J. R. Lobry and
J. P. Flandrois and
G. Carret and
A. Pave Monod's bacterial growth model revisited 117--122
F. M. Phelps IV Optimal sex ratio as a function of EGG
incubation temperature in the
crocodilians . . . . . . . . . . . . . . 123--148
Daniel Goodman and
Robert Rosen and
W. M. Schaffer Book reviews . . . . . . . . . . . . . . 149--161
Gordon R. Munro Mathematical bioeconomics and the
evolution of modern fisheries economics 163--184
William J. Reed and
Hector Echavarría Heras The conservation and exploitation of
vulnerable resources . . . . . . . . . . 185--207
Spiro E. Stefanou and
James E. Wilen License values in restricted access
fisheries . . . . . . . . . . . . . . . 209--218
Jon M. Conrad A bioeconomic model of the Pacific
whiting . . . . . . . . . . . . . . . . 219--239
David A. Levy and
Chris C. Wood Review of proposed mechanisms for
sockeye salmon population cycles in the
Fraser River . . . . . . . . . . . . . . 241--261
Ray Hilborn and
Robert B. Kennedy Spatial pattern in catch rates: a test
of economic theory . . . . . . . . . . . 263--273
Louis W. Botsford Further analysis of Clark's delayed
recruitment model . . . . . . . . . . . 275--293
Veijo Kaitala and
Wayne M. Getz Sex ratio genetics and the
competitiveness of parasitic wasps . . . 295--311
Bart T. De Stasio, Jr. and
Nelson G. Hairston, Jr. Environmental variability and the
persistence of multiple emergence
strategies . . . . . . . . . . . . . . . 313--334
Karen Price Territorial bequeathal by red squirrel
mothers: a dynamic model . . . . . . . . 335--354
John M. McNamara and
Alasdair I. Houston Risk-sensitive foraging: a review of the
theory . . . . . . . . . . . . . . . . . 355--378
Constantinos Goutis and
David W. Winkler Hungry chicks and mortal parents: a
state-variable approach to the breeding
seasons of birds . . . . . . . . . . . . 379--400
Bernard D. Roitberg and
W. G. Friend A general theory for host seeking
decisions in mosquitoes . . . . . . . . 401--412
Marc Mangel Rate maximizing and state variable
theories of diet selection . . . . . . . 413--422
Michael Mesterton-Gibbons On the iterated prisoner's dilemma in a
finite population . . . . . . . . . . . 423--443
Jin Yoshimura and
William M. Shields Components of uncertainty in clutch-size
optimization . . . . . . . . . . . . . . 445--464
A. I. Houston and
J. M. McNamara and
H. C. J. Godfray The effect of variability on host
feeding and reproductive success in
parasitoids . . . . . . . . . . . . . . 465--476
Jerry Nedelman and
Patrick Heagerty and
Chip Lawrence Quantitative PCR: Procedures and
precisions . . . . . . . . . . . . . . . 477--502
J. M. Cushing and
Jia Li Intra-specific competition and density
dependent juvenile growth . . . . . . . 503--519
Michael Schöniger and
Michael S. Waterman A local algorithm for DNA sequence
alignment with inversions . . . . . . . 521--536
Alan M. Weinstein Analysis of volume regulation in an
epithelial cell model . . . . . . . . . 537--561
S. C. Chan and
A. K. C. Wong and
D. K. Y. Chiu A survey of multiple sequence comparison
methods . . . . . . . . . . . . . . . . 563--598
Eugene W. Myers and
Xiaoqiu Huang An $ O(N^2 \log N) $ restriction map
comparison and search algorithm . . . . 599--618
Mark Kot and
Gary S. Sayler and
Terry W. Schultz Complex dynamics in a model microbial
system . . . . . . . . . . . . . . . . . 619--648
Alan S. Perelson and
Gérand Weisbuch Modeling immune reactivity in secondary
lymphoid organs . . . . . . . . . . . . 649--672
Michael A. B. Deakin and
Robert A. R. Bywater and
S. J. Redman Determination of time-constants in
cables of finite length . . . . . . . . 673--686
Gordon A. Fox and
Ronald F. Fox and
Colin W. Clark Book reviews . . . . . . . . . . . . . . 687--694
G. E. Hutchinson Population studies: animal ecology and
demography . . . . . . . . . . . . . . . 695--695
Anonymous Announcements . . . . . . . . . . . . . 697--698
Avidan U. Neumann and
Gérard Weisbuch Dynamics and topology of idiotypic
networks . . . . . . . . . . . . . . . . 699--726
Subhendu Ghosh Ising model for B--Z transition in
supercoiled DNA . . . . . . . . . . . . 727--732
David Greenhalgh Vaccination in density-dependent
epidemic models . . . . . . . . . . . . 733--758
Jaap Van Pelt and
Harry B. M. Uylings and
Ronald W. H. Verwer and
Roberta J. Pentney and
Michael J. Woldenberg Tree asymmetry --- A sensitive and
practical measure for binary topological
trees . . . . . . . . . . . . . . . . . 759--784
Larry Goldstein and
Michael S. Waterman Poisson, compound Poisson, and process
approximations for testing statistical
significance in sequence comparisons . . 785--812
Gabriel K. Y. Lam The study of combined action of agents
using differential geometry of
dose-effect surfaces . . . . . . . . . . 813--826
Thomas C. Gard Stochastic models for toxicant-stressed
populations . . . . . . . . . . . . . . 827--837
René Lefever and
Jacques Hiernaux and
Jacques Urbain and
Patricia Meyers On the kinetics and optimal specificity
of cytotoxic reactions mediated by
T-lymphocyte clones . . . . . . . . . . 839--873
G. Hovav and
H. Parnas and
I. Parnas Neurotransmitter release: Facilitation
and three-dimensional diffusion of
intracellular calcium . . . . . . . . . 875--894
D. M. Wells and
J. A. S. Kelso and
Lisa Fauci and
Jacques Bélair Book reviews . . . . . . . . . . . . . . 895--901
Anonymous International School on Neural Modeling
and Neural Networks . . . . . . . . . . 903--903
Roman R. Poznanski Modelling the electrotonic structure of
starburst amacrine cells in the rabbit
retina: a functional interpretation of
dendritic morphology . . . . . . . . . . 905--928
B. O. Ebaseh-Onofa and
J. H. Matis Compartmental models with Erlang
distributed residence times and random
rate coefficients . . . . . . . . . . . 929--938
Ricard V. Solé and
Joaquim Valls Nonlinear phenomena and chaos in a Monte
Carlo simulated microbial ecosystem . . 939--955
C. Zonneveld Polyandry and protandry in butterflies 957--976
S. I. Barry and
G. K. Aldis Flow-induced deformation from
pressurized cavities in absorbing porous
tissues . . . . . . . . . . . . . . . . 977--997
Ellen Baake and
Johannes P. Schlöder Modelling the fast fluorescence rise of
photosynthesis . . . . . . . . . . . . . 999--1021
Seth Michelson and
Doris Slate A mathematical model of the
P-glycoprotein pump as a mediator of
multidrug resistance . . . . . . . . . . 1023--1038
A. Palmer and
J. Brindley and
A. V. Holden Initiation and stability of reentry in
two coupled excitable fibers . . . . . . 1039--1056
William H. E. Day and
F. R. McMorris Consensus sequences based on plurality
rule . . . . . . . . . . . . . . . . . . 1057--1068
Anne Krislov Morris and
Wendy Kuhn Silk Use of a flexible logistic function to
describe axial growth of plants . . . . 1069--1081
Robert Rosen and
Steven H. Strogatz and
Josesph M. Mahaffy and
Joseph M. Mahaffy Book reviews . . . . . . . . . . . . . . 1083--1094
Keiichi Masutani Effects of survival thresholds upon
one-dimensional dynamics of
single-species populations . . . . . . . 1--13
Sergio Rinaldi and
Simona Muratori and
Yuri Kuznetsov Multiple attractors, catastrophes and
chaos in seasonally perturbed
predator--prey communities . . . . . . . 15--35
John Totafurno and
Matthew Bjerknes and
Hazel Cheng Estimation of the extent of the cutoff
region from the spatial distribution of
labelling and mitotic indices of
intestinal crypts of a fixed length . . 37--73
Ana Sendova-Franks and
Nigel R. Franks Task allocation in ant colonies within
variable environments (A study of
temporal polyethism: Experimental) . . . 75--96
Miguel Lara-Aparicio and
Santiago López de Medrano and
Beatriz Fuentes-Pardo and
Enrique Moreno-Sáenz A qualitative mathematical model of the
ontogeny of a circadian rhythm in
crayfish . . . . . . . . . . . . . . . . 97--110
W. G. Pritchard Scaling in the animal kingdom . . . . . 111--129
Xincai Luo and
Keith Taylor and
Paul G. Mezey Vertex mobility of polyhedra . . . . . . 131--140
Dan Gusfield Efficient methods for multiple sequence
alignment with guaranteed error bounds 141--154
Gábor Horváth and
Dezsö Varjú Theoretical study of the optimal shape
of the front profile of the lens in the
eye of the scallop, Pecten . . . . . . . 155--174
Yakov L. Fuxman Reproduction rate, feeding process, and
Leibich limitations in cell populations
--- Part 1. Feeding stochasticity and
reproduction rate . . . . . . . . . . . 175--195
Hugh C. Crenshaw Orientation by helical motion --- I.
Kinematics of the helical motion of
organisms with up to six degrees of
freedom . . . . . . . . . . . . . . . . 197--212
Hugh C. Crenshaw and
Leah Edelstein-Keshet Orientation by helical motion --- II.
Changing the direction of the axis of
motion . . . . . . . . . . . . . . . . . 213--230
Hugh C. Crenshaw Orientation by helical motion --- III.
Microorganisms can orient to stimuli by
changing the direction of their
rotational velocity . . . . . . . . . . 231--255
Anonymous Announcement . . . . . . . . . . . . . . 257--257
T. Kme\vt and
M. Stra\vskraba and
P. Mauersberger A mechanistic model of the adaptation of
phytoplankton photosynthesis . . . . . . 259--275
Mark P. van Veen and
Jaap van Pelt Terminal and intermediate segment
lengths in neuronal trees with finite
length . . . . . . . . . . . . . . . . . 277--294
Gabriel K. Y. Lam The differential aspects of the linear
isobole in the study of combined action
of agents . . . . . . . . . . . . . . . 295--313
James Sneyd and
Steven Girard and
David Clapham Calcium wave propagation by
calcium-induced calcium release: an
unusual excitable system . . . . . . . . 315--344
Robert W. Korn The geometry of elongating plant cells 345--364
Debbie L. Benson and
Jonathan A. Sherratt and
Philip K. Maini Diffusion driven instability in an
inhomogeneous domain . . . . . . . . . . 365--384
J. C. Nuño and
M. A. Andrade and
F. Morán and
F. Montero A model of an autocatalytic network
formed by error-prone self-replicative
species . . . . . . . . . . . . . . . . 385--415
J. C. Nuño and
M. A. Andrade and
F. Montero Non-uniformities and superimposed
competition in a model of an
autocatalytic network formed by
error-prone self-replicative species . . 417--449
Tamiki Umeda A thermodynamical model of cell
distributions in the slug of cellular
slime mold . . . . . . . . . . . . . . . 451--464
A. K. C. Wong and
S. C. Chan and
D. K. Y. Chiu A multiple sequence comparison method 465--486
Mats Gyllenberg Does time lag of nutrient utilization
justify Monod's model of bacterial
growth? . . . . . . . . . . . . . . . . 487--489
F. James Rohlf and
Herbert W. Hethcote and
Donald C. Mikulecky and
J.-V. Höltje Book reviews . . . . . . . . . . . . . . 491--502
Kun-Mao Chao and
Ross C. Hardison and
Webb Miller Constrained sequence alignment . . . . . 503--524
Anne Beuter and
Jacques Bélair and
Christiane Labrie and
Jacques Bélair Feedback and delays in neurological
diseases: a modeling study using
gynamical systems . . . . . . . . . . . 525--541
Scott Findlay and
Ligang Zheng Structural correlates of stability and
resilience in strong hierarchies . . . . 543--560
B. H. Havsteen and
M. Garcia-Moreno and
E. Valero and
M. C. Manjabacas and
R. Varón The kinetics of enzyme systems involving
activation of zymogens . . . . . . . . . 561--583
M. Schienbein and
H. Gruler Langevin equation, Fokker--Planck
equation and cell migration . . . . . . 585--608
C. Zonneveld and
S. A. L. M. Kooijman Comparative kinetics of embryo
development . . . . . . . . . . . . . . 609--635
Jonathan A. Sherratt and
Julian Lewis Stress-induced alignment of actin
filaments and the mechanics of cytogel 637--654
D. L. S. McElwain and
G. J. Pettet Cell migration in multicell spheroids:
Swimming against the tide . . . . . . . 655--674
Bela Novak and
G. B. Ermentrout and
Marc Mangel and
F. W. Schneider and
Keith A. Crandall and
Kerry L. Shaw and
Thomas Caraco and
Elaina M. Tuttle Book reviews . . . . . . . . . . . . . . 675--691
Anonymous Summer School on Nonlinear Systems in
Evolutionary and Population Biology . . 693--693
Boris Mirkin and
Fred S. Roberts Consensus functions and patterns in
molecular sequences . . . . . . . . . . 695--713
E. Beretta and
F. Solimano An optimal time control problem for the
administration of 2',3'-dideoxycytidine
by using red blood cells as bioreactors 715--730
Christl Donnelly and
Wendy Leisenring and
Phyllis Kanki and
Tamara Awerbuch and
Sonja Sandberg Comparison of transmission rates of
HIV-1 and HIV-2 in a cohort of
prostitutes in Senegal . . . . . . . . . 731--743
Rob J. De Boer and
Alan S. Perelson and
Ioannis G. Kevrekidis Immune network behavior --- I. From
stationary states to limit cycle
oscilations . . . . . . . . . . . . . . 745--780
Rob J. De Boer and
Alan S. Perelson and
Ioannis G. Kevrekidis Immune network behavior --- II. From
oscillations to chaos and stationary
states . . . . . . . . . . . . . . . . . 781--816
H. I. Freedman and
R. M. Mathsen Persistence in predator--prey systems
with ratio-dependent predator influence 817--827
John J. Jeka and
J. A. S. Kelso and
Tim Kiemel Pattern switching in human multilimb
coordination dynamics . . . . . . . . . 829--845
Linda J. S. Allen and
Mary K. Hannigan and
Monty J. Strauss Mathematical analysis of a model for a
plant-herbivore system . . . . . . . . . 847--864
Michael C. Reed Mathematics in medicine and the life
sciences . . . . . . . . . . . . . . . . 865--867
Jyh-Ping Hsu and
Wen-Chang Hsu and
Heng-Kwong Tsao Diffusion-enhanced bioreactions: a
hypothetical mechanism for plant cell
aggregation . . . . . . . . . . . . . . 869--889
Chris Tofts Algorithms for task allocation in ants.
(A study of temporal polyethism: Theory) 891--918
Lewi Stone and
Tom Berman Positive feedback in aquatic ecosystems:
The case of the microbial loop . . . . . 919--936
J. Guckenheimer and
J. S. Labouriau Bifurcation of the Hodgkin and Huxley
equations: a new twist . . . . . . . . . 937--952
Kai Velten and
Otto Richter Optimal maintenance investment of plants
and its dependence on environmental
conditions . . . . . . . . . . . . . . . 953--971
Houssine El Snoussi and
Rene Thomas Logical identification of all steady
states: The concept of feedback loop
characteristic states . . . . . . . . . 973--991
Seth Michelson and
John T. Leith Growth factors and growth control of
heterogeneous cell populations . . . . . 993--1011
Zvia Agur and
Michael LaBarbera and
George F. Estabrook and
Charles J. Brokaw Book reviews . . . . . . . . . . . . . . 1013--1024
Didier G. Arqu\`es and
Christian J. Michel Analytical expression of the
purine/pyrimidine codon probability
after and before random mutations . . . 1025--1038
Vincent Gadani and
Pierre Villon and
Jacques Manem and
Bruce Rittmann A new method to solve a non-steady-state
multispecies biofilm model . . . . . . . 1039--1061
Gérard Weisbuch and
Guillemette Duchateau Emergence of mutualism: Application of a
differential model to endosymbiosis . . 1063--1090
Russell W. Anderson and
Avidan U. Neumann and
Alan S. Perelson A Cayley tree immune network model with
antibody dynamics . . . . . . . . . . . 1091--1131
Bernhard Sulzer and
J. Leo van Hemmen and
Avidan U. Neumann and
Ulrich Behn Memory in idiotypic networks due to
competition between proliferation and
differentiation . . . . . . . . . . . . 1133--1182
Ron Unger and
John Moult Finding the lowest free energy
conformation of a protein is an NP-hard
problem: Proof and implications . . . . 1183--1198
Aviezri S. Fraenkel Complexity of protein folding . . . . . 1199--1210
Walter Fontana and
Leo W. Buss ``The arrival of the fittest'': Toward a
theory of biological organization . . . 1--64
Thomas Wilhelm and
Edda Hoffmann-Klipp and
Reinhart Heinrich An evolutionary approach to enzyme
kinetics: Optimization of ordered
mechanisms . . . . . . . . . . . . . . . 65--106
Geoffrey N. Tuck and
Hugh P. Possingham Optimal harvesting strategies for a
metapopulation . . . . . . . . . . . . . 107--127
Jonathan A. Sherratt Chemotaxis and chemokinesis in
eukaryotic cells: The Keller--Segel
equations as an approximation to a
detailed model . . . . . . . . . . . . . 129--146
Gabriela Sánchez-Mejorada and
Horacio Merchant-Larios and
Francisco Alonso-deFlorida and
Luis B. Morales Probability of mast cells to mediate
anaphylaxis in skeletal muscle . . . . . 147--160
Leah Edelstein-Keshet and
Ronald M. Shymko and
Werner Horsthemke and
R. Allen White Book reviews . . . . . . . . . . . . . . 161--170
Moshe Gitterman and
George H. Weiss Generalized theory of the kinetics of
tracers in biological systems . . . . . 171--186
Uwe Timm and
Akira Okubo Gyrotaxis: a plume model for
self-focusing micro-organisms . . . . . 187--206
Seth Michelson and
Doris Slate A mathematical model for the inhibition
of the multidrug resistance-associated
P-glycoprotein pump . . . . . . . . . . 207--223
K. A. Overholser and
N. A. Lomangino and
T. R. Harris and
J. D. Bradléy and
S. Bosan Deduction of pulmonary microvascular
hematocrit from indicator dilution
curves . . . . . . . . . . . . . . . . . 225--247
Mark P. Van Veen and
Jaap Van Pelt Neuritic growth rate described by
modeling microtubule dynamics . . . . . 249--273
Steven S. Skiena and
Gopalakrishnan Sundaram A partial digest approach to restriction
site mapping . . . . . . . . . . . . . . 275--294
Vladimir A. Kuznetsov and
Iliya A. Makalkin and
Mark A. Taylor and
Alan S. Perelson Nonlinear dynamics of immunogenic
tumors: Parameter estimation and global
bifurcation analysis . . . . . . . . . . 295--321
Li-Bing Zhang and
Chan-Ying Du and
An-Shen Qi Complex behaviours of AB model
describing idiotypic network . . . . . . 323--336
Marek Kimmel and
David N. Stivers Time-continuous branching walk models of
unstable gene amplification . . . . . . 337--357
Calvin Ribbens and
Matthew Witten Book reviews . . . . . . . . . . . . . . 359--363
D. J. Marsh Introduction . . . . . . . . . . . . . . 365--368
James D. Oliver III and
William M. Deen Random-coil model for glomerular sieving
of dextran . . . . . . . . . . . . . . . 369--389
Leon C. Moore and
Adam Rich and
Daniel Casellas Ascending myogenic autoregulation:
Interactions between tubuloglomerular
feedback and myogenic mechanisms . . . . 391--410
N.-H. Holstein-Rathlou and
D. J. Marsh A dynamic model of renal blood flow
autoregulation . . . . . . . . . . . . . 411--429
S. Randall Thomas and
George Dagher A kinetic model of rat proximal tubule
transport-load-dependent bicarbonate
reabsorption along the tubule . . . . . 431--458
Thomas A. Krahn and
Peter S. Aronson and
Alan M. Weinstein Weak acid permeability of a villous
membrane: Formic acid transport across
rat proximal tubule . . . . . . . . . . 459--490
J. Frank Jen and
John L. Stephenson Externally driven countercurrent
multiplication in a mathematical model
of the urinary concentrating mechanism
of the renal inner medulla . . . . . . . 491--514
Xianqun Wang and
Anthony S. Wexler and
Donald J. Marsh The effect of solution non-ideality on
membrane transport in three-dimensional
models of the renal concentrating
mechanism . . . . . . . . . . . . . . . 515--546
H. E. Layton and
E. Bruce Pitman A dynamic numerical method for models of
renal tubules . . . . . . . . . . . . . 547--565
E. Bruce Pitman and
H. E. Layton and
Leon C. Moore Numerical simulation of propagating
concentration profiles in renal tubules 567--586
Gül Civeleko\uglu and
Leah Edelstein-Keshet Modelling the dynamics of F-actin in the
cell . . . . . . . . . . . . . . . . . . 587--616
Miljenko Maru\vsic and
\vZeljko Bajzer and
Stanimir Vuk-Pavlovic and
James P. Freyer Tumor growth in vivo and as
multicellular spheroids compared by
mathematical models . . . . . . . . . . 617--631
C. Indermitte and
Th. M. Liebling and
H. Clémençon Culture analysis and external
interaction models of mycelial growth 633--664
Meira S. Falkovitz and
Eli Feinerman Minimum leaching scheduling of nitrogen
fertilization and irrigation . . . . . . 665--686
Lee A. Segel and
Eva Jäger Reverse engineering: a model for T-cell
vaccination . . . . . . . . . . . . . . 687--721
C. G. Phillips and
K. H. Parker and
W. Wang A model for flow through discontinuities
in the tight junction of the endothelial
intercellular cleft . . . . . . . . . . 723--741
Michael S. Waterman Parametric and ensemble sequence
alignment algorithms . . . . . . . . . . 743--767
Michael Conrad and
Donald L. DeAngelis Book reviews . . . . . . . . . . . . . . 769--774
Robert W. Korn Analysis of cell packets in elongating
plant tissue . . . . . . . . . . . . . . 775--794
Sharon Lubkin Unidirectional waves on rings: Models
for chiral preference of circumnutating
plants . . . . . . . . . . . . . . . . . 795--810
Arthur Sherman Anti-phase, asymmetric and aperiodic
oscillations in excitable cells --- I.
Coupled bursters . . . . . . . . . . . . 811--835
I. G. Minkevich and
A. Yu. Abramychev The dynamics of continuous microbial
culture described by cell age
distribution and concentration of one
substrate . . . . . . . . . . . . . . . 837--862
Wei-min Liu Nonlinear forecasting of hepatitis and
AIDS incidence . . . . . . . . . . . . . 863--873
Juan Carlos Nuño and
Pedro Tarazona Lifetimes of small catalytic networks 875--898
Gérard Weisbuch and
Mihaela Oprea Capacity of a model immune network . . . 899--921
Ding Da-Fu and
Qian Jiang and
Feng Zu-Kang A differential geometric treatment of
protein structure comparison . . . . . . 923--943
Uno Wennergren and
Per Weinerfelt and
Göran Forsling Comparative sensitivity analysis of
stable stage structures and reproductive
values . . . . . . . . . . . . . . . . . 945--957
Gabriel K. Y. Lam A general formulation of the concept of
independent action for the combined
effects of agents . . . . . . . . . . . 959--980
J. E. Truscott and
J. Brindley Ocean plankton populations as excitable
media . . . . . . . . . . . . . . . . . 981--998
Robert Rosen and
G. B. Ermantrout and
Steven H. Strogatz and
Michael Mesterton-Gibbons Book reviews . . . . . . . . . . . . . . 999--1008
Bernhard Sulzer and
J. Leo Van Hemmen and
Ulrich Behn Central immune system, the self and
autoimmunity . . . . . . . . . . . . . . 1009--1040
Prabhas V. Moghe and
Robert T. Tranquillo Stochastic model of chemoattractant
receptor dynamics in leukocyte
chemosensory movement . . . . . . . . . 1041--1093
S. Aharon and
H. Parnas and
I. Parnas The magnitude and significance of
Ca$^{2+}$ domains for release of
neurotransmitter . . . . . . . . . . . . 1095--1119
T. Eakin Intrinsic time scaling in survival
analysis: Application to biological
populations . . . . . . . . . . . . . . 1121--1141
Ke-Ning Sheng and
Joseph I. Naus Pattern matching between two non-aligned
random sequences . . . . . . . . . . . . 1143--1162
Bela Sevella and
Nicholas D. Stone and
Stephen P. Ellner and
Philip K. Maini and
William S. C. Gurney Book reviews . . . . . . . . . . . . . . 1163--1172
I. A. Kuzin Hypnosis modelling in neural networks 1--20
Peter F. Stadler and
Wolfgang Schnabl and
Christian V. Forst and
Peter Schuster Dynamics of small autocatalytic reaction
networks --- II. Replication, mutation
and catalysis . . . . . . . . . . . . . 21--61
John B. Collings Bifurcation and stability analysis of a
temperature-dependent mite
predator--prey interaction model
incorporating a prey refuge . . . . . . 63--76
T. G. Myers, OCIAM and
G. K. Aldis and
S. Naili Ion induced deformation of soft tissue 77--98
Kai Velten and
Otto Richter Optimal root/shoot-partitioning of
carbohydrates in plants . . . . . . . . 99--107
Jacques H. Boutet de Monvel and
Olivier C. Martin Memory capacity in large idiotypic
networks . . . . . . . . . . . . . . . . 109--136
Alan Y. K. Wong A kinetic model of coronary reactive
hyperemic response to transient ischemia 137--156
M. J. Navarro-Lozano and
E. Valero and
R. Varon and
F. Garcia-Carmona Kinetic study of an enzyme-catalysed
reaction in the presence of novel
irreversible-type inhibitors that react
with the product of enzymatic catalysis 157--168
Bruce West and
J. M. Cushing Book reviews . . . . . . . . . . . . . . 169--173
Beatriz Fuentes-Pardo and
Miguel Lara-Aparicio and
Santiago López de Medrano Perturbation of a circadian rhythm by
single and periodic signals and its
mathematical simulation . . . . . . . . 175--189
Robert Rognstad On the estimation of alternative
pathways of fatty acid oxidation in the
liver \em In vivo . . . . . . . . . . . 191--203
A. Kalay and
H. Parnas and
E. Shamir Neuronal growth via hybrid system of
self-growing and diffusion based grammar
rules: I . . . . . . . . . . . . . . . . 205--227
Robert M. Miura and
Mark Pernarowski Correlations of rates of insulin release
from islets and plateau fractions for $
\beta $-cells . . . . . . . . . . . . . 229--246
René Thomas and
Denis Thieffry and
Marcelle Kaufman Dynamical behaviour of biological
regulatory networks --- I. Biological
role of feedback loops and practical use
of the concept of the
loop-characteristic state . . . . . . . 247--276
Denis Thieffry and
René Thomas Dynamical behaviour of biological
regulatory networks --- II. Immunity
control in bacteriophage lambda . . . . 277--297
A. J. Hillesdon and
T. J. Pedley and
J. O. Kessler The development of concentration
gradients in a suspension of chemotactic
bacteria . . . . . . . . . . . . . . . . 299--344
Seth Michelson and
John T. Leith Interlocking triads of growth control in
tumors . . . . . . . . . . . . . . . . . 345--366
Mike Steel and
Mike Charleston Five surprising properties of
parsimoniously colored trees . . . . . . 367--375
Sharon Lubkin Phyllotaxis: a systemic study in plant
morphogenesis . . . . . . . . . . . . . 377--379
Yoosef Maghsoodi and
Eric P. M. Grist Optimal population stabilization and
control using the Leslie matrix model 381--399
C. Kohlmeier and
W. Ebenhöh The stabilizing role of cannibalism in a
predator--prey system . . . . . . . . . 401--411
Richard Bertram and
Manish J. Butte and
Tim Kiemel and
Arthur Sherman Topological and phenomenological
classification of bursting oscillations 413--439
Jacob S. Ishay and
Ada H. Abes and
Harry L. Chernobrov and
Vered Barenholz-Paniry and
Yisrael Parmet and
Camil Fuchs Building activity and longevity of
queenless groups of the Oriental hornet,
\bionameVespa orientalis . . . . . . . . 441--460
H. M. Byrne and
M. A. J. Chaplain Mathematical models for tumour
angiogenesis: Numerical simulations and
nonlinear wave solutions . . . . . . . . 461--486
Denis Barabé and
Roger V. Jean On the allometric growth of tissues in
fruits . . . . . . . . . . . . . . . . . 487--498
Marc Mangel and
George W. Swan and
Thomas G. Hallam Book reviews . . . . . . . . . . . . . . 499--506
W. G. Wilson and
E. McCauley and
A. M. De Roos Effect of dimensionality on
Lotka--Volterra predator-prey dynamics:
Individual based simulation results . . 507--526
Liaofu Luo and
Fengmin Ji and
Hong Li Fuzzy classification of nucleotide
sequences and bacterial evolution . . . 527--537
Peter T. Saunders and
Mae Wan Ho Reliable segmentation by successive
bifurcation . . . . . . . . . . . . . . 539--556
Robert Rognstad Dicarboxylic acid fluxes during
gluconeogenesis. No channelling of
mitochondrial oxalacetate . . . . . . . 557--568
Laura Weiss Maki and
Joel Keizer Mathematical analysis of a proposed
mechanism for oscillatory insulin
secretion in perifused HIT-15 cells . . 569--591
Linda M. Lawson and
Yvette H. Spitz and
Eileen E. Hofmann and
Robert Bryan Long A data assimilation technique applied to
a predator-prey model . . . . . . . . . 593--617
Hans Meinhardt and
Paul Fife and
Hal L. Smith and
Diana E. Woodward and
Alan Hastings and
Stuart G. Whittington Book reviews . . . . . . . . . . . . . . 619--630
Uwe Timm and
Akira Okubo Gyrotaxis: Interaction between algae and
flagellates . . . . . . . . . . . . . . 631--650
Jes Stollberg Density and diffusion limited
aggregation in membranes . . . . . . . . 651--677
Lisa J. Fauci and
Amy McDonald Sperm motility in the presence of
boundaries . . . . . . . . . . . . . . . 679--699
Alessandra Gragnani and
Sergio Rinaldi A universal bifurcation diagram for
seasonally perturbed predator--prey
models . . . . . . . . . . . . . . . . . 701--712
Shu-Guang Guan and
An-Shen Qi Contributions of memory B cells to
secondary immune response . . . . . . . 713--731
Seth Michelson and
John T. Leith A theoretical explanation of
``Concomitant resistance'' . . . . . . . 733--747
Yakov L. Fuxman Reproduction rate, feeding process, and
Liebig limitations in cell populations
--- II . . . . . . . . . . . . . . . . . 749--782
Anonymous An alternative derivation of Fuxman's
threshold result . . . . . . . . . . . . 783--786
M. \vDuri\vsová and
L. Dedík and
M. Balan Building a structured model of a complex
pharmacokinetic system with time delays 787--808
Galina N. Borisyuk and
Roman M. Borisyuk and
Alexander I. Khibnik and
Dirk Roose Dynamics and bifurcations of two coupled
neural oscillators with different
connection types . . . . . . . . . . . . 809--840
Bernhard Sulzer and
Gerard Weisbuch Idiotypic regulation of B cell
differentiation . . . . . . . . . . . . 841--864
R. R. Poznanski and
W. G. Gibson and
M. R. Bennett Electrotonic coupling between two CA3
hippocampal pyramidal neurons: a
distributed cable model with somatic
gap-junction . . . . . . . . . . . . . . 865--881
E. S. Kempner The mathematics of radiation target
analyses . . . . . . . . . . . . . . . . 883--898
Maureen E. Rush and
John Rinzel The potassium $A$-current, low firing
rates and rebound excitation in
Hodgkin--Huxley models . . . . . . . . . 899--929
K. A. Overholser and
N. A. Lomangino and
T. R. Harris and
J. D. Bradley and
S. Bosan Erratum to Deduction of pulmonary
microvascular hematocrit from indicator
dilution curves . . . . . . . . . . . . 931--933
G. B. Ermentrout Theoretical models in biology: The
origin of life, the immune system, and
the brain . . . . . . . . . . . . . . . 935--937
Paul Dixon and
Alistair Hobday and
George Sugihara Fractals in science . . . . . . . . . . 939--941
Alan Hastings Chaos in dynamical systems . . . . . . . 943--944
Stephen Ellner Coping with chaos: Analysis of chaotic
data and the exploitation of chaotic
systems . . . . . . . . . . . . . . . . 945--946
Lionel G. Harrison Models for embryonic periodicity . . . . 947--948
Mark W. Denny Life in moving fluids: The physical
biology of Flow . . . . . . . . . . . . 949--951
William R. Taylor A non-local gap-penalty for profile
alignment . . . . . . . . . . . . . . . 1--18
M. C. Manjabacas and
E. Valero and
M. García-Moreno and
C. Garrido and
R. Varón Kinetics of an autocatalytic zymogen
reaction in the presence of an inhibitor
coupled to a monitoring reaction . . . . 19--41
José A. M. Borghans and
Rob J. de Boer and
Lee A. Segel Extending the quasi-steady state
approximation by changing variables . . 43--63
Brian K. Davis A theory of evolution that includes
prebiotic self-organization and episodic
species formation . . . . . . . . . . . 65--97
Brian K. Davis Darwinian evolution by self-propagating
species under fractional order kinetics 99--101
Stephen Ellner Environmental fluctuations and the
maintenance of genetic diversity in age
or stage-structured populations . . . . 103--127
Hilmi Demiray An evolution of pulse speed in arteries 129--140
K. Manivannan and
R. T. Mathias and
E. Gudowska-Nowak Description of interacting channel
gating using a stochastic Markovian
model . . . . . . . . . . . . . . . . . 141--174
Narayan Behera Variational principles in evolution . . 175--202
David B. Fogel and
Mark A. Lewis Book reviews . . . . . . . . . . . . . . 203--206
Chris Cosner Variability, vagueness and comparison
methods for ecological models . . . . . 207--246
Joanna S. Jaworska and
Thomas G. Hallam and
T. Wayne Schultz A community model of ciliate Tetrahymena
and bacteria \bionameE. coli: Part I.
Individual-based models of
\bionameTetrahymena and \bionameE. coli
populations . . . . . . . . . . . . . . 247--264
Joanna S. Jaworska and
Thomas G. Hallam and
T. Wayne Schultz A community model of ciliate
\bionameTetrahymena and bacteria
\bionameE. coli: Part II. Interactions
in a batch system . . . . . . . . . . . 265--283
Rob J. de Boer and
Maarten C. Boerlijst and
Bernhard Sulzer and
Alan S. Perelson A new bell-shaped function for idiotypic
interactions based on cross-linking . . 285--312
Fred L. Bookstein Biometrics, biomathematics and the
morphometric synthesis . . . . . . . . . 313--365
Denise Kirschner and
G. F. Webb A model for treatment strategy in the
chemotherapy of AIDS . . . . . . . . . . 367--390
Brian Charlesworth and
Michael Mesterton-Gibbons and
Michael Neubert and
Sarah Little and
J. O. Kessler and
J. Demongeot and
Steven H. Strogatz and
Glenn T. Vickers Book reviews . . . . . . . . . . . . . . 391--407
F. Nekka and
S. Kyriacos and
C. Kerrigan and
L. Cartilier A model of growing vascular structures 409--424
John Carl Panetta A mathematical model of periodically
pulsed chemotherapy: Tumor recurrence
and metastasis in a competitive
environment . . . . . . . . . . . . . . 425--447
W. Schmidt and
E.-Ch. Müller A distance measure based on binary
character data and its application to
phylogeny reconstruction . . . . . . . . 449--469
N. F. Britton and
L. W. Partridge and
N. R. Franks A mathematical model for the population
dynamics of army ants . . . . . . . . . 471--492
A. Vermeulen and
J.-P. Rospars and
P. Lánský and
H. C. Tuckwell Coding of stimulus intensity in an
olfactory receptor neuron: Role of
neuron spatial extent and passive
dendritic backpropagation of action
potentials . . . . . . . . . . . . . . . 493--512
C. R. Thompson and
B. S. Gerstman and
S. L. Jacques and
M. E. Rogers Melanin granule model for laser-induced
thermal damage in the retina . . . . . . 513--553
Johan Grasman The expected extinction time of a
population within a system of
interacting biological populations . . . 555--568
Beno\^\it F. Morel and
Meghan A. Burke and
Jayant Kalagnanam and
Susan A. McCarthy and
David J. Tweardy and
Penelope A. Morel Making sense of the combined effect of
interleukin-2 and interleukin-4 on
lymphocytes using a mathematical model 569--594
Gail S. K. Wolkowicz and
Rick Durrett and
Mercedes Pascual and
Arthur L. Koch and
Yu. A. Kuznetsov and
W. M. Schaffer Book reviews . . . . . . . . . . . . . . 595--609
J. P. Armitstead and
C. D. Bertram and
O. E. Jensen A study of the bifurcation behaviour of
a model of flow through a collapsible
tube . . . . . . . . . . . . . . . . . . 611--641
Graeme D. Ruxton Density-dependent migration and
stability in a system of linked
populations . . . . . . . . . . . . . . 643--660
Eric Bonabeau and
Guy Theraulaz and
Jean-Louis Deneubourg Mathematical model of self-organizing
hierarchies in animal societies . . . . 661--717
Robert Costalat and
Jacques Burger Effect of enzyme organization on the
stability of Yates--Pardee pathways . . 719--737
Sabine Stöcker and
Daniel Weihs Foraging costs as a defining factor for
growth and asymptotic mass . . . . . . . 739--751
Stefan Mayer On the pressure and flow-rate
distributions in tree-like and
arterial-venous networks . . . . . . . . 753--785
Luke Olsen and
Jonathan A. Sherratt and
Philip K. Maini A mathematical model for
fibro-proliferative wound healing
disorders . . . . . . . . . . . . . . . 787--808
C. R. Thompson and
B. S. Gerstman and
S. L. Jacques and
M. E. Rogers Melanin granule model for laser-induced
thermal damage in the retina . . . . . . 809--810
Eric Renshaw and
Jon Seger and
J. W. Stubblefield Cera Book reviews . . . . . . . . . . . . . . 811--814
L. J. S. Allen and
E. J. Allen and
S. Ponweera A mathematical model for weed dispersal
and control . . . . . . . . . . . . . . 815--834
A. A. King and
W. M. Schaffer and
C. Gordon and
J. Treat and
M. Kot Weakly dissipative predator-prey systems 835--859
Michael Mesterton-Gibbons and
Michael J. Childress Constraints on reciprocity for
non-sessile organisms . . . . . . . . . 861--875
Robert Happel and
Robert Hecht and
Peter F. Stadler Autocatalytic networks with translation 877--905
William G. Wilson and
Roger M. Nisbet and
Alex H. Ross and
Carlos Robles and
Robert A. Desharnais Abrupt population changes along smooth
environmental gradients . . . . . . . . 907--922
Paul H. Berg and
Eberhard O. Voit and
Roger L. White A pharmacodynamic model for the action
of the antibiotic imipenem on
\bionamePseudomonas aeruginosa
populations \em in vitro . . . . . . . . 923--938
Hilmi Demiray Solitary waves in prestressed elastic
tubes . . . . . . . . . . . . . . . . . 939--955
Tibor Kme\vt Material recycling in a closed aquatic
ecosystem. I. Nitrogen transformation
cycle and preferential utilization of
ammonium to nitrate by phytoplankton as
an optimal control problem . . . . . . . 957--982
Tibor Kme\vt Material recycling in a closed aquatic
ecosystem. II. Bifurcation analysis of a
simple food-chain model . . . . . . . . 983--1000
M. N. Kuperman and
B. Von Haeften and
H. S. Wio Persistence of the weaker species in a
non-homogeneous competitive system:
Exact result through a quantum
mechanical analogy . . . . . . . . . . . 1001--1018
Herbert W. Hethcote Epidemic models: Their structure and
relation to data . . . . . . . . . . . . 1019--1022
J. She and
C. D. Bertram Numerical simulation of collapsible-tube
flows with sinusoidal forced
oscillations . . . . . . . . . . . . . . 1023--1046
Wynn L. Walker and
Julian Cook Drug delivery to brain tumors . . . . . 1047--1074
S. Aharon and
M. Bercovier and
H. Parnas Parallel computation enables precise
description of Ca$^{2+}$ distribution in
nerve terminals . . . . . . . . . . . . 1075--1097
Michael A. Fishman and
Lee A. Segel Modeling immunotherapy for allergy . . . 1099--1121
Chandrika B-Rao and
John Stewart Inverse analysis of empirical matrices
of idiotypic network interactions . . . 1123--1153
C. Le Sech and
A. Capderou Determination of pulmonary mean transit
time and cardiac output using a
one-dimensional model . . . . . . . . . 1155--1170
Richard Wu and
Tai Te Wu A novel intact circular dsDNA supercoil 1171--1185
Ignacio Barradas and
Hal Caswell and
Joel E. Cohen Competition during colonization vs
competition after colonization in
disturbed environments: a metapopulation
approach . . . . . . . . . . . . . . . . 1187--1207
Charles E. Smith and
Petr Lánsky and
Te-Hsin Lung Cycle-time and residence-time density
approximations in a stochastic model for
circulatory transport . . . . . . . . . 1--22
E. Sirot and
V. K\vrivan Adaptive superparasitism and
host-parasitoid dynamics . . . . . . . . 23--41
Dumitru Popescu and
Liviu Movileanu and
Gheorghe Victor and
Grigore Turcu Stability and instability properties of
aggregation of single chain amphiphiles
into binary mixtures . . . . . . . . . . 43--61
Richard A. Reyment Evolution of shape in Oligocene and
Miocene \bionameNotocarinovalva
(Ostracoda, Crustacea): a multivariate
statistical study . . . . . . . . . . . 63--87
D. P. Gaver and
P. A. Jacobs and
R. L. Carpenter and
J. G. Burkhart A mathematical model for intracellular
effects of toxins on DNA adduction and
repair . . . . . . . . . . . . . . . . . 89--106
R. W. Van Kirk and
M. A. Lewis Integrodifference models for persistence
in fragmented habitats . . . . . . . . . 107--137
Kunihiko Kaneko and
Tetsuya Yomo Isologous diversification: a theory of
cell differentiation . . . . . . . . . . 139--196
Lars Folke Olsen and
David B. Fogel Book reviews . . . . . . . . . . . . . . 197--204
M. I. S. Costa and
J. L. Boldrini Chemotherapeutic treatments: a study of
the interplay among drug resistance,
toxicity and recuperation from side
effects . . . . . . . . . . . . . . . . 205--232
Seth Michelson and
John T. Leith Positive feedback and angiogenesis in
tumor growth control . . . . . . . . . . 233--254
A. L. Jensen Matrix population model with
density-dependent recruitment for
assessment of age-structured wildlife
populations . . . . . . . . . . . . . . 255--262
R. Lefever and
O. Lejeune On the origin of tiger bush . . . . . . 263--294
Mariusz Kaczmarek and
Ravi P. Subramaniam and
Samuel R. Neff The hydromechanics of hydrocephalus:
Steady-state solutions for cylindrical
geometry . . . . . . . . . . . . . . . . 295--323
Bing Liu and
Rainer K. Sachs A two-backbone polymer model for
interphase chromosome geometry . . . . . 325--337
Christian Reidys and
Peter F. Stadler and
Peter Schuster Generic properties of combinatory maps:
Neutral networks of RNA secondary
structures . . . . . . . . . . . . . . . 339--397
G. Bard Ermentrout and
Svetlozar T. Rachev Book reviews . . . . . . . . . . . . . . 399--406
Anonymous Erratum . . . . . . . . . . . . . . . . 407--407
Nicholas A. M. Monk The community effect and
ectoderm--mesoderm interaction in
\bionameXenopus muscle differentiation 409--425
Veijo Kaitala and
Mikko Heino and
Wayne M. Getz Host-parasite dynamics and the evolution
of host immunity and parasite fecundity
strategies . . . . . . . . . . . . . . . 427--450
Alan M. Weinstein Dynamics of cellular homeostasis:
Recovery time for a perturbation from
equilibrium . . . . . . . . . . . . . . 451--481
Joseph I. Naus and
Ke-Ning Sheng Matching among multiple random sequences 483--496
Michael Doebeli and
Graeme D. Ruxton Controlling spatial chaos in
metapopulations with long-range
dispersal . . . . . . . . . . . . . . . 497--515
Rafael A. Barrio and
Limei Zhang and
Philip K. Maini Hierarchically coupled ultradian
oscillators generating robust circadian
rhythms . . . . . . . . . . . . . . . . 517--532
Bard Ermentrout and
Mark Lewis Pattern formation in systems with one
spatially distributed species . . . . . 533--549
Frank Van den Bosch and
Wilfried Gabriel Cannibalism in an age-structured
predator--prey system . . . . . . . . . 551--567
Petr Lánský and
Jana Velí\vsková and
Libor Velí\vsek An indirect method for absorption rate
estimation: Flurothyl-induced seizures 569--579
Chris Tuffley and
Mike Steel Links between maximum likelihood and
maximum parsimony under a simple model
of site substitution . . . . . . . . . . 581--607
Peter White and
James Powell Phase transition from environmental to
dynamic determinism in mountain pine
beetle attack . . . . . . . . . . . . . 609--643
Miloje M. Rako\vcevi\'c Two classes of the aminoacyl-tRNA
synthetases in correspondence with the
Codon path cube . . . . . . . . . . . . 645--648
V. L. Alexeyev and
A. P. Levich A search for maximum species abundances
in ecological communities under
conditional diversity optimization . . . 649--677
Mats Gyllenberg and
Ilkka Hanski and
Torsten Lindström Continuous versus discrete single
species population models with
adjustable reproductive strategies . . . 679--705
M. I. S. Costa and
J. L. Boldrini Conflicting objectives in chemotherapy
with drug resistance . . . . . . . . . . 707--724
Ole Lund and
Ole Sògaard Lund and
Gregers Gram and
Susanne Dam Nielsen and
Kristian Schònning and
Jens Ole Nielsen and
John-Erik Stig Hansen and
Erik Mosekilde Gene therapy of T helper cells in HIV
infection: Mathematical model of the
criteria for clinical effect . . . . . . 725--745
Micha Peleg and
Mark D. Normand and
Evi Damrau Mathematical interpretation of
dose-response curves . . . . . . . . . . 747--761
Denise E. Kirschner and
G. F. Webb Understanding drug resistance for
monotherapy treatment of HIV infection 763--785
Frank Hoppensteadt and
Harold M. Hastings and
Michael Mesterton-Gibbons and
K. A. Jane White and
Henry D. I. Abarbanel and
Michael G. Neubert and
Mark Pernarowski Book reviews . . . . . . . . . . . . . . 787--807
Vlastimil K\vrivan Dynamical consequences of optimal host
feeding on host-parasitoid population
dynamics . . . . . . . . . . . . . . . . 809--831
Jesus Gálvez and
Francisco Lajarin and
Pilar García-Peñarrubia Mathematical modeling of adhesion of
bacteria to host cell lines . . . . . . 833--856
Jesus Gálvez and
Francisco Lajarin and
Pilar García-Peñarrubia Penetration of host cell lines by
bacteria. Characteristics of the process
of intracellular bacterial infection . . 857--879
Barbara Bittner and
Sebastian Bonhoeffer and
Martin A. Nowak Virus load and antigenic diversity . . . 881--896
Bonawentura Kochel and
Waldemar Sajewicz A new measure of xenobiotic toxicity to
the first-line human defence system from
the time-resolved phagocyte luminescence 897--910
Michael Weiss and
Christina Stedtler and
Michael S. Roberts On the validity of the dispersion model
of hepatic drug elimination when
intravascular transit time densities are
long-tailed . . . . . . . . . . . . . . 911--929
M. Broom and
C. Cannings and
G. T. Vickers Multi-player matrix games . . . . . . . 931--952
C. Zoppou and
S. I. Barry and
G. N. Mercer Dynamics of human milk extraction: a
comparative study of breast feeding and
breast pumping . . . . . . . . . . . . . 953--973
Yannis Almirantis and
Astero Provata The ``clustered structure'' of the
purines/pyrimidines distribution in DNA
distinguishes systematically between
coding and non-coding sequences . . . . 975--992
Hilmi Demiray The effect of shear stress on solitary
waves in arteries . . . . . . . . . . . 993--1012
Gordon A. Fox and
Gregg Hartvigsen and
W. M. Schaffer and
Jonathan A. Sherratt and
R. V. O'Neill and
Athel Cornish-Bowden Book reviews . . . . . . . . . . . . . . 1013--1028
A. Suciu and
G. Civeleko\uglu and
Y. Tardy and
J.-J. Meister Model for the alignment of actin
filaments in endothelial cells subjected
to fluid shear stress . . . . . . . . . 1029--1046
R. Henery and
W. G. Gibson and
M. R. Bennett Quantal currents and potential in the
three-dimensional anisotropic bidomain
model of smooth muscle . . . . . . . . . 1047--1075
Paul D. Dale and
Jonathan A. Sherratt and
Philip K. Maini Role of fibroblast migration in collagen
fiber formation during fetal and adult
dermal wound healing . . . . . . . . . . 1077--1100
J. E. Truscott and
C. R. Webb and
C. A. Gilligan Asymptotic analysis of an epidemic model
with primary and secondary infection . . 1101--1123
M. Saleet Jafri and
Joel Keizer Agonist-induced calcium waves in
oscillatory cells: a biological example
of Burgers' equation . . . . . . . . . . 1125--1144
Zoltán Varga and
Eörs Szathmáry An extremum principle for parabolic
competition . . . . . . . . . . . . . . 1145--1154
Zuzana Knudsen and
A. V. Holden and
J. Brindley Qualitative modeling of
mechanoelectrical feedback in a
ventricular cell . . . . . . . . . . . . 1155--1181
Nicholas A. M. Monk Cell communities and robustness in
development . . . . . . . . . . . . . . 1183--1189
James Sneyd and
Mark A. J. Chaplain and
Edward F. Connor and
Stephen Cantrell Book reviews . . . . . . . . . . . . . . 1191--1201
M. R. Myerscough and
P. K. Maini and
K. J. Painter Pattern formation in a generalized
chemotactic model . . . . . . . . . . . 1--26
Sergio A. Alvarez and
Svetlana Levitan and
James A. Reggia Metrics for cortical map organization
and lateralization . . . . . . . . . . . 27--47
Asep K. Supriatna and
Hugh P. Possingham Optimal harvesting for a predator--prey
metapopulation . . . . . . . . . . . . . 49--65
Corinne Cerf A note on the tangle model for DNA
recombination . . . . . . . . . . . . . 67--78
K. Louie and
A. J. Hall and
P. W. Gandar A continuum mechanics approach to
determining the cellular velocity field
within a wool follicle . . . . . . . . . 79--100
John C. Dallon and
Jonathan A. Sherratt A mathematical model for fibroblast and
collagen orientation . . . . . . . . . . 101--129
Hugo Antonius van den Berg Modelling the metabolic versatility of a
microbial trichome . . . . . . . . . . . 131--150
Q. Zheng A stochastic two-phase growth model . . 151--161
Didier G. Arqués and
Jean-Paul Fallot and
Christian J. Michel An evolutionary analytical model of a
complementary circular code simulating
the protein coding genes, the 5' and 3'
regions . . . . . . . . . . . . . . . . 163--194
Kenneth Lange Book review . . . . . . . . . . . . . . 195--196
Jürgen Sühnel Parallel dose-response curves in
combination experiments . . . . . . . . 197--213
Jonathan Swinton Extinction times and phase transitions
for spatially structured closed
epidemics . . . . . . . . . . . . . . . 215--230
B. W. Kooi and
M. P. Boer and
S. A. L. M. Kooijman On the use of the logistic equation in
models of food chains . . . . . . . . . 231--246
R. F. Costantino and
J. M. Cushing and
Brian Dennis and
Robert A. Desharnais and
Shandelle M. Henson Resonant population cycles in temporally
fluctuating habitats . . . . . . . . . . 247--273
Athan Spiros and
Leah Edelstein-Keshet Testing a model for the dynamics of
actin structures with biological
parameter values . . . . . . . . . . . . 275--305
James Watmough and
Mark Winston and
Keith Slessor Distinguishing the effects of dilution
and restricted movement on the
intra-nest transmission of honey-bee
queen pheromones . . . . . . . . . . . . 307--327
J. Ackermann and
B. Wlotzka and
J. S. McCaskill In vitro DNA-based predator-prey system
with oscillatory kinetics . . . . . . . 329--354
Hyun Mo Yang and
Ana Silvia Barreiros Silveira The loss of immunity in directly
transmitted infections modeling: Effects
on the epidemiological parameters . . . 355--372
F. Ventriglia Computational experiments support a
competitive function in the the CA3
region of the hippocampus . . . . . . . 373--407
Ralph M. Siegel and
Edward Beltrami and
Ross Cressman Book reviews . . . . . . . . . . . . . . 409--415
Maja Bra\vci\vc and
Aneta Stefanovska Nonlinear dynamics of the blood flow
studied by Lyapunov exponents . . . . . 417--433
Yuzo Hosono The minimal speed of traveling fronts
for a diffusive Lotka--Volterra
competition model . . . . . . . . . . . 435--448
Leah Edelstein-Keshet and
G. Bard Ermentrout Models for the length distributions of
actin filaments: I. Simple
polymerization and fragmentation . . . . 449--475
G. Bard Ermentrout and
Leah Edelstein-Keshet Models for the length distributions of
actin filaments: II. Polymerization and
fragmentation by gelsolin acting
together . . . . . . . . . . . . . . . . 477--503
Amadeus Stephani and
Reinhart Heinrich Kinetic and thermodynamic principles
determining the structural design of
ATP-producing systems . . . . . . . . . 505--543
Denis Bugnon and
Gilles Potel and
Jocelyne Caillon and
Denis Baron and
Henri B. Drugeon and
Philippe Feigel and
Marie F. Kergueris In vivo simulation of human
pharmacokinetics in the rabbit . . . . . 545--567
S. V. Krishna and
P. D. N. Srinivasu and
B. Kaymakcalan Conservation of an ecosystem through
optimal taxation . . . . . . . . . . . . 569--584
Aline De Koeijer and
Odo Diekmann and
Peter Reijnders Modelling the spread of phocine
distemper virus among harbour seals . . 585--596
E. David Ford and
Gary Benson and
Elizabeth Thompson and
F. James Rohlf and
Brian D. Sleemank Eric Renshaw and
Brian A. Maurer Book reviews . . . . . . . . . . . . . . 597--613
Timothy P. Harrigan Limiting models for calcification in
fibrous tissues adjacent to orthopedic
implants: Variational indicator
functions and influences of implant
stiffness . . . . . . . . . . . . . . . 615--646
Derek J. Smith and
Stephanie Forrest and
David H. Ackley and
Alan S. Perelson Using lazy evaluation to simulate
realistic-size repertoires in models of
the immune system . . . . . . . . . . . 647--658
Chikara Furusawa and
Kunihiko Kaneko Emergence of rules in cell society:
Differentiation, hierarchy, and
stability . . . . . . . . . . . . . . . 659--687
I. Martinez de la Fuente and
L. Martinez and
N. Benitez and
J. Veguillas and
J. M. Aguirregabiria Persistent behavior in a phase-shift
sequence of periodical biochemical
oscillations . . . . . . . . . . . . . . 689--702
Alessandra Gragnani and
Oscar De Feo and
Sergio Rinaldi Food chains in the chemostat:
Relationships between mean yield and
complex dynamics . . . . . . . . . . . . 703--719
Vlastimil K\vrivan and
Giovanni Colombo A non-stochastic approach for modeling
uncertainty in population dynamics . . . 721--751
Eric Bonabeau and
Guy Theraulaz and
Jean-Louis Deneubourg Fixed response thresholds and the
regulation of division of labor in
insect societies . . . . . . . . . . . . 753--807
James A. Drake and
Ernesto Pérez-Chavela Book reviews . . . . . . . . . . . . . . 809--814
Jay E. Mittenthal and
Ao Yuan and
Bertrand Clarke and
Alexander Scheeline Designing metabolism: Alternative
connectivities for the pentose phosphate
pathway . . . . . . . . . . . . . . . . 815--856
A. R. A. Anderson and
M. A. J. Chaplain Continuous and discrete mathematical
models of tumor-induced angiogenesis . . 857--899
Nicholas A. M. Monk Restricted-range gradients and
travelling fronts in a model of
juxtacrine cell relay . . . . . . . . . 901--918
Maja Bra\vci\vc and
Aneta Stefanovska Wavelet-based analysis of human
blood-flow dynamics . . . . . . . . . . 919--935
Jonathan Pitchford and
John Brindley Intratrophic predation in simple
predator--prey models . . . . . . . . . 937--953
Frédéric Gosselin Reconciling theoretical approaches to
stochastic patch-occupancy
metapopulation models . . . . . . . . . 955--971
Daniel E. Bentil Distribution of attachment events
relative to actin binding sites as
evidenced in a bidirectional actomyosin
interaction model . . . . . . . . . . . 973--995
Gerardo Hernandez Book review . . . . . . . . . . . . . . 997--998
Fatihcan M. Atay and
John Mallet-Paret Modeling reflex asymmetries with
implicit delay differential equations 999--1015
G. Civeleko\uglu and
Y. Tardy and
J.-J. Meister Modeling actin filament reorganization
in endothelial cells subjected to cyclic
stretch . . . . . . . . . . . . . . . . 1017--1037
Richard H. Lathrop and
Robert G. Rogers, Jr. and
Temple F. Smith and
James V. White A Bayes-optimal sequence-structure
theory that unifies protein
sequence-structure recognition and
alignment . . . . . . . . . . . . . . . 1039--1071
Peter R. Wills and
Stuart A. Kauffman and
Barbel M. R. Stadler and
Peter F. Stadler Selection dynamics in autocatalytic
systems: Templates replicating through
binary ligation . . . . . . . . . . . . 1073--1098
Vladimir S. Troynikov Probability density functions useful for
parametrization of heterogeneity in
growth and allometry data . . . . . . . 1099--1122
Boris Shulgin and
Lewi Stone and
Zvia Agur Pulse vaccination strategy in the SIR
epidemic model . . . . . . . . . . . . . 1123--1148
J. Ch. Poggiale and
J. Michalski and
R. Arditi Emergence of donor control in patchy
predator --- prey systems . . . . . . . 1149--1166
Gerda De Vries and
Arthur Sherman and
Hsiu-Rong Zhu Diffusively coupled bursters: Effects of
cell heterogeneity . . . . . . . . . . . 1167--1200
Luis E. Eguiarte Book review . . . . . . . . . . . . . . 1201--1205
M. R. Bennett and
L. Farnell and
W. G. Gibson Cable analysis of a motor-nerve terminal
branch in a volume conductor . . . . . . 1--17
Christian Jost and
Ovide Arino and
Roger Arditi About deterministic extinction in
ratio-dependent predator--prey models 19--32
Rainer Malaka Models of classical conditioning . . . . 33--83
Mats Gyllenberg and
Timo Koski and
Tatu Lund and
Helge G. Gyllenberg Bayesian predictive identification and
cumulative classification of bacteria 85--111
Matthew R. Myers and
C. David Lytle and
Licia B. Routson A mathematical model for simulating
virus transport through synthetic
barriers . . . . . . . . . . . . . . . . 113--140
Liebe F. Cavalieri and
Huseyin Kocak Comparative dynamics of three models for
host-parasitoid interactions in a patchy
environment . . . . . . . . . . . . . . 141--155
Roderick Edwards and
Anne Beuter and
Leon Glass Parkinsonian tremor and simplification
in network dynamics . . . . . . . . . . 157--177
Asim Sikder Effects of parasitism over two competing
host populations leading to persistence 179--205
Fred Adler Book review . . . . . . . . . . . . . . 207--208
Philip W. Kuchel and
Edward D. Fackerell Parametric-equation representation of
biconcave erythrocytes . . . . . . . . . 209--220
Osnat Eytan and
David Elad Analysis of intra-uterine fluid motion
induced by uterine contractions . . . . 221--238
Ulrich Franke and
Kolumban Hutter and
Klaus Jöhnk A physical-biological coupled model for
algal dynamics in lakes . . . . . . . . 239--272
G. C. Chopra and
B. D. Sleeman and
J. Brindley and
D. G. Knapp and
A. V. Holden Velocity and stability of solitary
planar travelling wave solutions of
intracellular [Ca]$^{2+}$ . . . . . . . 273--301
Andrew M. Edwards and
John Brindley Zooplankton mortality and the dynamical
behaviour of plankton population models 303--339
Carlos M. Hernández-Suárez and
Pablo A. Marquet and
Jorge X. Velasco-Hernández Threshold parameters and metapopulation
persistence . . . . . . . . . . . . . . 341--353
Vladimir S. Troynikov Use of Bayes theorem to correct
size-specific sampling bias in growth
data . . . . . . . . . . . . . . . . . . 355--363
Gejza Wimmer and
Ladislav Dedík and
Marek Michal and
Andrea Mudríková and
Mária \vDuri\vsová Numerical simulations of stochastic
circulatory models . . . . . . . . . . . 365--377
Hisham A. El-Masri and
Christopher J. Portier Replication potential of cells via the
protein kinase C-MAPK pathway:
Application of a mathematical model . . 379--398
Timothy H. Keitt and
Bruce J. West Book reviews . . . . . . . . . . . . . . 399--401
Michael A. Fishman and
Alan S. Perelson Th1/Th2 differentiation and
cross-regulation . . . . . . . . . . . . 403--436
Christian Haslinger and
Peter F. Stadler RNA structures with pseudo-knots:
Graph-theoretical, combinatorial, and
statistical properties . . . . . . . . . 437--467
N. F. Britton and
L. W. Partridge and
N. R. Franks A model of survival times for predator
populations: The case of the army ants 469--482
R. A. Barrio and
C. Varea and
J. L. Aragón and
P. K. Maini A two-dimensional numerical study of
spatial pattern formation in interacting
Turing systems . . . . . . . . . . . . . 483--505
Gérald Houart and
Genevi\`eve Dupont and
Albert Goldbeter Bursting, chaos and birhythmicity
originating from self-modulation of the
inositol 1,4,5-trisphosphate signal in a
model for intracellular Ca$^{2+}$
oscillations . . . . . . . . . . . . . . 507--530
Kalle Parvinen Evolution of migration in a
metapopulation . . . . . . . . . . . . . 531--550
Girma J. Orssengo and
David C. Pye Determination of the true intraocular
pressure and modulus of elasticity of
the human cornea in vivo . . . . . . . . 551--572
I. M. De la Fuente and
N. Benitez and
A. Santamaria and
J. M. Aguirregabiria and
J. Veguillas Persistence in metabolic nets . . . . . 573--595
Benjamin Bolker and
Octavio Miramontes Book reviews . . . . . . . . . . . . . . 597--600
K. E. Thompson and
H. M. Byrne Modelling the internalization of
labelled cells in tumour spheroids . . . 601--623
Hal Caswell and
Ron Etter Cellular automaton models for
competition in patchy environments:
Facilitation, inhibition, and tolerance 625--649
Peter A. Spiro and
Hans G. Othmer The effect of
heterogeneously-distributed RyR channels
on calcium dynamics in cardiac myocytes 651--681
James Lawry A hydrostatic Michell framework supports
frog lungs . . . . . . . . . . . . . . . 683--700
K. Yusim and
H. Parnas and
L. Segel Theory of fast neurotransmitter release
control based on voltage-dependent
interaction between autoreceptors and
proteins of the exocytotic machinery . . 701--725
Eric Bonabeau and
Guy Theraulaz and
Jean-Louis Deneubourg Dominance orders in animal societies:
The self-organization hypothesis
revisited . . . . . . . . . . . . . . . 727--757
Kevin E. Thompson and
Janice A. Royds Hypoxia and reoxygenation: a pressure
for mutant p53 cell selection and tumour
progression . . . . . . . . . . . . . . 759--778
Benito M. Chen and
Hristo V. Kojouharov Non-standard numerical methods applied
to subsurface biobarrier formation
models in porous media . . . . . . . . . 779--798
Horst R. Thieme and
Luis Aguirre and
Lourdes Esteva-Peralta Book reviews . . . . . . . . . . . . . . 799--805
Toshio Sekimura and
Mei Zhu and
Julian Cook and
Philip K. Maini and
James D. Murray Pattern formation of scale cells in
lepidoptera by differential
origin-dependent cell adhesion . . . . . 807--828
Stefano Focardi and
Maurizio Rizzotto Optimal strategies and complexity: a
theoretical analysis of the
anti-predatory behavior of the hare . . 829--848
Benjamin M. Bolker Analytic models for the patchy spread of
plant disease . . . . . . . . . . . . . 849--874
David N. Levine The pathogenesis of normal pressure
hydrocephalus: a theoretical analysis 875--916
Mandri N. Obeyesekere and
Stuart O. Zimmerman and
Edwin S. Tecarro and
Giles Auchmuty A model of cell cycle behavior dominated
by kinetics of a pathway stimulated by
growth factors . . . . . . . . . . . . . 917--934
Nikolaos I. Stilianakis and
Johannes Seydel Modeling the T-cell dynamics and
pathogenesis of HTLV-I infection . . . . 935--947
Masayuki Yokozawa Size hierarchy and stability in
competitive plant populations . . . . . 949--961
E. Buchman and
H. Parnas A theoretical experimental method to
determine the locus of desensitization 963--986
Kumar Rajan and
Narsingh Deo Computational experience with a parallel
algorithm for tetrangle inequality bound
smoothing . . . . . . . . . . . . . . . 987--1008
Pedro Miramontes and
Jose Crossa Book reviews . . . . . . . . . . . . . . 1009--1013
Vladimir S. Troynikov Probability density functions useful for
parametrization of heterogeneity in
growth and allometry data . . . . . . . 1015--1016
Gerda De Vries and
Arthur Sherman and
Hsiu-Rong Zhu Diffusively coupled bursters: Effects of
cell heterogeneity . . . . . . . . . . . 1017--1017
Henry Hägerstrand and
Veronika Kralj-Igli\vc and
Ma\lgorzata Bobrowska-Hägerstrand and
Ale\vs Igli\vc Membrane skeleton detachment in
spherical and cylindrical
microexovesicles . . . . . . . . . . . . 1019--1030
Matthew C. Schuette and
Herbert W. Hethcote Modeling the effects of varicella
vaccination programs on the incidence of
chickenpox and shingles . . . . . . . . 1031--1064
Alan M. Weinstein Modeling epithelial cell homeostasis:
Steady-state analysis . . . . . . . . . 1065--1091
Edmund J. Crampin and
Eamonn A. Gaffney and
Philip K. Maini Reaction and diffusion on growing
domains: Scenarios for robust pattern
formation . . . . . . . . . . . . . . . 1093--1120
Shandelle M. Henson and
R. F. Costantino and
J. M. Cushing and
Brian Dennis and
Robert A. Desharnais Multiple attractors, saddles, and
population dynamics in periodic habitats 1121--1149
Michael Mesterton-Gibbons On the evolution of pure winner and
loser effects: a game-theoretic model 1151--1186
Ricard V. Solé and
Javier G. P. Gamarra and
Marta Ginovart and
Daniel López Controlling chaos in ecology: From
deterministic to individual-based models 1187--1207
Roger M. Nisbet Book review . . . . . . . . . . . . . . 1209--1210
Yehuda Katz and
Itzhak Aharon Four applications of the anesthetic
cut-off effect . . . . . . . . . . . . . 1--16
Micha Peleg and
Joseph Horowitz On estimating the probability of
aperiodic outbursts of microbial
populations from their fluctuating
counts . . . . . . . . . . . . . . . . . 17--35
Andrea Ciliberto and
John J. Tyson Mathematical model for early development
of the sea urchin embryo . . . . . . . . 37--59
William S. C. Gurney and
A. Roy Veitch Self-organization, scale and stability
in a spatial predator-prey interaction 61--86
J. Mosquera and
M. Gómez-Gesteira and
V. Pérez-Villar Using parasites as biological tags of
fish populations: a dynamical model . . 87--99
M. Pernarowski Fast subsystem bifurcations in strongly
coupled heterogeneous collections of
excitable cells . . . . . . . . . . . . 101--120
Mihaela Oprea and
Erik Van Nimwegen and
Alan S. Perelson Dynamics of one-pass germinal center
models: Implications for affinity
maturation . . . . . . . . . . . . . . . 121--153
S. R.-J. Jang and
Arun K. Mitra Equilibrium stability of single-species
metapopulations . . . . . . . . . . . . 155--161
Martin H. Kroll Parathyroid hormone temporal effects on
bone formation and resorption . . . . . 163--188
Fred Brauer and
Graeme Ruxton and
Stephen J. Merrill and
Jonathan Heller and
Daniel E. Bentil Book reviews . . . . . . . . . . . . . . 189--197
Garry L. Block and
Linda J. S. Allen Population extinction and
quasi-stationary behavior in stochastic
density-dependent structured models . . 199--228
Claire D. Sherman and
Christopher J. Portier Calculation of the cumulative
distribution function of the time to a
small observable tumor . . . . . . . . . 229--240
Amnon Horovitz and
Ofer Yifrach On the relationship between the Hill
coefficients for steady-state and
transient kinetic data: a criterion for
concerted transitions in allosteric
proteins . . . . . . . . . . . . . . . . 241--246
Paul Smolen and
Douglas A. Baxter and
John H. Byrne Modeling transcriptional control in gene
networks --- methods, recent results,
and future directions . . . . . . . . . 247--292
H. J. Wearing and
M. R. Owen and
J. A. Sherratt Mathematical modelling of juxtacrine
patterning . . . . . . . . . . . . . . . 293--320
S. Schnell and
C. Mendoza Time-dependent closed form solutions for
fully competitive enzyme reactions . . . 321--336
Jacques A. L. Silva and
Manuela L. De Castro and
Dagoberto A. R. Justo Synchronism in a metapopulation model 337--349
Emily Silverman and
Mark Kot Rate estimation for a simple movement
model . . . . . . . . . . . . . . . . . 351--375
J. E. Truscott and
C. A. Gilligan and
C. R. Webb Quantitative analysis and model
simplification of an epidemic model with
primary and secondary infection . . . . 377--393
Sarah Holte and
Christpher M. Kribs-Zaleta Book reviews . . . . . . . . . . . . . . 395--398
Peter F. Stadler and
Rudi Seitz and
Günter P. Wagner Population dependent Fourier
decomposition of fitness landscapes over
recombination spaces: Evolvability of
complex characters . . . . . . . . . . . 399--428
S. Ghorai and
N. A. Hill Wavelengths of gyrotactic plumes in
bioconvection . . . . . . . . . . . . . 429--450
M. Broom and
C. Cannings and
G. T. Vickers Evolution in knockout conflicts: The
fixed strategy case . . . . . . . . . . 451--466
Jianfeng Feng and
David Brown Integrate-and-fire models with nonlinear
leakage . . . . . . . . . . . . . . . . 467--481
S. Schnell and
P. K. Maini Enzyme kinetics at high enzyme
concentration . . . . . . . . . . . . . 483--499
K. J. Painter and
P. K. Maini and
H. G. Othmer A chemotactic model for the advance and
retreat of the primitive streak in avian
development . . . . . . . . . . . . . . 501--525
Evans K. Afenya and
Calixto P. Calderón Diverse ideas on the growth kinetics of
disseminated cancer cells . . . . . . . 527--542
P. De Muynck and
J. Cornelis and
L. I. Titomir Multipole approach to the inverse
problem in electrocardiology:
Convergence of the multipole equivalent
generator on the inhomogeneous body
conductor . . . . . . . . . . . . . . . 543--583
David Greenhalgh Book review . . . . . . . . . . . . . . 585--588
Joaquín Delgado Fernandez Book review . . . . . . . . . . . . . . 588--590
Steven H. Strogatz Book review . . . . . . . . . . . . . . 591--593
Amar Gandhi and
Simon Levin and
Steven Orszag Moment expansions in spatial ecological
models and moment closure through
Gaussian approximation . . . . . . . . . 595--632
A. C. Fowler The effect of incubation time
distribution on the extinction
characteristics of a rabies epizootic 633--656
J. M. Devaud and
B. Quenet and
J. Gascuel and
C. Masson Statistical analysis and parsimonious
modelling of dendrograms of in vitro
neurones . . . . . . . . . . . . . . . . 657--674
Brian K. Davis Darwinian aspects of molecular evolution
at sublinear propagation rates . . . . . 675--694
Paul R. Shorten and
David J. N. Wall A Hodgkin--Huxley model exhibiting
bursting oscillations . . . . . . . . . 695--715
K. Yusim and
H. Parnas and
L. A. Segel Theory for the feedback inhibition of
fast release of neurotransmitter . . . . 717--757
Ludo Pagie and
Paulien Hogeweg Individual-and population-based
diversity in restriction-modification
systems . . . . . . . . . . . . . . . . 759--774
R. N. Bearon and
T. J. Pedley Modelling run-and-tumble chemotaxis in a
shear flow . . . . . . . . . . . . . . . 775--791
Thomas Caraco and
Stephan Glavanakov Book review: \booktitleSampling and
Statistical Methods for Behavioral
Ecologists, by J. Bart, M. A. Fligner
and W. I. Notz, Cambridge University
Press, New York, 1998. \$29.95
(paperback), 330 pp. ISBN 0-521-45705-X} 793--794
E. J. Muñoz-Martínez Book review: \booktitleSmall Worlds: The
Dynamics of Networks Between Order and
Randomness, by Duncan J. Watts,
(Princeton Studies in Complexity),
Princeton University Press, 1999.
\$39.50 (hardcover), 262 pp. ISBN
0-691-00541-9} . . . . . . . . . . . . . 795--797
Israel A. Wagner Book review: \booktitleInformation
Processing in Social Insects, by C.
Detrain, J. L. Deneubourg and Jacques M.
Pasteels (Editors), Birkhäuser, 1999.
\$130.00, 415 pp. ISBN 0-817-65792-4} 799--801
Erik van Nimwegen and
James P. Crutchfield Metastable evolutionary dynamics:
Crossing fitness barriers or escaping
via neutral paths? . . . . . . . . . . . 799--848
Lud\vek Berec Mixed encounters, limited perception and
optimal foraging . . . . . . . . . . . . 849--868
Sergei S. Pilyugin and
Rustom Antia Modeling immune responses with handling
time . . . . . . . . . . . . . . . . . . 869--890
David M. Broday Diffusion of clusters of transmembrane
proteins as a model of focal adhesion
remodeling . . . . . . . . . . . . . . . 891--924
S. L. Ipiña and
A. I. Durand A measure of sexual dimorphism in
populations which are univariate normal
mixtures . . . . . . . . . . . . . . . . 925--941
Rampal S. Etienne Local populations of different sizes,
mechanistic rescue effect and patch
preference in the Levins metapopulation
model . . . . . . . . . . . . . . . . . 943--958
Robin E. Snyder and
Roger M. Nisbet Spatial structure and fluctuations in
the contact process and related models 959--975
James A. Powell and
Janette L. Jenkins and
Jesse A. Logan and
Barbara J. Bentz Seasonal temperature alone can
synchronize life cycles . . . . . . . . 977--998
Gerardo Hernández Book review . . . . . . . . . . . . . . 999--1000
Brian K. Davis Erratum: Darwinian aspects of molecular
evolution at sublinear propagation rates 1001--1001
D. R. Clother and
J. Brindley Stochastic development of individual
members of a population: a Brownian
motion approach . . . . . . . . . . . . 1003--1034
Stefan Mayer Numerical simulation of flow fields and
particle trajectories in ciliary
suspension feeding . . . . . . . . . . . 1035--1059
Bärbel M. R. Stadler and
Peter F. Stadler and
Peter Schuster Dynamics of autocatalytic replicator
networks based on higher-order ligation
reactions . . . . . . . . . . . . . . . 1061--1086
George K. Hung and
Kenneth J. Ciuffreda A unifying theory of refractive error
development . . . . . . . . . . . . . . 1087--1108
Lars Witting Population cycles caused by selection by
density dependent competitive
interactions . . . . . . . . . . . . . . 1109--1136
Irakli Loladze and
Yang Kuang and
James J. Elser Stoichiometry in producer--grazer
systems: Linking energy flow with
element cycling . . . . . . . . . . . . 1137--1162
Erik B. Muller and
Roger M. Nisbet Survival and production in variable
resource environments . . . . . . . . . 1163--1189
Steven M. Baer and
Warren J. Ewens and
C. M. Hernandez-Suarez Book reviews . . . . . . . . . . . . . . 1191--1194
S. Coombes The effect of ion pumps on the speed of
travelling waves in the
fire-diffuse-fire model of Ca$^{2+}$
release . . . . . . . . . . . . . . . . 1--20
Oliver Ebenhöh and
Reinhart Heinrich Evolutionary optimization of metabolic
pathways. Theoretical reconstruction of
the stoichiometry of ATP and NADH
producing systems . . . . . . . . . . . 21--55
Christian Reidys and
Christian V. Forst and
Peter Schuster Replication and mutation on neutral
networks . . . . . . . . . . . . . . . . 57--94
Jack D. Dockery and
James P. Keener A mathematical model for quorum sensing
in \bionamePseudomonas aeruginosa . . . 95--116
H. Dopazo and
M. B. Gordon and
R. Perazzo and
S. Risau-Gusman A model for the interaction of learning
and evolution . . . . . . . . . . . . . 117--134
D. Gammack and
H. M. Byrne and
C. E. Lewis Estimating the selective advantage of
mutant p53 tumour cells to repeated
rounds of hypoxia . . . . . . . . . . . 135--166
M. Pernarowski Controllability of excitable systems . . 167--184
Spyros Papageorgiou A physical force may expose Hox genes to
express in a morphogenetic density
gradient . . . . . . . . . . . . . . . . 185--200
Kirk A. Moloney and
Lourdes Esteva-Peralta and
Craig Henriquez Book reviews . . . . . . . . . . . . . . 201--205
Rui Dilão and
Tiago Domingos Periodic and quasi-periodic behavior in
resource-dependent age structured
population models . . . . . . . . . . . 207--230
G. J. Pettet and
C. P. Please and
M. J. Tindall and
D. L. S. McElwain The migration of cells in multicell
tumor spheroids . . . . . . . . . . . . 231--257
J. Grasman and
F. van den Bosch and
O. A. van Herwaarden Mathematical conservation ecology: a
one-predator-two-prey system as case
study . . . . . . . . . . . . . . . . . 259--269
B. W. Kooi and
P. P. F. Hanegraaf Bi-trophic food chain dynamics with
multiple component populations . . . . . 271--299
David A. Edwards The effect of a receptor layer on the
measurement of rate constants . . . . . 301--327
Donald A. Drew A mathematical model for prokaryotic
protein synthesis . . . . . . . . . . . 329--351
Beatriz Fuentes-Pardo and
Miguel Lara-Aparicio and
Santiago López de Medrano On the ontogeny of the motor circadian
rhythm in crayfish . . . . . . . . . . . 353--369
Gerda de Vries and
Arthur Sherman From spikers to bursters via coupling:
Help from heterogeneity . . . . . . . . 371--391
Frank P. Kozusko Body weight setpoint, metabolic adaption
and human starvation . . . . . . . . . . 393--403
Claudia Bergmann and
J. Leo van Hemmen and
Lee A. Segel Th1 or Th2: How an appropriate T helper
response can be made . . . . . . . . . . 405--430
C. A. Heckman and
C. S. Runyeon and
J. G. Wade and
S. Seubert Mathematical modeling of marker influx
and efflux in cells . . . . . . . . . . 431--449
Natalia L. Komarova and
Martin A. Nowak The evolutionary dynamics of the lexical
matrix . . . . . . . . . . . . . . . . . 451--484
Jacques A. L. Silva and
Manuela L. De Castro and
Dagoberto A. R. Justo Stability in a metapopulation model with
density-dependent dispersal . . . . . . 485--505
Luis García-Barrios and
David Mayer-Foulkes and
Miguel Franco and
Guillermo Urquijo-Vásquez and
Juan Franco-Pérez Development and validation of a
spatially explicit individual-based
mixed crop growth model . . . . . . . . 507--526
Jonathan William Pitchford and
John Brindley Prey patchiness, predator survival and
fish recruitment . . . . . . . . . . . . 527--546
Diego J. Rodríguez and
Lourdes Torres-Sorando Models of infectious diseases in
spatially heterogeneous environments . . 547--571
Janette L. Jenkins and
James A. Powell and
Jesse A. Logan and
Barbara J. Bentz Low seasonal temperatures promote life
cycle synchronization . . . . . . . . . 573--595
Philip Gerrish and
Hong Qian Book reviews . . . . . . . . . . . . . . 597--601
J. A. N. Filipe and
G. J. Gibson Comparing approximations to
spatio-temporal models for epidemics
with local spread . . . . . . . . . . . 603--624
James P. Keener Diffusion induced oscillatory insulin
secretion . . . . . . . . . . . . . . . 625--641
Fumio Oosawa Spontaneous signal generation in living
cells . . . . . . . . . . . . . . . . . 643--654
M. R. Owen and
M. A. Lewis How predation can slow, stop or reverse
a prey invasion . . . . . . . . . . . . 655--684
C. Utzny and
N. J. Burroughs Stability of a diverse immunological
memory is determined by T cell
population dynamics . . . . . . . . . . 685--713
Claus O. Wilke Adaptive evolution on neutral networks 715--730
Joseph T. Wu and
Helen M. Byrne and
David H. Kirn and
Lawrence M. Wein Modeling and analysis of a virus that
replicates selectively in tumor cells 731--768
B. W. Kooi and
T. G. Hallam and
F. D. L. Kelpin and
C. M. Krohn and
S. A. L. M. Kooijman Iteroparous reproduction strategies and
population dynamics . . . . . . . . . . 769--794
Donald L. DeAngelis and
Germinal Cocho Book reviews . . . . . . . . . . . . . . 795--799
Howard A. Levine and
Serdal Pamuk and
Brian D. Sleeman and
Marit Nilsen-Hamilton Mathematical modeling of capillary
formation and development in tumor
angiogenesis: Penetration into the
stroma . . . . . . . . . . . . . . . . . 801--863
H. Schöllnberger and
B. R. Scott and
T. E. Hanson Application of Bayesian inference to
characterize risks associated with low
doses of low-LET radiation . . . . . . . 865--883
Petr Lánský and
Wayne M. Getz Receptor heterogeneity and its effect on
sensitivity and coding range in
olfactory sensory neurons . . . . . . . 885--908
Steven J. Cox and
Lin Ji Discerning ionic currents and their
kinetics from input impedance data . . . 909--932
Yi Fang and
Susan R. Wilson On cloning and clone libraries for
finite and infinite length genomes . . . 933--950
D. J. T. Sumpter and
G. B. Blanchard and
D. S. Broomhead Ants and agents: a process algebra
approach to modelling ant colony
behaviour . . . . . . . . . . . . . . . 951--980
Mats Gyllenberg and
Kalle Parvinen Necessary and sufficient conditions for
evolutionary suicide . . . . . . . . . . 981--993
Stan Pounds Estimating the fraction of clonable
genomic DNA . . . . . . . . . . . . . . 995--1002
Frank Kozusko Book review . . . . . . . . . . . . . . 1003--1003
Robert Engel and
Mark Normand and
Joseph Horowitz and
Micha Peleg A model of microbial contamination of a
water reservoir . . . . . . . . . . . . 1005--1023
K. Yusim and
H. Parnas and
L. A. Segel One-vesicle hypothesis for
neurotransmitter release: a possible
molecular mechanism . . . . . . . . . . 1025--1040
F. A. B. Coutinho and
L. F. Lopez and
M. N. Burattini and
E. Massad Modelling the natural history of HIV
infection in individuals and its
epidemiological implications . . . . . . 1041--1062
Liran Carmel and
David Harel and
Doron Lancet Estimating the size of the olfactory
repertoire . . . . . . . . . . . . . . . 1063--1078
Guy Theraulaz and
Eric Bonabeau and
Christian Sauwens and
Jean-Louis Deneubourg and
Arnaud Lioni and
François Libert and
Luc Passera and
Ricard Solé Model of droplet dynamics in the
Argentine ant \bionameLinepithema humile
(Mayr) . . . . . . . . . . . . . . . . . 1079--1093
Ute Ebert and
Manuel Arrayás and
Nico Temme and
Ben Sommeijer and
Jef Huisman Critical conditions for phytoplankton
blooms . . . . . . . . . . . . . . . . . 1095--1124
Wendy A. M. Brandts and
André Longtin and
Lynn E. H. Trainor Two-category model of task allocation
with application to ant societies . . . 1125--1161
Joseph S. Oliveira and
Colin G. Bailey and
Janet B. Jones-Oliveira and
David A. Dixon An algebraic-combinatorial model for the
identification and mapping of
biochemical pathways . . . . . . . . . . 1163--1196
Eberhard O. Voit Book review . . . . . . . . . . . . . . 1197--1198
Ana Barahona Book review . . . . . . . . . . . . . . 1199--1200
Philip K. Maini Editorial . . . . . . . . . . . . . . . 1--1
T. Aittokallio and
M. Gyllenberg and
O. Polo Adjustment of the human respiratory
system to increased upper airway
resistance during sleep . . . . . . . . 3--28
Duncan S. Callaway and
Alan S. Perelson HIV-1 infection and low steady state
viral loads . . . . . . . . . . . . . . 29--64
C. A. Cobbold and
J. A. Sherratt and
S. R. J. Maxwell Lipoprotein oxidation and its
significance for atherosclerosis: a
mathematical approach . . . . . . . . . 65--95
R. A. Albanese and
H. T. Banks and
M. V. Evans and
L. K. Potter Physiologically based pharmacokinetic
models for the transport of
trichloroethylene in adipose tissue . . 97--131
Zvi Kam Generalized analysis of experimental
data for interrelated biological
measurements . . . . . . . . . . . . . . 133--145
Mojdeh Mohtashemi and
Richard Levins Qualitative analysis of the all-cause
black-white mortality crossover . . . . 147--173
J. L. W. Gielen and
S. Kranenbarg Oxygen balance for small organisms: an
analytical model . . . . . . . . . . . . 175--207
Ricard V. Sole and
Javier G. P. Gamarra Book review . . . . . . . . . . . . . . 209--212
Ivan V. Maly Diffusion approximation of the
stochastic process of microtubule
assembly . . . . . . . . . . . . . . . . 213--238
A. J. Koerber and
J. R. King and
J. P. Ward and
P. Williams and
J. M. Croft and
R. E. Sockett A mathematical model of
partial-thickness burn-wound infection
by Pseudomonas aeruginosa: Quorum
sensing and the build-up to invasion . . 239--259
Brian K. Briscoe and
Mark A. Lewis and
Stephen E. Parrish Home range formation in wolves due to
scent marking . . . . . . . . . . . . . 261--284
Madjid Khosroyani and
George K. Hung A dual-mode dynamic model of the human
accommodation system . . . . . . . . . . 285--299
Alberto Marín-Sanguino and
Néstor V. Torres Modelling, steady state analysis and
optimization of the catalytic efficiency
of the triosephosphate isomerase . . . . 301--326
Athanasius F. M. Marée and
Paulien Hogeweg Modelling \bionameDictyostelium
discoideum morphogenesis: The
culmination . . . . . . . . . . . . . . 327--353
Alessandro Bertuzzi and
Mario Faretta and
Alberto Gandolfi and
Carmela Sinisgalli and
Giuseppe Starace and
Giorgio Valoti and
Paolo Ubezio Kinetic heterogeneity of an experimental
tumour revealed by BrdUrd incorporation
and mathematical modelling . . . . . . . 355--384
Ruy M. Ribeiro and
Hiroshi Mohri and
David D. Ho and
Alan S. Perelson Modeling deuterated glucose labeling of
T-lymphocytes . . . . . . . . . . . . . 385--405
Yuki Kagawa and
Yoshimi Tsuchiya Stochasticity of the step size in the
force generating process due to a single
myosin molecule . . . . . . . . . . . . 407--419
Renee Fister Book review . . . . . . . . . . . . . . 421--422
H. A. Levine and
S. Pamuk and
B. D. Sleeman and
M. Nilsen-Hamilton Mathematical modeling of capillary
formation and development in tumor
angiogenesis: Penetration into the
stroma . . . . . . . . . . . . . . . . . 423--423
Claudia Bergmann and
J. Leo van Hemmen and
Lee A. Segel How instruction and feedback can select
the appropriate T helper response . . . 425--446
R. Kuske and
S. M. Baer Asymptotic analysis of noise sensitivity
in a neuronal burster . . . . . . . . . 447--481
Patrick Lafrance and
Vincent Lemaire and
France Varin and
François Donati and
Jacques Bélair and
Fahima Nekka Spatial effects in modeling
pharmacokinetics of rapid action drugs 483--500
Anotida Madzvamuse and
Roger D. K. Thomas and
Philip K. Maini and
Andrew J. Wathen A numerical approach to the study of
spatial pattern formation in the
ligaments of arcoid bivalves . . . . . . 501--530
David M. Broday Motion of nanobeads proximate to plasma
membranes during single particle
tracking . . . . . . . . . . . . . . . . 531--563
M. A. Bees and
P. Andresén and
E. Mosekilde and
M. Givskov Quantitative effects of medium hardness
and nutrient availability on the
swarming motility of \bionameSerratia
liquefaciens . . . . . . . . . . . . . . 565--587
Ken Biegeleisen Topologically non-linked circular duplex
DNA . . . . . . . . . . . . . . . . . . 589--609
Javier G. P. Gamarra and
Ricard V. Solé Complex discrete dynamics from simple
continuous population models . . . . . . 611--620
Jorge Soberón Book review . . . . . . . . . . . . . . 621--622
Jonathan A. Sherratt and
Richard Weller and
Nicholas J. Savill Modelling blood flow regulation by
nitric oxide in psoriatic plaques . . . 623--641
Tomoyoshi Yoshigaki The cleavage plane will bend when one
aster of the mitotic apparatus stops
growing in compressed sea urchin eggs 643--672
S. R. McDougall and
A. R. A. Anderson and
M. A. J. Chaplain and
J. A. Sherratt Mathematical modelling of flow through
vascular networks: Implications for
tumour-induced angiogenesis and
chemotherapy strategies . . . . . . . . 673--702
Max Shpak and
Kevin Atteson A survey of unequal crossover systems
and their mathematical properties . . . 703--746
E. J. Crampin and
W. W. Hackborn and
P. K. Maini Pattern formation in reaction--diffusion
models with nonuniform domain growth . . 747--769
István Miklós An improved algorithm for statistical
alignment of sequences related by a star
tree . . . . . . . . . . . . . . . . . . 771--779
H. A. van den Berg and
N. J. Burroughs and
D. A. Rand Quantifying the strength of ligand
antagonism in TCR triggering . . . . . . 781--808
Michael A. Fishman and
Lewi Stone Fertility assurance through extrapair
fertilization, and male parental effort 809--823
Javier A. Simonetti Book review . . . . . . . . . . . . . . 825--826
J. M. Cushing Book review . . . . . . . . . . . . . . 827--828
Carlo R. Laing and
André Longtin A two-variable model of
somatic-dendritic interactions in a
bursting neuron . . . . . . . . . . . . 829--860
Eliezer Shochat and
Salomon M. Stemmer and
Lee Segel Human haematopoiesis in steady state and
following intense perturbations . . . . 861--886
William S. Hlavacek and
Antonio Redondo and
Carla Wofsy and
Byron Goldstein Kinetic proofreading in
receptor-mediated transduction of
cellular signals: Receptor aggregation,
partially activated receptors, and
cytosolic messengers . . . . . . . . . . 887--911
David Alonso and
Alan McKane Extinction dynamics in mainland--island
metapopulations: an $N$-patch stochastic
model . . . . . . . . . . . . . . . . . 913--958
Mats Gyllenberg and
Diana Preoteasa and
Kari Saikkonen Vertically transmitted symbionts in
structured host metapopulations . . . . 959--978
Brenda Farrell and
Steven J. Cox Estimating the time course of pore
expansion during the spike phase of
exocytotic release in mast cells of the
beige mouse . . . . . . . . . . . . . . 979--1010
David L. Craft and
Lawrence M. Wein and
Dennis J. Selkoe A mathematical model of the impact of
novel treatments on the $ A \beta $
burden in the Alzheimer's brain, CSF and
plasma . . . . . . . . . . . . . . . . . 1011--1031
Martin Nilsson and
Nigel Snoad Optimal mutation rates in dynamic
environments . . . . . . . . . . . . . . 1033--1043
Robert Planqué and
Nicholas F. Britton and
Nigel R. Franks and
Mark A. Peletier The adaptiveness of defence strategies
against cuckoo parasitism . . . . . . . 1045--1068
Ichiji Tasaki and
Gen Matsumoto On the cable theory of nerve conduction 1069--1082
Peter Jòrgensen and
Carsten Schäfer and
Peter G. Guerra and
Mario Talajic and
Stanley Nattel and
Leon Glass A mathematical model of human
atrioventricular nodal function
incorporating concealed conduction . . . 1083--1099
Karen M. Page and
Martin A. Nowak Empathy leads to fairness . . . . . . . 1101--1116
Jonathan Burns and
Geoff Clarke and
Charles J. Lumsden Photoreceptor death: Spatiotemporal
patterns arising from one-hit death
kinetics and a diffusible cell death
factor . . . . . . . . . . . . . . . . . 1117--1145
Philip Gerrish Book review . . . . . . . . . . . . . . 1147--1147
M. Shpak and
K. Atteson A survey of unequal crossover systems
and their mathematical properties . . . 1149--1149
Lisa Sattenspiel and
D. Ann Herring Simulating the effect of quarantine on
the spread of the 1918--19 flu in
Central Canada . . . . . . . . . . . . . 1--26
H. Dopazo and
M. B. Gordon and
R. Perazzo and
S. Risau-Gusman A model for the emergence of adaptive
subsystems . . . . . . . . . . . . . . . 27--56
Harald Jockusch and
Andreas Dress From sphere to torus: a topological view
of the metazoan body plan . . . . . . . 57--65
W. Garrett Mitchener and
Martin A. Nowak Competitive exclusion and coexistence of
universal grammars . . . . . . . . . . . 67--93
J. Krishnan and
P. A. Iglesias Analysis of the signal transduction
properties of a module of spatial
sensing in eukaryotic chemotaxis . . . . 95--128
Gordon A. Fox and
Alan Hastings Limiting relationships between selection
and recombination . . . . . . . . . . . 129--141
Yunxin Huang and
Odo Diekmann Interspecific influence on mobility and
Turing instability . . . . . . . . . . . 143--156
Leona Harris Clark and
Paul M. Schlosser and
James F. Selgrade Multiple stable periodic solutions in a
model for hormonal control of the
menstrual cycle . . . . . . . . . . . . 157--173
Julio A. Hernández Stability properties of elementary
dynamic models of membrane transport . . 175--197
Mali Salmon-Divon and
Petter Höglund and
Ramit Mehr Generation of the natural killer cell
repertoire: The sequential vs. the
two-step selection model . . . . . . . . 199--218
Micha Peleg and
Mark D. Normand and
Osvaldo H. Campanella Estimating microbial inactivation
parameters from survival curves obtained
under varying conditions --- The linear
case . . . . . . . . . . . . . . . . . . 219--234
K. A. Landman and
G. J. Pettet and
D. F. Newgreen Mathematical models of cell colonization
of uniformly growing domains . . . . . . 235--262
Jerome K. Percus and
Ora E. Percus and
Martin Markowitz and
David D. Ho and
Michele Di Mascio and
Alan S. Perelson The distribution of viral blips observed
in HIV-1 infected patients treated with
combination antiretroviral therapy . . . 263--277
M. J. García-Meseguer and
J. A. Vidal de Labra and
M. García-Moreno and
F. García-Cánovas and
B. H. Havsteen and
R. Varón Mean residence times in linear
compartmental systems. Symbolic formulae
for their direct evaluation . . . . . . 279--308
Michael G. Sadovsky The method to compare nucleotide
sequences based on the minimum entropy
principle . . . . . . . . . . . . . . . 309--322
Oliver Ebenhöh and
Reinhart Heinrich Stoichiometric design of metabolic
networks: Multifunctionality, clusters,
optimization, weak and strong robustness 323--357
Can Ke\csmir and
Rob J. De Boer Clonal exhaustion as a result of immune
deviation . . . . . . . . . . . . . . . 359--374
Yoram Louzoun and
Sorin Solomon and
Henri Atlan and
Irun R. Cohen Proliferation and competition in
discrete biological systems . . . . . . 375--396
A. D. Barbour and
Roman Kälin The duration of a sequence of epidemics 397--405
Ayla Ergun and
Kevin Camphausen and
Lawrence M. Wein Optimal scheduling of radiotherapy and
angiogenic inhibitors . . . . . . . . . 407--424
Sergei Petrovskii and
Bai-Lian Li and
Horst Malchow Quantification of the spatial aspect of
chaotic dynamics in biological and
chemical systems . . . . . . . . . . . . 425--446
Graeme P. Boswell and
Helen Jacobs and
Fordyce A. Davidson and
Geoffrey M. Gadd and
Karl Ritz Growth and function of fungal mycelia in
heterogeneous environments . . . . . . . 447--477
Sanyi Tang and
Lansun Chen Multiple attractors in stage-structured
population models with birth pulses . . 479--495
Yang Kuang and
William F. Fagan and
Irakli Loladze Biodiversity, habitat area, resource
growth rate and interference competition 497--518
G. Abramson and
V. M. Kenkre and
T. L. Yates and
R. R. Parmenter Traveling waves of infection in the
hantavirus epidemics . . . . . . . . . . 519--534
Yoram Louzoun and
Martin Weigert and
Gyan Bhanot Dynamical analysis of a degenerate
primary and secondary humoral immune
response . . . . . . . . . . . . . . . . 535--545
Abba Gumel and
Lloyd Demetrius Book reviews: \booktitleMathematical
Approaches for Emerging and Re-emerging
Infectious Diseases: an Introduction by
Carlos Castillo Chavez, Sally Blower,
Pauline van der Driessche, Denise
Kirshner and Abdul Aziz Yakubu, 2002.
IMA Volumes in Mathematics and its
Applications 125, Springer-Verlag.
\$79.95, ISBN 0-387-95354-X} . . . . . . 547--552
Hui-Chih Hung and
Yu-Hou Chen and
Guang-Yaw Liu and
Hwei-Jen Lee and
Gu-Gang Chang Equilibrium protein folding-unfolding
process involving multiple intermediates 553--570
Wayne Nagata and
Lionel G. Harrison and
Stephan Wehner Reaction--diffusion models of growing
plant tips: Bifurcations on hemispheres 571--607
Christopher J. W. Breward and
Helen M. Byrne and
Claire E. Lewis A multiphase model describing vascular
tumour growth . . . . . . . . . . . . . 609--640
Stefan Reinker and
Ernest Puil and
Robert M. Miura Resonances and noise in a stochastic
Hindmarsh--Rose model of thalamic
neurons . . . . . . . . . . . . . . . . 641--663
M. Marcano-Velázquez and
Harold E. Layton An inverse algorithm for a mathematical
model of an avian urine concentrating
mechanism . . . . . . . . . . . . . . . 665--691
Magdalena Luca and
Alexandra Chavez-Ross and
Leah Edelstein-Keshet and
Alex Mogilner Chemotactic signaling, microglia, and
Alzheimer's disease senile plaques: Is
there a connection? . . . . . . . . . . 693--730
S. J. Till and
J. Till and
P. K. Milsom and
G. Rowlands A new model for laser-induced thermal
damage in the retina . . . . . . . . . . 731--746
Andreas Fahlman and
Susan R. Kayar Probabilistic modelling for estimating
gas kinetics and decompression sickness
risk in pigs during H$_2$ biochemical
decompression . . . . . . . . . . . . . 747--766
Colleen C. Mitchell and
David G. Schaeffer A two-current model for the dynamics of
cardiac membrane . . . . . . . . . . . . 767--793
S. C. Nicolis and
C. Detrain and
D. Demolin and
J. L. Deneubourg Optimality of collective choices: a
stochastic approach . . . . . . . . . . 795--808
Konstadia Lika and
Sebastiaan A. L. M. Kooijman Life history implications of allocation
to growth versus reproduction in dynamic
energy budgets . . . . . . . . . . . . . 809--834
M. J. Beynon and
K. L. Buchanan An illustration of variable precision
rough set theory: The gender
classification of the European barn
swallow (\bionameHirundo rustica) . . . 835--858
Anita T. Layton and
Harold E. Layton A region-based model framework for the
rat urine concentrating mechanism . . . 859--901
Alessandro Bertuzzi and
Alberto D'Onofrio and
Antonio Fasano and
Alberto Gandolfi Regression and regrowth of tumour cords
following single-dose anticancer
treatment . . . . . . . . . . . . . . . 903--931
C. Y. Chen and
Y. Cordeaux and
S. J. Hill and
J. R. King Modelling of signalling via G-protein
coupled receptors: Pathway-dependent
agonist potency and efficacy . . . . . . 933--958
Miguel Lara-Aparicio Book review: \booktitleThe geometry of
biological time by Arthur Winfree,
Springer-Verlag, New York, 2nd edition,
\$89.95 (hardcover), 800 pp. ISBN
0-387-98992-7, 2001} . . . . . . . . . . 959--960
Ulrich H. E. Hansmann Book review: \booktitleProtein physics
--- a course of lectures by Alexei V.
Finkelstein and Oleg B. Ptitsyn, 2002.
Academic Press. \$80.00US, 354 pp., ISBN
0-12-256781-1} . . . . . . . . . . . . . 961--962
Simeone Marino and
Suman Ganguli and
Ian M. P. Joseph and
Denise E. Kirschner The importance of an inter-compartmental
delay in a model for human gastric acid
secretion . . . . . . . . . . . . . . . 963--990
Humberto González Díaz and
Ronal Ramos De Armas and
Reinaldo Molina Vibrational Markovian modelling of
footprints after the interaction of
antibiotics with the packaging region of
HIV type 1 . . . . . . . . . . . . . . . 991--1002
Daniel Coombs and
Michael A. Gilchrist and
Jerome Percus and
Alan S. Perelson Optimal viral production . . . . . . . . 1003--1023
Vincent Devloo and
Pierre Hansen and
Martine Labbé Identification of all steady states in
large networks by logical analysis . . . 1025--1051
D. L. Chopp and
M. J. Kirisits and
B. Moran and
M. R. Parsek The dependence of quorum sensing on the
depth of a growing biofilm . . . . . . . 1053--1079
Noël Bonneuil Making ecosystem models viable . . . . . 1081--1094
Andrew Heyd and
Donald A. Drew A mathematical model for elongation of a
peptide chain . . . . . . . . . . . . . 1095--1109
A. R. Tzafriri Michaelis--Menten kinetics at high
enzyme concentrations . . . . . . . . . 1111--1129
Malka Gorfine and
Laurence Freedman and
Gitit Shahaf and
Ramit Mehr Maximum likelihood estimator and
likelihood ratio test in complex models:
an application to B lymphocyte
development . . . . . . . . . . . . . . 1131--1139
Nicolas P. Smith From sarcomere to cell: an efficient
algorithm for linking mathematical
models of muscle contraction . . . . . . 1141--1162
John Morgan and
Ken Steiglitz Pairwise competition and the replicator
equation . . . . . . . . . . . . . . . . 1163--1172
Marcus Rowcliffe Book review: \booktitleEstimating animal
abundance --- closed populations by D.
L. Borchers, W. Zucchini and S. T.
Buckland, 2002. Springer-Verlag.
\$69.95, 314 pp., 91 illus. Hardcover,
ISBN 1-85233-560-2} . . . . . . . . . . 1173--1174
Alf H. Òien Daphnicle dynamics based on kinetic
theory: an analogue-modelling of
swarming and behaviour of
\bionameDaphnia . . . . . . . . . . . . 1--46
Michael A. Fishman and
Lewi Stone Indiscriminate polyandry and male
parental effort . . . . . . . . . . . . 47--63
Greg Lemon Fire-diffuse-fire calcium waves in
confined intracellular spaces . . . . . 65--90
I. Gudelj and
K. A. J. White and
N. F. Britton The effects of spatial movement and
group interactions on disease dynamics
of social animals . . . . . . . . . . . 91--108
Q. J. A. Khan and
E. Balakrishnan and
G. C. Wake Analysis of a predator-prey system with
predator switching . . . . . . . . . . . 109--123
Michael Meyer-Hermann and
Tilo Beyer The type of seeder cells determines the
efficiency of germinal center reactions 125--141
Ying-Hen Hsieh and
Chien Hsun Chen Modelling the social dynamics of a sex
industry: Its implications for spread of
HIV/AIDS . . . . . . . . . . . . . . . . 143--166
Maria E. Gracheva and
Hans G. Othmer A continuum model of motility in ameboid
cells . . . . . . . . . . . . . . . . . 167--193
Alberto de la Fuente and
Pedro Mendes Book review: \booktitleComputational
analysis of biochemical systems, by
Eberhart O. Voit, November 2000.
Paperback (hardback), 544 pages,
\$140.00, ISBN 0-521-78579-0} . . . . . 195--197
Katarzyna A. Rejniak and
Harvey J. Kliman and
Lisa J. Fauci A computational model of the mechanics
of growth of the villous trophoblast
bilayer . . . . . . . . . . . . . . . . 199--232
V. N. Biktashev and
J. Brindley Phytoplankton blooms and fish
recruitment rate: Effects of spatial
distribution . . . . . . . . . . . . . . 233--259
Hidde de Jong and
Johannes Geiselmann and
Grégory Batt and
Céline Hernandez and
Michel Page Qualitative simulation of the initiation
of sporulation in \bionameBacillus
subtilis . . . . . . . . . . . . . . . . 261--299
Hidde de Jong and
Jean-Luc Gouzé and
Céline Hernandez and
Michel Page and
Tewfik Sari and
Johannes Geiselmann Qualitative simulation of genetic
regulatory networks using
piecewise-linear models . . . . . . . . 301--340
David H. Brown and
Benjamin M. Bolker The effects of disease dispersal and
host clustering on the epidemic
threshold in plants . . . . . . . . . . 341--371
J. A. N. Filipe and
W. Otten and
G. J. Gibson and
C. A. Gilligan Inferring the dynamics of a spatial
epidemic from time-series data . . . . . 373--391
Santiago Schnell Book review: \booktitleParametric
sensitivity in chemical systems by
Arvind Varma, Massimo Morbidelli and Hua
Wu, 1999. Cambridge series in chemical
engineering, Cambridge University Press.
\pounds 60.00/\$90.00, ISBN
0-521-62171-2} . . . . . . . . . . . . . 393--395
Tini Garske and
Uwe Grimm A maximum principle for the
mutation-selection equilibrium of
nucleotide sequences . . . . . . . . . . 397--421
Kuan-Chou Chen and
Chiung-Huei Peng and
Hui-Er Wang and
Chiung-Chi Peng and
Robert Y. Peng Modeling of the pH- and the
temperature-dependant deviations of the
free to total PSA (Prostate Specific
Antigen) ratios for clinical
predictability of prostate cancer and
benign prostate hyperplasia . . . . . . 423--445
Yun Wang Entity grammar systems: a grammatical
tool for studying the hierarchal
structures of biological systems . . . . 447--471
Paulo R. A. Campos Fixation of beneficial mutations in the
presence of epistatic interactions . . . 473--486
Yunxin Huang and
Odo Diekmann and
Frank Van Den Bosch Double-jump migration and diffusive
instability . . . . . . . . . . . . . . 487--504
Santiago L. Ipiña and
Ana I. Durand Inferential assessment of the MI index
of sexual dimorphism: a comparative
study with some other sexual dimorphism
measures . . . . . . . . . . . . . . . . 505--522
D. P. Wilson and
S. Mathews and
C. Wan and
A. N. Pettitt and
D. L. S. McElwain Use of a quantitative gene expression
assay based on micro-array techniques
and a mathematical model for the
investigation of chlamydial generation
time . . . . . . . . . . . . . . . . . . 523--537
Isabel S. Labouriau and
Carla Alves-Pinto Loss of synchronization in partially
coupled Hodgkin--Huxley equations . . . 539--557
R. E. Svetic and
C. R. MacCluer and
C. O. Buckley and
K. L. Smythe and
J. H. Jackson A metabolic force for gene clustering 559--581
Christopher J. Dugaw and
Alan Hastings and
Evan L. Preisser and
Donald R. Strong Seasonally limited host supply generates
microparasite population cycles . . . . 583--594
Philip K. Maini and
Santiago Schnell and
Sara Jolliffe Bulletin of mathematical biology ---
facts, figures and comparisons . . . . . 595--603
Joseph T. Wu and
David H. Kirn and
Lawrence M. Wein Analysis of a three-way race between
tumor growth, a replication-competent
virus and an immune response . . . . . . 605--625
Takashi Miura and
Philip K. Maini Speed of pattern appearance in
reaction--diffusion models: Implications
in the pattern formation of limb bud
mesenchyme cells . . . . . . . . . . . . 627--649
Karen M. Page Language learning: How much evidence
does a child need in order to learn to
speak grammatically? . . . . . . . . . . 651--662
John D. Nagy Competition and natural selection in a
mathematical model of cancer . . . . . . 663--687
Renée X. de Menezes and
Neli R. S. Ortega and
Eduardo Massad A Reed--Frost model taking into account
uncertainties in the diagnostic of the
infection . . . . . . . . . . . . . . . 689--706
J. David Logan and
Anthony Joern and
William Wolesensky Control of CNP homeostasis in herbivore
consumers through differential
assimilation . . . . . . . . . . . . . . 707--725
Yuishi Iwasaki and
Sohei Gomi Stochastic formulation for a partial
neural circuit of \bionameC. elegans . . 727--743
D. W. Verzi Modeling activity-dependent synapse
restructuring . . . . . . . . . . . . . 745--762
Jacques M. Bahi and
Christian J. Michel A stochastic gene evolution model with
time dependent mutations . . . . . . . . 763--778
Hiroyasu Yamada and
Reiko Tanaka and
Toshiyuki Nakagaki Sequences of symmetry-breaking in
phyllotactic transitions . . . . . . . . 779--789
S. J. Till and
P. K. Milsom and
G. Rowlands A simplified physical model of pressure
wave dynamics and acoustic wave
generation induced by laser absorption
in the retina . . . . . . . . . . . . . 791--808
I. Klapper Effect of heterogeneous structure in
mechanically unstressed biofilms on
overall growth . . . . . . . . . . . . . 809--824
Richard J. Hall and
Simon Gubbins and
Christopher A. Gilligan Invasion of drug and pesticide
resistance is determined by a trade-off
between treatment efficacy and relative
fitness . . . . . . . . . . . . . . . . 825--840
Nadarajah Kirupaharan and
Linda J. S. Allen Coexistence of multiple pathogen strains
in stochastic epidemic models with
density-dependent mortality . . . . . . 841--864
Amit Huppert and
Ronen Olinky and
Lewi Stone Bottom-up excitable models of
phytoplankton blooms . . . . . . . . . . 865--878
Andrei Korobeinikov Global properties of basic virus
dynamics models . . . . . . . . . . . . 879--883
Alberto Capurro and
C. P. Malta Noise autocorrelation and jamming
avoidance performance in pulse type
electric fish . . . . . . . . . . . . . 885--905
Maykel Pérez González and
Maria del Carmen Terán Moldes QSAR study of $ N^6
$-(substituted-phenylcarbamoyl)
adenosine-5'-uronamides as agonist for $
A_1 $ adenosine receptors . . . . . . . 907--920
Hector Puebla Book review: \booktitlePathway analysis
and optimization in metabolic
engineering by N. V. Torres and E. O.
Voit, 2002, Cambridge University Press,
Cambridge, UK, \$95.00 (hardback), ISBN
0-521-80038-2} . . . . . . . . . . . . . 921--923
Markus E. Nebel Investigation of the Bernoulli model for
RNA secondary structures . . . . . . . . 925--964
Matthew He Genetic code, attributive mappings and
stochastic matrices . . . . . . . . . . 965--973
A. B. Potapov and
M. A. Lewis Climate and competition: The effect of
moving range boundaries on habitat
invasibility . . . . . . . . . . . . . . 975--1008
D. M. Bortz and
P. W. Nelson Sensitivity analysis of a nonlinear
lumped parameter model of HIV infection
dynamics . . . . . . . . . . . . . . . . 1009--1026
J. A. N. Filipe and
M. M. Maule and
C. A. Gilligan On `Analytical models for the patchy
spread of plant disease' . . . . . . . . 1027--1037
R. P. Araujo and
D. L. S. McElwain A history of the study of solid tumour
growth: The contribution of mathematical
modelling . . . . . . . . . . . . . . . 1039--1091
Seema H. Bajaria and
Glenn Webb and
Denise E. Kirschner Predicting differential responses to
structured treatment interruptions
during HAART . . . . . . . . . . . . . . 1093--1118
A. Stéphanou and
M. A. J. Chaplain and
P. Tracqui A mathematical model for the dynamics of
large membrane deformations of isolated
fibroblasts . . . . . . . . . . . . . . 1119--1154
Jens Meier and
Martin Kleen and
Konrad Messmer A computer model of fractal myocardial
perfusion heterogeneity to elucidate
mechanisms of changes in critical
coronary stenosis and hypotension . . . 1155--1171
Rafael A. Rosales MCMC for hidden Markov models
incorporating aggregation of states and
filtering . . . . . . . . . . . . . . . 1173--1199
Alan M. Weinstein Modeling epithelial cell homeostasis:
Assessing recovery and control
mechanisms . . . . . . . . . . . . . . . 1201--1240
Chi Ming Yang On the $ 28$-gon symmetry inherent in
the genetic code intertwined with
aminoacyl-tRNA synthetases --- The Lucas
series . . . . . . . . . . . . . . . . . 1241--1257
R. J. Smith and
L. M. Wahl Distinct effects of protease and reverse
transcriptase inhibition in an
immunological model of HIV-1 infection
with impulsive drug effects . . . . . . 1259--1283
Humberto González Díaz and
Iyusmila Bastida and
Nilo Castañedo and
Oslay Nasco and
Ervelio Olazabal and
Alcidez Morales and
Hector S. Serrano and
Ronal Ramos De Armas Simple stochastic fingerprints towards
mathematical modelling in biology and
medicine. 1. The treatment of
coccidiosis . . . . . . . . . . . . . . 1285--1311
Richard Bertram and
Arthur Sherman A calcium-based phantom bursting model
for pancreatic islets . . . . . . . . . 1313--1344
Hugo Antonius van den Berg and
Yuri Nikolaevich Kiselëv Expansion and contraction of the
cytotoxic T lymphocyte response --- An
optimal control approach . . . . . . . . 1345--1369
Takuyo Aita and
Shunichi Morinaga and
Yuzuru Husimi Thermodynamical interpretation of
evolutionary dynamics on a fitness
landscape in a evolution reactor, I . . 1371--1403
Matthew X. He and
Sergei V. Petoukhov and
Paolo E. Ricci Genetic code, Hamming distance and
stochastic matrices . . . . . . . . . . 1405--1421
Jian-Jun Shu and
Li Shan Ouw Pairwise alignment of the DNA sequence
using hypercomplex number representation 1423--1438
Rudolf Gesztelyi and
Judit Zsuga and
Béla Juhász and
Péter Dér and
Miklós Vecsernyés and
A. József Szentmiklósi Concentration estimation via curve
fitting: Quantification of negative
inotropic agents by using a simple
mathematical method in guinea pig atria 1439--1453
Harald Jockusch and
Andreas Dress Letter to the Editor . . . . . . . . . . 1455--1455
Francisco Solís Book review: \booktitleEssential
Mathematical Biology by Nicholas Ferris
Britton, Springer Verlag, 370 pages,
\$34.95, ISBN 1-85233-536-X} . . . . . . 1457--1458
Paula Federico and
Suzanne Lenhart Book review: \booktitleThe mathematics
of marriage: dynamic linear models by
John M. Gottman, James D. Murray,
Catherine C. Swanson, Rebecca Tyson, and
Kristin R. Swanson, 2002. Bradford Book,
Massachusetts Institute of Technology
Press, pp. 403, \$42.95, ISBN
0-262-07226-2} . . . . . . . . . . . . . 1459--1461
E. Bruce Pitman and
Roman M. Zaritski and
Kevin J. Kesseler and
Leon C. Moore and
Harold E. Layton Feedback-mediated dynamics in two
coupled nephrons . . . . . . . . . . . . 1463--1492
Christina Warrender and
Stephanie Forrest and
Lee Segel Homeostasis of peripheral immune
effectors . . . . . . . . . . . . . . . 1493--1514
G. Carrero and
E. Crawford and
M. J. Hendzel and
G. de Vries Characterizing fluorescence recovery
curves for nuclear proteins undergoing
binding events . . . . . . . . . . . . . 1515--1545
Laura E. Jones and
Stephen P. Ellner Evolutionary tradeoff and equilibrium in
an aquatic predator-prey system . . . . 1547--1573
Brian Austin and
Peter Dawyndt and
Mats Gyllenberg and
Timo Koski and
Tatu Lund and
Jean Swings and
Fabiano L. Thompson Sliding window discretization: a new
method for multiple band matching of
bacterial genotyping fingerprints . . . 1575--1596
Rosana Motta Jafelice and
Laécio Carvalho de Barros and
Rodney Carlos Bassanezi and
Fernando Gomide Fuzzy modeling in symptomatic HIV virus
infected population . . . . . . . . . . 1597--1620
Christine Taylor and
Drew Fudenberg and
Akira Sasaki and
Martin A. Nowak Evolutionary game dynamics in finite
populations . . . . . . . . . . . . . . 1621--1644
Mark Broom and
Roger M. Luther and
Graeme D. Ruxton Resistance is useless? --- Extensions to
the game theory of kleptoparasitism . . 1645--1658
Mini Ghosh and
Andrea Pugliese Seasonal population dynamics of ticks,
and its influence on infection
transmission: a semi-discrete approach 1659--1684
Arild Wikan and
Arne Eide An analysis of a nonlinear
stage-structured cannibalism model with
application to the Northeast Arctic cod
stock . . . . . . . . . . . . . . . . . 1685--1704
J. R. Quine and
Timothy A. Cross and
Michael S. Chapman and
Richard Bertram Mathematical aspects of protein
structure determination with NMR
orientational restraints . . . . . . . . 1705--1730
William S. C. Gurney and
Roger M. Nisbet Resource allocation, hyperphagia and
compensatory growth . . . . . . . . . . 1731--1753
Stephen J. Willson Constructing rooted supertrees using
distances . . . . . . . . . . . . . . . 1755--1783
M. J. Plank and
B. D. Sleeman Lattice and non-lattice models of tumour
angiogenesis . . . . . . . . . . . . . . 1785--1819
Estella Gilbert and
James A. Powell and
Jesse A. Logan and
Barbara J. Bentz Comparison of three models predicting
developmental milestones given
environmental and individual variation 1821--1850
D. Ambrosi and
A. Gamba and
G. Serini Cell directional and chemotaxis in
vascular morphogenesis . . . . . . . . . 1851--1873
Gang Wang and
Jianli Yuan and
Xizhi Wang and
Sa Xiao and
Wenbing Huang Competitive regulation of plant
allometry and a generalized model for
the plant self-thinning process . . . . 1875--1885
R. Hinch Stability of cardiac waves . . . . . . . 1887--1908
R. M. Hillary and
M. A. Bees Synchrony & chaos in patchy ecosystems 1909--1931
K. Renee Fister Book review: Elizabeth S. Allman and
John A. Rhodes, \booktitleMathematical
Models in Biology, Cambridge University
Press, Cambridge, UK (2004). ISBN
0-521-81980-6 (hardback) or
0-521-52586-1 (paperback) \$40.00
(paperback)} . . . . . . . . . . . . . . 1933--1934
Robersy Sánchez and
Eberto Morgado and
Ricardo Grau A genetic code Boolean structure. I. The
meaning of Boolean deductions . . . . . 1--14
Barak Yaish and
Ramit Mehr Models for the dynamics and order of
immunoglobulin isotype switching . . . . 15--32
Belinda Barnes and
Harvinder Sidhu Plant-herbivore models, where more grass
means fewer grazers . . . . . . . . . . 33--55
S. A. L. M. Kooijman and
L. A. Segel How growth affects the fate of cellular
metabolites . . . . . . . . . . . . . . 57--77
B. Ribba and
K. Marron and
Z. Agur and
T. Alarcón and
P. K. Maini A mathematical model of Doxorubicin
treatment efficacy for non-Hodgkin's
lymphoma: Investigation of the current
protocol through theoretical modelling
results . . . . . . . . . . . . . . . . 79--99
Horacio Gómez-Acevedo and
Michael Y. Li Backward bifurcation in a model for
HTLV-I infection of CD4$^+$ T cells . . 101--114
Sanyi Tang and
Yanni Xiao and
Lansun Chen and
Robert A. Cheke Integrated pest management models and
their dynamical behaviour . . . . . . . 115--135
Heather Flores and
Edgar Lobaton and
Stefan Méndez-Diez and
Svetlana Tlupova and
Ricardo Cortez A study of bacterial flagellar bundling 137--168
Maik Kschischo and
Michael Lässig and
Yi-Kuo Yuc Toward an accurate statistics of gapped
alignments . . . . . . . . . . . . . . . 169--191
Gerardo Hernández Book review: Michael Bulmer,
\booktitleFrancis Galton: Pioneer of
Heredity and Biometry, Johns Hopkins
University Press (2003), ISBN
0-8018-7403-3, 352 pages, \$45.00} . . . 193--194
D. Ambrosi and
A. Gamba and
G. Serini Cell directional persistence and
chemotaxis in vascular morphogenesis . . 195--195
Anonymous Obituary . . . . . . . . . . . . . . . . iii--iii
Kai Hu Writhe of DNA induced by a terminal
twist . . . . . . . . . . . . . . . . . 197--209
X. Zheng and
S. M. Wise and
V. Cristini Nonlinear simulation of tumor necrosis,
neo-vascularization and tissue invasion
via an adaptive finite-element/level-set
method . . . . . . . . . . . . . . . . . 211--259
Stephen J. Willson Minimum evolution using ordinary
least-squares is less robust than
neighbor-joining . . . . . . . . . . . . 261--279
Diomar Cristina Mistro and
Luiz Alberto Díaz Rodrigues and
Wilson Castro Ferreira, Jr. The Africanized honey bee dispersal: a
mathematical zoom . . . . . . . . . . . 281--312
Shuyu Sun and
Mary F. Wheeler and
Mandri Obeyesekere and
C. Patrick, Jr. A deterministic model of growth
factor-induced angiogenesis . . . . . . 313--337
Ruiqi Wang and
Zhujun Jing and
Luonan Chen Modelling periodic oscillation in gene
regulatory networks by cyclic feedback
systems . . . . . . . . . . . . . . . . 339--367
P. J. Woodroffe and
J. R. King and
C. L. Varley and
J. Southgate Modelling cell signalling and
differentiation in the urothelium . . . 369--389
Faustino Sánchez-Garduño Book review: J. D. Murray,
\booktitleMathematical biology, Springer
Verlag (2003). ISBN 0-387-95228-4, 736
pages \$79.95} . . . . . . . . . . . . . 391--392
Vien Nguyen and
Roy Mathias and
Gregory D. Smith A stochastic automata network descriptor
for Markov chain models of
instantaneously coupled intracellular
Ca$^{2+}$ channels . . . . . . . . . . . 393--432
José Díaz and
Gustavo Martínez-Mekler Interaction of the IP$_3$-Ca$^{2+}$ and
MAPK signaling systems in the
\bionameXenopus blastomere: A possible
frequency encoding mechanism for the
control of the Xbra gene expression . . 433--465
T. Awerbuch-Friedlander and
R. Levins and
M. Predescu The role of seasonality in the dynamics
of deer tick populations . . . . . . . . 467--486
Khalid Boushaba and
Mercedes Pascual Dynamics of the `echo' effect in a
phytoplankton system with nitrogen
fixation . . . . . . . . . . . . . . . . 487--507
Lucy Tiemi Takahashi and
Norberto Anibal Maidana and
Wilson Castro Ferreira, Jr. and
Petronio Pulino and
Hyun Mo Yang Mathematical models for the
\bionameAedes aegypti dispersal
dynamics: Travelling waves by wing and
wind . . . . . . . . . . . . . . . . . . 509--528
D. C. Bardos Probabilistic Gompertz model of
irreversible growth . . . . . . . . . . 529--545
Susanne Ditlevsen and
Andrea de Gaetano Stochastic vs. deterministic uptake of
dodecanedioic acid by isolated rat
livers . . . . . . . . . . . . . . . . . 547--561
E. A. Gaffney The mathematical modelling of adjuvant
chemotherapy scheduling: Incorporating
the effects of protocol rest phases and
pharmacokinetics . . . . . . . . . . . . 563--611
Takuyo Aita and
Shunichi Morinaga and
Yuzuru Husimi Thermodynamical interpretation of
evolutionary dynamics on a fitness
landscape in an evolution reactor, II 613--635
Sergei Petrovskii and
Andrew Morozov and
Bai-Lian Li Regimes of biological invasion in a
predator-prey system with the Allee
effect . . . . . . . . . . . . . . . . . 637--661
Å. Brännström and
D. J. T. Sumpter Coupled map lattice approximations for
spatially explicit individual-based
models of ecology . . . . . . . . . . . 663--682
Joseph H. Tien and
William D. Hazelton and
Rachel Sparks and
Cornelia M. Ulrich A Michaelis--Menten-style model for the
autocatalytic enzyme prostaglandin H
synthase . . . . . . . . . . . . . . . . 683--700
Natalia L. Komarova and
Avy Soffera Nonlinear waves in double-stranded DNA 701--718
Eric Bax Checkpoint method for choice recovery in
dynamic programming . . . . . . . . . . 719--736
Giulia Menconi Sublinear growth of information in DNA
sequences . . . . . . . . . . . . . . . 737--759
María S. Sánchez and
Robert M. Grant and
Travis C. Porco and
Kimber L. Gross and
Wayne M. Getz A decrease in drug resistance levels of
the HIV epidemic can be bad news . . . . 761--782
R. J. Smith and
L. M. Wahl Drug resistance in an immunological
model of HIV-1 infection with impulsive
drug effects . . . . . . . . . . . . . . 783--813
Britta Basse and
Bruce C. Baguley and
Elaine S. Marshall and
Graeme C. Wake and
David J. N. Wall Modelling the flow of cytometric data
obtained from unperturbed human tumour
cell lines: Parameter fitting and
comparison . . . . . . . . . . . . . . . 815--830
N. G. Cogan and
Ricardo Cortez and
Lisa Fauci Modeling physiological resistance in
bacterial biofilms . . . . . . . . . . . 831--853
Isthrinayagy Krishnarajah and
Alex Cook and
Glenn Marion and
Gavin Gibson Novel moment closure approximations in
stochastic epidemics . . . . . . . . . . 855--873
Michael A. Fishman and
Lewi Stone Fertility assurance and breeding
synchrony . . . . . . . . . . . . . . . 875--883
Michele Di Mascio and
Jerome K. Percus and
Ora E. Percus and
Martin Markowitz and
David D. Ho and
Alan S. Perelson Duration of an intermittent episode of
viremia . . . . . . . . . . . . . . . . 885--900
Chetan Gadgil and
Chang Hyeong Lee and
Hans G. Othmer A stochastic analysis of first-order
reaction networks . . . . . . . . . . . 901--946
Robert Hinch A note on the asymptotic reduction of
the Hodgkin--Huxley equations for nerve
impulses . . . . . . . . . . . . . . . . 947--955
R. Quentin Grafton and
Tom Kompas and
David Lindenmayer Marine reserves with ecological
uncertainty . . . . . . . . . . . . . . 957--971
R. Twarock Mathematical models for tubular
structures in the family of
\bionamePapovaviridae . . . . . . . . . 973--987
J. R. Stirling and
M. S. Zakynthinaki and
B. Saltin A model of oxygen uptake kinetics in
response to exercise: Including a means
of calculating oxygen
demand/deficit/debt . . . . . . . . . . 989--1015
Robersy Sanchez and
Ricardo Grau A genetic code Boolean structure. II.
The genetic information system as a
Boolean information system . . . . . . . 1017--1029
István Miklós and
Irmtraud M. Meyer and
Borbála Nagy Moments of the Boltzmann distribution
for RNA secondary structures . . . . . . 1031--1047
J. A. Stewart-Cox and
N. F. Brittona and
M. Mogie Pollen limitation or mate search need
not induce an Allee effect . . . . . . . 1049--1079
Meng Fan and
Yang Kuang and
Zhilan Feng Cats protecting birds revisited . . . . 1081--1106
C. Bowman and
A. B. Gumel and
P. van den Driessche and
J. Wu and
H. Zhu A mathematical model for assessing
control strategies against West Nile
virus . . . . . . . . . . . . . . . . . 1107--1133
L. Giuggioli and
G. Abramson and
V. M. Kenkre and
G. Suzán and
E. Marcé and
T. L. Yates Diffusion and home range parameters from
rodent population measurements in Panama 1135--1149
Diomar Cristina Mistro and
Luiz Alberto Díaz Rodrigues and
Wilson Castro Ferreira, Jr. Erratum: The Africanized honey bee
dispersal: a mathematical zoom . . . . . 1151--1151
Britta Basse and
Bruce C. Baguley and
Elaine S. Marshall and
Graeme C. Wake and
David J. N. Wall Erratum: Modelling the flow cytometric
data obtained from unperturbed human
tumour cell lines: Parameter fitting and
comparison . . . . . . . . . . . . . . . 1153--1153
Kai Hu Erratum: Writhe of DNA induced by a
terminal twist . . . . . . . . . . . . . 1155--1155
Gustavo Cruz-Pacheco and
Lourdes Esteva and
Juan Antonio Montaõ-Hirose and
Cristobal Vargas Modelling the dynamics of West Nile
Virus . . . . . . . . . . . . . . . . . 1157--1172
Jerome K. Percus Small population effects in stochastic
population dynamics . . . . . . . . . . 1173--1194
Dominik Kami\'nski and
Jacek Miekisz and
Marcin Zaborowski Stochastic stability in three-player
games . . . . . . . . . . . . . . . . . 1195--1205
Dashun Xu and
Jason Curtis and
Zhilan Feng and
Dennis J. Minchella On the role of schistosome mating
structure in the maintenance of drug
resistant strains . . . . . . . . . . . 1207--1226
Laura E. Jonesa and
Alan S. Perelson Opportunistic infection as a cause of
transient viremia in chronically
infected HIV patients under treatment
with HAART . . . . . . . . . . . . . . . 1227--1251
Mich\`ele Koenigsberger and
Roger Sauser and
Jean-Jacques Meister Emergent properties of electrically
coupled smooth muscle cells . . . . . . 1253--1272
J. A. Stewart-Cox and
N. F. Britton and
M. Mogie Space mediates coexistence of females
and hermaphrodites . . . . . . . . . . . 1273--1302
Richard A. Reyment The statistical analysis of multivariate
serological frequency data . . . . . . . 1303--1313
Sonya J. Snedecor Dynamic treatment model to examine the
association between phenotypic drug
resistance and duration of HIV viral
suppression . . . . . . . . . . . . . . 1315--1332
Ji-Huan He The allometry of leaf form in early
plant ontogeny . . . . . . . . . . . . . 1333--1337
Hiroshi Yoshida and
Takashi Yokomori and
Akira Suyama A simple classification of the volvocine
algae by formal languages . . . . . . . 1339--1354
Hani Goodarzi and
Hamed Shateri Najafabadi and
Hamed Ahmadi Nejad and
Noorossadat Torabi The impact of including tRNA content on
the optimality of the genetic code . . . 1355--1368
Philip K. Maini Editorial . . . . . . . . . . . . . . . 1--1
Mark Lewis and
Joanna Renc\lawowicz and
P. van den Driessche Traveling Waves and Spread Rates for a
West Nile Virus Model . . . . . . . . . 3--23
Anna Q. Cai and
Kerry A. Landman and
Barry D. Hughes Modelling Directional Guidance and
Motility Regulation in Cell Migration 25--52
A. D. Fitt and
G. Gonzalez Fluid Mechanics of the Human Eye:
Aqueous Humour Flow in The Anterior
Chamber . . . . . . . . . . . . . . . . 53--71
Andrew M. Oster and
Paul C. Bressloff A Developmental Model of Ocular
Dominance Column Formation on a Growing
Cortex . . . . . . . . . . . . . . . . . 73--98
E. A. Gaffney and
N. A. M. Monk Gene Expression Time Delays and Turing
Pattern Formation Systems . . . . . . . 99--130
Paul J. Atzberger and
Charles S. Peskin A Brownian Dynamics Model of Kinesin in
Three Dimensions Incorporating the
Force--Extension Profile of the
Coiled--Coil Cargo Tether . . . . . . . 131--160
D. P. Wilson and
P. Timms and
D. L. S. Mcelwain and
P. M. Bavoil Type III Secretion, Contact-dependent
Model for the Intracellular Development
of \bionameChlamydia . . . . . . . . . . 161--178
Michael C. Wendl Occupancy Modeling of Coverage
Distribution for Whole Genome Shotgun
DNA Sequencing . . . . . . . . . . . . . 179--196
Helen V. Waugh and
Jonathan A. Sherratt Macrophage Dynamics in Diabetic Wound
Dealing . . . . . . . . . . . . . . . . 197--207
Dashun Xu and
Jason Curtis and
Zhilan Feng and
Dennis J. Minchella On the Role of Schistosome Mating
Structure in the Maintenance of
Drug-resistant Strains . . . . . . . . . 209--229
D. G. Mallet and
G. J. Pettet A Mathematical Model of
Integrin-mediated Haptotactic Cell
Migration . . . . . . . . . . . . . . . 231--253
Filippo Castiglione and
Benedetto Piccoli Optimal Control in a Model of Dendritic
Cell Transfection Cancer Immunotherapy 255--274
Larisa Vatov and
Ziv Kizner and
Eytan Ruppin and
Sigal Meilin and
Tamar Manor and
Avraham Mayevsky Modeling Brain Energy Metabolism and
Function: a Multiparametric Monitoring
Approach . . . . . . . . . . . . . . . . 275--291
B. Mukhopadhyay and
R. Bhattacharyya Modeling the Role of Diffusion
Coefficients on Turing Instability in a
Reaction--diffusion prey--predator
System . . . . . . . . . . . . . . . . . 293--313
T. Aittokallio and
M. Gyllenberg and
O. Polo and
J. Toivonen and
A. Virkki Model-Based Analysis of Mechanisms
Responsible for Sleep--Induced Carbon
Dioxide Differences . . . . . . . . . . 315--341
Moisés Santillán and
Eduardo S. Zeronb Analytical Study of the Multiplicity of
Regulatory Mechanisms in the Tryptophan
Operon . . . . . . . . . . . . . . . . . 343--359
Yun S. Song A Sufficient Condition for Reducing
Recursions in Hidden Markov Models . . . 361--384
A. V. Melkikh and
V. D. Seleznev Requirements on Models and Models of
Active Transport of Ions in Biomembranes 385--399
Timothy C. Reluga and
Jan Medlock and
Alison P. Galvani A Model of Spatial Epidemic Spread When
Individuals Move Within Overlapping Home
Ranges . . . . . . . . . . . . . . . . . 401--416
J. V. Ross Stochastic models for mainland-island
metapopulations in static and dynamic
landscapes . . . . . . . . . . . . . . . 417--449
Jacques A. L. Silva and
Flávia T. Giordani Density-dependent migration and
synchronism in metapopulations . . . . . 451--466
Shandelle M. Henson and
James L. Hayward and
Smruti P. Damania Identifying Environmental Determinants
of Diurnal Distribution in Marine Birds
and Mammals . . . . . . . . . . . . . . 467--482
Ichiji Tasaki A Note on the Local Current Associated
with the Rising Phase of a Propagating
Impulse in Nonmyelinated Nerve Fibers 483--490
Mark A. Lewis and
Joanna Renc\lawowicz and
P. van den Driessche and
Marjorie Wonham A Comparison of Continuous and
Discrete-time West Nile Virus Models . . 491--509
Linda J. S. Allen and
Robert K. McCormack and
Colleen B. Jonsson Mathematical Models for Hantavirus
Infection in Rodents . . . . . . . . . . 511--524
Nicolas Bacaër and
Xamxinur Abdurahman and
Jianli Ye Modeling the HIV/AIDS Epidemic Among
Injecting Drug Users and Sex Workers in
Kunming, China . . . . . . . . . . . . . 525--550
Ying-Hen Hsieh and
Yun-Shih Wang Basic Reproduction Number for HIV Model
Incorporating Commercial Sex and
Behavior Change . . . . . . . . . . . . 551--575
Elamin H. Elbasha and
Abba B. Gumel Theoretical Assessment of Public Health
Impact of Imperfect Prophylactic HIV-1
Vaccines with Therapeutic Benefits . . . 577--614
Andrei Korobeinikov Lyapunov Functions and Global Stability
for SIR and SIRS Epidemiological Models
with Non--Linear Transmission . . . . . 615--626
David A. Edwards Convection Effects in the BIAcore
Dextran Layer: Surface Reaction Model 627--654
Kalle Parvinen Evolution of Dispersal in a Structured
Metapopulation Model in Discrete Time 655--678
Junling Ma and
David J. D. Earn Generality of the Final Size Formula for
an Epidemic of a Newly Invading
Infectious Disease . . . . . . . . . . . 679--702
Juan J. Nieto and
A. Torres and
D. N. Georgiou and
T. E. Karakasidis Fuzzy polynucleotide spaces and metrics 703--725
Bo Deng Why is the Number of DNA Bases 4? . . . 727--733
Maykel Pérez González and
Julio Caballero and
Aliuska Morales Helguera and
Miguel Garriga and
Gerardo González and
Michael Fernández $2$D Autocorrelation Modelling of the
Inhibitory Activity of
Cytokinin--Derived Cyclin--Dependent
Kinase Inhibitors . . . . . . . . . . . 735--751
Lo\"\ic Forest and
Jacques Demongeot Cellular Modelling of Secondary Radial
Growth in Conifer Trees: Application to
\bionamePinus radiata (D. Don) . . . . . 753--784
M. G. Sadovsky Information capacity of nucleotide
sequences and Its applications . . . . . 785--806
Peder A. Tyvand and
Steinar Thorvaldsen Markov Model of Haploid Random Mating
with Given Distribution of Population
Size . . . . . . . . . . . . . . . . . . 807--819
M. Recker and
S. Gupta Conflicting immune responses can prolong
the length of infection in Plasmodium
falciparum malaria . . . . . . . . . . . 821--835
Angela Gallegos and
Barbara Mazzag and
Alex Mogilner Two continuum models for the spreading
of myxobacteria swarms . . . . . . . . . 837--861
C. Y. Chen and
J. R. King Modelling the Effect of Caveolae on
G-protein Activation . . . . . . . . . . 863--888
E. S. McBryde and
G. Gibson and
A. N. Pettitt and
Y. Zhang and
B. Zhao and
D. L. S. McElwain Bayesian modelling of an epidemic of
severe acute respiratory syndrome . . . 889--917
Stephen J. Willson Unique Reconstruction of Tree-Like
Phylogenetic Networks from Distances
Between Leaves . . . . . . . . . . . . . 919--944
Dagmar Iber and
Iain D. Campbell Integrin activation --- the importance
of a positive feedback . . . . . . . . . 945--956
Sa Xiao and
Shu-Yan Chen and
Gang Wang An ESS for the Height of a Plant
Population, or an Optimal Height for an
Individual? --- Rethinking
Game-Theoretic Models for Plant Height 957--967
Anonymous \booktitleBulletin of Mathematical
Biology Special Issue . . . . . . . . . 969--980
Iain Barrass and
Edmund J. Crampin and
Philip K. Maini Mode Transitions in a Model
Reaction--Diffusion System Driven by
Domain Growth and Noise . . . . . . . . 981--995
Raya Khanin and
Itzchak Parnas and
Hanna Parnas On the Feedback Between Theory and
Experiment in Elucidating the Molecular
Mechanisms Underlying Neurotransmitter
Release . . . . . . . . . . . . . . . . 997--1009
Rob J. De Boer and
Vitaly V. Ganusov and
Dejan Milutinovi\'c and
Philip D. Hodgkin and
Alan S. Perelson Estimating Lymphocyte Division and Death
Rates from CFSE Data . . . . . . . . . . 1011--1031
Evelyn Fox Keller Science as a Medium for Friendship: How
the Keller--Segel Models Came About . . 1033--1037
Oleksii Sliusarenko and
Jing Chen and
George Oster From Biochemistry to Morphogenesis in
Myxobacteria . . . . . . . . . . . . . . 1039--1051
E. N. Cytrynbaum and
V. Rodionov and
A. Mogilner Nonlocal Mechanism of Self-Organization
and Centering of Microtubule Asters . . 1053--1072
Ramit Mehr Feedback Loops, Reversals and
Nonlinearities in Lymphocyte Development 1073--1094
Albert Goldbeter Oscillations and waves of cyclic AMP in
Dictyostelium: a prototype for
spatio-temporal organization and
pulsatile intercellular communication 1095--1109
Junling Ma and
Simon A. Levin The Evolution of Resource Adaptation:
How Generalist and Specialist Consumers
Evolve . . . . . . . . . . . . . . . . . 1111--1123
Xiaoyi He and
Daniel Coombs and
David G. Myszka and
Byron Goldstein A Theoretical and Experimental Study of
Competition Between Solution and Surface
Receptors for Ligand in a Biacore Flow
Cell . . . . . . . . . . . . . . . . . . 1125--1150
Michael J. Ward Asymptotic Methods for
Reaction--Diffusion Systems: Past and
Present . . . . . . . . . . . . . . . . 1151--1167
Athanasius F. M. Marée and
Alexandra Jilkine and
Adriana Dawes and
Verônica A. Grieneisen and
Leah Edelstein-Keshet Polarization and Movement of
Keratocytes: a Multiscale Modelling
Approach . . . . . . . . . . . . . . . . 1169--1211
Irun R. Cohen Informational Landscapes in Art,
Science, and Evolution . . . . . . . . . 1213--1229
Liviu Movileanu and
Dumitru Popescu and
Stelian Ion and
Aurel I. Popescu Transbilayer Pores Induced by Thickness
Fluctuations . . . . . . . . . . . . . . 1231--1255
L. Sacerdote and
A. E. P. Villa and
C. Zucca On the Classification of Experimental
Data Modeled Via a Stochastic Leaky
Integrate and Fire Model Through
Boundary Values . . . . . . . . . . . . 1257--1274
Oskar Hagberg and
Carsten Wiuf Convergence properties of the degree
distribution of some growing network
models . . . . . . . . . . . . . . . . . 1275--1291
A. Chakraborty and
D. K. Bhattacharaya A Process-Based Mathematical Model on
Methane Production with Emission Indices
for Control . . . . . . . . . . . . . . 1293--1314
David Hiebeler Moment Equations and Dynamics of a
Household SIS Epidemiological Model . . 1315--1333
Antonio S. Torralba and
Yoel Rodríguez Susceptibilities of an Irreversible
Michaelis--Menten Enzyme . . . . . . . . 1335--1353
M. B. Jones and
D. L. S. McElwain and
G. R. Fulford and
M. J. Collins and
A. P. Roberts The Effect of the Lipid Layer on Tear
Film Behaviour . . . . . . . . . . . . . 1355--1381
William J. Heuett and
Hong Qian A Stochastic Model of Oscillatory Blood
Testosterone Levels . . . . . . . . . . 1383--1399
Stefan Reinker and
Yue-Xian Li and
Rachel Kuske Noise-Induced Coherence and Network
Oscillations in a Reduced Bursting Model 1401--1427
Eric J. Mapes and
Mark F. Schumaker Framework Models of Ion Permeation
Through Membrane Channels and the
Generalized King--Altman Method . . . . 1429--1460
R. Varón and
E. Valero and
M. Molina-Alarcón and
F. García-Cánovas and
F. García-Molina and
M. E. Fuentes and
M. García-Moreno Expressions for the Fractional
Modification in Different Monocyclic
Enzyme Cascade Systems: Analysis of
their Validity Tested by Numerical
Integration . . . . . . . . . . . . . . 1461--1493
Khalid Boushaba and
Howard A. Levinea and
Marit Nilsen-Hamilton A Mathematical Model for the Regulation
of Tumor Dormancy Based on Enzyme
Kinetics . . . . . . . . . . . . . . . . 1495--1526
Maykel Cruz-Monteagudo and
Humberto González-Díaz and
Eugenio Uriarte Simple Stochastic Fingerprints Towards
Mathematical Modeling in Biology and
Medicine 2. Unifying Markov Model for
Drugs Side Effects . . . . . . . . . . . 1527--1554
Maykel Cruz-Monteagudo and
Humberto González-Díaz and
Fernanda Borges and
Yenny González-Díaz Simple stochastic fingerprints towards
mathematical modeling in biology and
medicine. 3. Ocular irritability
classification model . . . . . . . . . . 1555--1572
Natalia L. Komarova Spatial Stochastic Models for Cancer
Initiation and Progression . . . . . . . 1573--1599
Chad M. Topaz and
Andrea L. Bertozzi and
Mark A. Lewis A Nonlocal Continuum Model for
Biological Aggregation . . . . . . . . . 1601--1623
Mariano Marcano and
Anita T. Layton and
Harold E. Layton An Optimization Algorithm for a
Distributed--Loop Model of an Avian
Urine Concentrating Mechanism . . . . . 1625--1660
R. Chignola and
P. Dai Pra and
L. M. Morato and
P. Siri Proliferation and Death in a Binary
Environment: a Stochastic Model of
Cellular Ecosystems . . . . . . . . . . 1661--1680
Marc R. Roussel and
Rui Zhu Stochastic kinetics description of a
simple transcription model . . . . . . . 1681--1713
Tini Garske Error Thresholds in a
Mutation--selection Model with
Hopfield-type Fitness . . . . . . . . . 1715--1746
Wilfred Ndifon and
Asamoah Nkwanta and
Dwayne Hill Some Probabilistic Results on the
Nonrandomness of Simple Sequence Repeats
in DNA Sequences . . . . . . . . . . . . 1747--1759
J. P. Keener How \bionameSalmonella typhimurium
measures the length of flagellar
filaments . . . . . . . . . . . . . . . 1761--1778
Frank Diederichs Mathematical Simulation of Membrane
Processes and Metabolic Fluxes of the
Pancreatic $\beta$-cell . . . . . . . . 1779--1818
A. Tosin and
D. Ambrosi and
L. Preziosi Mechanics and Chemotaxis in the
Morphogenesis of Vascular Networks . . . 1819--1836
Liang Li and
Gang Wang The ideal free distribution of clonal
plant's ramets among patches in a
heterogeneous environment . . . . . . . 1837--1850
Wendy Gruner Graves and
Bruce Peckham and
John Pastor A Bifurcation Analysis of a Differential
Equations Model for Mutualism . . . . . 1851--1872
S. R. Lubkin and
X. Wan Optimizing Detection of Tissue
Anisotropy by Fluorescence Recovery
after Photobleaching . . . . . . . . . . 1873--1891
V. Colizza and
A. Barrat and
M. Barthélemy and
A. Vespignani The Modeling of Global Epidemics:
Stochastic Dynamics and Predictability 1893--1921
Tibor Antal and
István Scheuring Fixation of Strategies for an
Evolutionary Game in Finite Populations 1923--1944
Marcelo Otero and
Hernán G. Solari and
Nicolás Schweigmann A Stochastic Population Dynamics Model
for Aedes Aegypti: Formulation and
Application to a City with Temperate
Climate . . . . . . . . . . . . . . . . 1945--1974
A. A. Neville and
P. C. Matthews and
H. M. Byrne Interactions Between Pattern Formation
and Domain Growth . . . . . . . . . . . 1975--2003
D. M. Bortz and
P. W. Nelson Model Selection and Mixed--Effects
Modeling of HIV Infection Dynamics . . . 2005--2025
T. Roose and
S. J. Chapman and
P. K. Maini A Mathematical Model for Simultaneous
Spatio--Temporal Dynamics of Calcium and
Inositol 1,4,5-Trisphosphate in
Madin--Darby Canine Kidney Epithelial
Cells . . . . . . . . . . . . . . . . . 2027--2051
Valeria Isaeva and
Eugene Presnov and
Alexey Chernyshev Topological Patterns in Metazoan
Evolution and Development . . . . . . . 2053--2067
John E. Franke and
Abdul-Aziz Yakubu Signature Function for Predicting
Resonant and Attenuant Population
$2$-cycles . . . . . . . . . . . . . . . 2069--2104
A. B. Gumel and
Connell C. McCluskey and
P. van den Driessche Mathematical Study of a
Staged--Progression HIV Model with
Imperfect Vaccine . . . . . . . . . . . 2105--2128
Frithjof Lutscher and
Mark A. Lewis and
Edward McCauley Effects of Heterogeneity on Spread and
Persistence in Rivers . . . . . . . . . 2129--2160
Gideon A. Ngwa On the Population Dynamics of the
Malaria Vector . . . . . . . . . . . . . 2161--2189
Miranda I. Teboh-Ewungkem and
Eric P. Salathe The Role of Counter--Current Exchange in
Preventing Hypoxia in Skeletal Muscle 2191--2204
Alejandra C. Ventura and
James Sneyd Calcium Oscillations and Waves Generated
by Multiple Release Mechanisms in
Pancreatic Acinar Cells . . . . . . . . 2205--2231
Christina Warrender and
Stephanie Forrest and
Frederick Koster Modeling Intercellular Interactions in
Early Mycobacterium Infection . . . . . 2233--2261
F. A. B. Coutinhoa and
M. N. Burattinia and
L. F. Lopeza and
E. Massada Threshold Conditions for a
Non--Autonomous Epidemic System
Describing the Population Dynamics of
Dengue . . . . . . . . . . . . . . . . . 2263--2282
Sharene D. Bungay and
Patricia A. Gentry and
Rodney D. Gentry Modelling Thrombin Generation in Human
Ovarian Follicular Fluid . . . . . . . . 2283--2302
Shovonlal Roy and
S. Alam and
J. Chattopadhyay Competing Effects of Toxin-Producing
Phytoplankton on Overall Plankton
Populations in the Bay of Bengal . . . . 2303--2320
Philip K. Maini and
Mark Chaplain and
Achi Dosanjh Editorial . . . . . . . . . . . . . . . 1--1
Johannes K. Krottje and
Arjen van Ooyen A Mathematical Framework for Modeling
Axon Guidance . . . . . . . . . . . . . 3--31
A. D. Lander and
Q. Nie and
F. Y. M. Wan Membrane-Associated Non--Receptors and
Morphogen Gradients . . . . . . . . . . 33--54
T. Mugwagwa and
G. Witten Coreceptor Switching in HIV-1 Subtype B
and Subtype C . . . . . . . . . . . . . 55--75
Hiromi Seno and
Mikiko Shigemoto A Mathematical Modelling for the
Cheliped Regeneration with Handedness in
Fiddler Crab . . . . . . . . . . . . . . 77--92
Michael G. Zager and
Paul M. Schlosser and
Hien T. Tran A Delayed Nonlinear PBPK Model for
Genistein Dosimetry in Rats . . . . . . 93--117
Ken Arii and
Raphaëlle Derome and
Lael Parrott Examining the potential effects of
species aggregation on the network
structure of food webs . . . . . . . . . 119--133
Maia Martcheva and
Benjamin M. Bolker The Impact of the Allee Effect in
Dispersal and Patch--Occupancy Age on
the Dynamics of Metapopulations . . . . 135--156
Paula K. Denman and
D. L. Sean McElwain and
Damien G. Harkin and
Zee Upton Mathematical Modelling of Aerosolised
Skin Grafts Incorporating Keratinocyte
Clonal Subtypes . . . . . . . . . . . . 157--179
Jan I. Freijer and
Teun M. Post and
Bart A. Ploeger and
Joost DeJongh and
Meindert Danhof Application of the
Convection--Dispersion Equation to
Modelling Oral Drug Absorption . . . . . 181--195
T. Alarcón and
M. J. Tindall Modelling Cell Growth and its Modulation
of the $ G_1 $ /S Transition . . . . . . 197--214
Marco V. José and
Eberto R. Morgado and
Tzipe Govezensky An Extended RNA Code and its
Relationship to the Standard Genetic
Code: an Algebraic and Geometrical
Approach . . . . . . . . . . . . . . . . 215--243
V. K. Pustovalov and
B. Jean Melanin Granule Models for the Processes
of Laser-Induced Thermal Damage in
Pigmented Retinal Tissues. I. Modeling
of Laser-Induced Heating of Melanosomes
and Selective Thermal Processes in
Retinal Tissues . . . . . . . . . . . . 245--263
Holly D. Gaff and
Louis J. Gross Modeling Tick-Borne Disease: a
Metapopulation Model . . . . . . . . . . 265--288
D. J. Lubkin and
E. A. Gaffney and
J. R. Blake A Viscoelastic Traction Layer Model of
Muco--Ciliary Transport . . . . . . . . 289--327
Hanna T. M. Eskola and
Stefan A. H. Geritz On the Mechanistic Derivation of Various
Discrete--Time Population Models . . . . 329--346
Maykel Pérez González and
Carmen Terán and
Marta Teijeira and
Aliuska Morales Helguera QSAR Studies Using Radial Distribution
Function for Predicting A$_1$ Adenosine
Receptors Agonists . . . . . . . . . . . 347--359
Nadav Skjòndal-Bara and
David R. Morrisb Dynamic Model of the Process of Protein
Synthesis in Eukaryotic Cells . . . . . 361--393
Robert Sturm and
W. Hofmann Stochastic Modeling Predictions for the
Clearance of Insoluble Particles from
the Tracheobronchial Tree of the Human
Lung . . . . . . . . . . . . . . . . . . 395--415
R. N. Bearon A Model for Bacterial Colonization of
Sinking Aggregates . . . . . . . . . . . 417--431
Morten Gram Pedersena and
Alberto M. Bersanib and
Enrico Bersanic The Total Quasi--Steady-State
Approximation for Fully Competitive
Enzyme Reactions . . . . . . . . . . . . 433--457
David G. Schaeffer and
John W. Cain and
Daniel J. Gauthier and
Soma S. Kalb and
Robert A. Oliver and
Elena G. Tolkacheva and
Wenjun Ying and
Wanda Krassowska An Ionically Based Mapping Model with
Memory for Cardiac Restitution . . . . . 459--482
Olivier Cinquin and
Karen M. Page Generalized, Switch-Like Competitive
Heterodimerization Networks . . . . . . 483--494
Paula K. Denman and
D. L. Sean McElwain and
John Norbury Analysis of Travelling Waves Associated
with the Modelling of Aerosolised Skin
Grafts . . . . . . . . . . . . . . . . . 495--523
Richard J. Hall and
Simon Gubbins and
Christopher A. Gilligan Evaluating the Performance of Chemical
Control in the Presence of Resistant
Pathogens . . . . . . . . . . . . . . . 525--537
Robert Mach and
Frank Schweitzer Modeling Vortex Swarming In Daphnia . . 539--562
B. M. Adams and
H. T. Banks and
M. Davidian and
E. S. Rosenberg Estimation and Prediction With
HIV--Treatment Interruption Data . . . . 563--584
Jari Niemi and
Ulla Ruotsalainen and
Antti Saarinen and
Keijo Ruohonen Stochastic Dynamic Model for Estimation
of Rate Constants and Their Variances
from Noisy and Heterogeneous PET
Measurements . . . . . . . . . . . . . . 585--604
Graeme P. Boswell and
Helen Jacobs and
Karl Ritz and
Geoffrey M. Gadd and
Fordyce A. Davidson The Development of Fungal Networks in
Complex Environments . . . . . . . . . . 605--634
Robert A. Gatenby and
B. Roy Frieden Information Theory in Living Systems,
Methods, Applications, and Challenges 635--657
C. Huia and
M. A. McGeoch Spatial Patterns of Prisoner's Dilemma
Game in Metapopulations . . . . . . . . 659--676
Christian J. Michel An Analytical Model of Gene Evolution
with 9 Mutation Parameters: an
Application to the Amino Acids Coded by
the Common Circular Code . . . . . . . . 677--698
Jean M. Tchuenche Theoretical Population Dynamics Model of
a Genetically Transmitted Disease:
Sickle--Cell Anaemia . . . . . . . . . . 699--730
Shujing Gao and
Lansun Chen and
Zhidong Teng Impulsive Vaccination of an SEIRS Model
with Time Delay and Varying Total
Population Size . . . . . . . . . . . . 731--745
Ehsan Jabbarzadeh and
Cameron F. Abrams Simulations of Chemotaxis and Random
Motility in $2$D Random Porous Domains 747--764
Erik Alpkvista and
Isaac Klapper A Multidimensional Multispecies
Continuum Model for Heterogeneous
Biofilm Development . . . . . . . . . . 765--789
Erica Fleishman Book Review: R. Ferri\`ere, U.
Dieckmann, and D. Couvet, editors:
\booktitleEvolutionary Conservation
Biology, Cambridge University Press,
ISBN 0-521-82700-0, 2004, \$95.00} . . . 791--793
Martín Romero Introduction to statistics through
resampling methods and R/S-Plus . . . . 795--796
Jukka Corander and
Mats Gyllenberg and
Timo Koski Random Partition Models and
Exchangeability for Bayesian
Identification of Population Structure 797--815
D. J. Smith and
E. A. Gaffney and
J. R. Blake A Model of Tracer Transport in Airway
Surface Liquid . . . . . . . . . . . . . 817--836
Max Shpaka and
Stephen R. Proulx The Role of Life Cycle and Migration in
Selection for Variance in Offspring
Number . . . . . . . . . . . . . . . . . 837--860
William S. C. Gurney and
A. Roy Veitch The Dynamics of Size-at-Age Variability 861--885
Anita T. Layton Role of UTB Urea Transporters in the
Urine Concentrating Mechanism of the Rat
Kidney . . . . . . . . . . . . . . . . . 887--929
Marcus R. Garvie Finite-Difference Schemes for
Reaction--Diffusion Equations Modeling
Predator--Prey Interactions in MATLAB 931--956
N. F. Britton and
R. Planqué and
N. R. Franks Evolution of Defence Portfolios in
Exploiter--Victim Systems . . . . . . . 957--988
P. Cull Population Models: Stability in One
Dimension . . . . . . . . . . . . . . . 989--1017
Kai Hu Terminal Twist-Induced Writhe of DNA
with Intrinsic Curvature . . . . . . . . 1019--1030
C. J. Bampfylde and
M. A. Lewis Biological Control Through Intraguild
Predation: Case Studies in Pest Control,
Invasive Species and Range Expansion . . 1031--1066
Nicolas Bacaër Approximation of the Basic Reproduction
Number $ R_0 $ for Vector-Borne Diseases
with a Periodic Vector Population . . . 1067--1091
W. Garrett Mitchener Game Dynamics with Learning and
Evolution of Universal Grammar . . . . . 1093--1118
Raul Rueda Book Review: \booktitleBayesian Logical
Data Analysis for the Physical Sciences:
a Comparative Approach with Mathematica
Support by P. C. Gregory. Hardcover: 486
pages. Cambridge University Press. ISBN
0-521-84150-X, \$75.00} . . . . . . . . 1119--1120
Roger M. Luther and
Mark Broom and
Graeme D. Ruxton Is Food Worth Fighting for? ESS's in
Mixed Populations of Kleptoparasites and
Foragers . . . . . . . . . . . . . . . . 1121--1146
M. J. Tindall and
C. P. Please Modelling the Cell Cycle and Cell
Movement in Multicellular Tumour
Spheroids . . . . . . . . . . . . . . . 1147--1165
Lars Witting Behavioural Interactions Selecting for
Symmetry and Asymmetry in Sexual
Reproductive Systems of Eusocial Species 1167--1198
Peter Dittrich and
Pietro Speroni di Fenizio Chemical Organisation Theory . . . . . . 1199--1231
E. August and
K. H. Parker and
M. Barahona A Dynamical Model of Lipoprotein
Metabolism . . . . . . . . . . . . . . . 1233--1254
Mike Mesterton-Gibbons and
Tom N. Sherratt Social Eavesdropping: a Game-Theoretic
Analysis . . . . . . . . . . . . . . . . 1255--1276
S. Bhattacharyya and
D. K. Bhattacharya A More Realistic Approach to
Pest-Management Problem . . . . . . . . 1277--1310
B. Nyquist and
R. Tyson and
K. Larsen Modelling Recolonization of
Second-Growth Forest Stands by the North
American Red Squirrel
\bionameTamiasciurus hudsonicus . . . . 1311--1339
T. de-Camino-Beck and
M. A. Lewis A New Method for Calculating Net
Reproductive Rate from Graph Reduction
with Applications to the Control of
Invasive Species . . . . . . . . . . . . 1341--1354
Ying-Hen Hsieh and
P. van den Driessche and
Lin Wang Impact of Travel Between Patches for
Spatial Spread of Disease . . . . . . . 1355--1375
Yi Tao and
Ross Cressman Stochastic Fluctuations Through
Intrinsic Noise in Evolutionary Game
Dynamics . . . . . . . . . . . . . . . . 1377--1399
E. J. Guirey and
M. A. Bees and
A. P. Martin and
M. A. Srokosz and
M. J. R. Fasham Emergent Features Due to Grid-Cell
Biology: Synchronisation in Biophysical
Models . . . . . . . . . . . . . . . . . 1401--1422
Felix Olasagasti and
Alvaro Moreno and
Juli Peretó and
Federico Morán Energetically Plausible Model of a
Self-Maintaining Protocellular System 1423--1445
Lo\"\ic Forest and
Jacques Demongeot Erratum: Cellular Modelling of Secondary
Radial Growth in Conifer Trees:
Application to \bionamePinus radiata (D.
Don) . . . . . . . . . . . . . . . . . . 1447--1447
D. J. Smith and
E. A. Gaffney and
J. R. Blake A Viscoelastic Traction Layer Model of
Muco-Ciliary Transport . . . . . . . . . 1449--1449
Nadav Skjòndal-Bara and
David R. Morris Erratum: Dynamic Model of the Process of
Protein Synthesis in Eukaryotic Cells 1451--1451
Monica-Gabriela Cojocaru and
Chris T. Bauch and
Matthew D. Johnston Dynamics of Vaccination Strategies via
Projected Dynamical Systems . . . . . . 1453--1476
D. J. Smith and
E. A. Gaffney and
J. R. Blake Discrete Cilia Modelling with
Singularity Distributions: Application
to the Embryonic Node and the Airway
Surface Liquid . . . . . . . . . . . . . 1477--1510
Zhilan Feng and
Dashun Xu and
Haiyun Zhao Epidemiological Models with
Non--Exponentially Distributed Disease
Stages and Applications to Disease
Control . . . . . . . . . . . . . . . . 1511--1536
R. Eftimie and
G. de Vries and
M. A. Lewis and
F. Lutscher Modeling Group Formation and Activity
Patterns in Self-Organizing Collectives
of Individuals . . . . . . . . . . . . . 1537--1565
Pawel Paszek Modeling Stochasticity in Gene
Regulation: Characterization in the
Terms of the Underlying Distribution
Function . . . . . . . . . . . . . . . . 1567--1601
Ilya Ioslovich and
Per-Olof Gutman Evaluation of Experiments for Estimation
of Dynamical Crop Model Parameters . . . 1603--1614
Frithjof Lutscher A Short Note on Short Dispersal Events 1615--1630
Julio A. Hernández A General Model for the Dynamics of the
Cell Volume . . . . . . . . . . . . . . 1631--1648
Margarete Utz and
Éva Kisdi and
Michael Doebeli Quasi-Local Competition in
Stage--Structured Metapopulations: a New
Mechanism of Pattern Formation . . . . . 1649--1672
Britta Basse and
Paolo Ubezio A Generalised Age- and Phase--Structured
Model of Human Tumour Cell Populations
Both Unperturbed and Exposed to a Range
of Cancer Therapies . . . . . . . . . . 1673--1690
Frank Kozusko and
Michele Bourdeau and
Zeljko Bajzer and
David Dingli A Microenvironment Based Model of
Antimitotic Therapy of Gompertzian Tumor
Growth . . . . . . . . . . . . . . . . . 1691--1708
Stephen J. Willson Unique Determination of Some Homoplasies
at Hybridization Events . . . . . . . . 1709--1725
Melissa Vellela and
Hong Qian A Quasistationary Analysis of a
Stochastic Chemical Reaction: Keizer's
Paradox . . . . . . . . . . . . . . . . 1727--1746
Steven D. Webb and
Markus R. Owen and
Helen M. Byrne and
Craig Murdoch and
Claire E. Lewis Macrophage-Based Anti-Cancer Therapy:
Modelling Different Modes of Tumour
Targeting . . . . . . . . . . . . . . . 1747--1776
David J. Bergman and
Jacob S. Ishay Do Bees and Hornets Use Acoustic
Resonance in Order to Monitor and
Coordinate Comb Construction? . . . . . 1777--1790
David F. Anderson and
Jonathan C. Mattingly and
H. Frederik Nijhout and
Michael C. Reed Propagation of Fluctuations in
Biochemical Systems, I: Linear SSC
Networks . . . . . . . . . . . . . . . . 1791--1813
J.-L. Torres and
D. Castillo-Guajardo and
M. Equihua and
O. Pérez-Maqueo and
V. Sosa and
L. Torres On a New Method to Study Drastic Change
in Ecosystems . . . . . . . . . . . . . 1815--1826
Helen J. Edwards and
Calvin Dytham and
Jonathan W. Pitchford and
David Righton Prey Selection, Vertical Migrations and
the Impacts of Harvesting Upon the
Population Dynamics of a Predator-Prey
System . . . . . . . . . . . . . . . . . 1827--1846
Svetlana Bunimovich-Mendrazitsky and
Eliezer Shochat and
Lewi Stone Mathematical Model of BCG Immunotherapy
in Superficial Bladder Cancer . . . . . 1847--1870
Andrei Korobeinikov Global Properties of Infectious Disease
Models with Nonlinear Incidence . . . . 1871--1886
T. R. Mollee and
A. J. Bracken A Model of Solute Transport through
\bionameStratum Corneum Using Solute
Capture and Release . . . . . . . . . . 1887--1907
Abhyudai Singh and
João Pedro Hespanha A Derivative Matching Approach to Moment
Closure for the Stochastic Logistic
Model . . . . . . . . . . . . . . . . . 1909--1925
Carina M. Edwards and
S. Jonathan Chapman Biomechanical Modelling of Colorectal
Crypt Budding and Fission . . . . . . . 1927--1942
Alexandra Jilkine and
Athanasius F. M. Marée and
Leah Edelstein-Keshet Mathematical Model for Spatial
Segregation of the Rho-Family GTPases
Based on Inhibitory Crosstalk . . . . . 1943--1978
Mark F. Schumaker Single-Occupancy Binding in Simple
Bounded and Unbounded Systems . . . . . 1979--2003
Alex Cook and
Glenn Marion and
Adam Butler and
Gavin Gibson Bayesian Inference for the
Spatio--Temporal Invasion of Alien
Species . . . . . . . . . . . . . . . . 2005--2025
Libin Rong and
Zhilan Feng and
Alan S. Perelson Emergence of HIV-1 Drug Resistance
During Antiretroviral Treatment . . . . 2027--2060
Z. Mukandavire and
W. Garira Age and Sex Structured Model for
Assessing the Demographic Impact of
Mother-to-Child Transmission of HIV/AIDS 2061--2092
Gary R. Huxel Antagonistic and Synergistic
Interactions Among Predators . . . . . . 2093--2104
Bo Deng The Origin of Two Sexes Through
Optimization of Recombination Entropy
Against Time and Energy . . . . . . . . 2105--2114
C. Hui and
M. A. McGeoch Spatial Patterns of Prisoner's Dilemma
Game in Metapopulations . . . . . . . . 2115--2115
F. A. B. Coutinho and
M. N. Burattini and
L. F. Lopez and
E. Massad Threshold Conditions for a
Non-Autonomous Epidemic System
Describing the Population Dynamics of
Dengue . . . . . . . . . . . . . . . . . 2117--2117
Kerry A. Landman and
Anna Q. Cai and
Barry D. Hughes Travelling Waves of Attached and
Detached Cells in a Wound--Healing Cell
Migration Assay . . . . . . . . . . . . 2119--2138
H. T. Banks and
John E. Banks and
Lara K. Dick and
John D. Stark Estimation of Dynamic Rate Parameters in
Insect Populations Undergoing Sublethal
Exposure to Pesticides . . . . . . . . . 2139--2180
Eunok Jung A Mathematical Model of Valveless
Pumping: a Lumped Model with
Time-Dependent Compliance, Resistance,
and Inertia . . . . . . . . . . . . . . 2181--2198
Jonathan P. Whiteley and
Martin J. Bishop and
David J. Gavaghan Soft Tissue Modelling of Cardiac Fibres
for Use in Coupled Mechano-Electric
Simulations . . . . . . . . . . . . . . 2199--2225
B. Boldin and
M. J. M. Bonten and
O. Diekmann Relative Effects of Barrier Precautions
and Topical Antibiotics on Nosocomial
Bacterial Transmission: Results of
Multi-compartment Models . . . . . . . . 2227--2248
R. B. Campbell Coalescent Size Versus Coalescent Time
with Strong Selection . . . . . . . . . 2249--2259
Uri Yerushalmi and
Mina Teicher Examining Emergence of Functional Gene
Clustering in a Simulated Evolution . . 2261--2280
Boris Baeumer and
Mihály Kovács and
Mark M. Meerschaert Fractional Reproduction--Dispersal
Equations and Heavy Tail Dispersal
Kernels . . . . . . . . . . . . . . . . 2281--2297
E. Shochat and
V. Rom-Kedar and
L. A. Segel G-CSF Control of Neutrophils Dynamics in
the Blood . . . . . . . . . . . . . . . 2299--2338
Robert Stephen Cantrell and
Chris Cosner Density Dependent Behavior at Habitat
Boundaries and the Allee Effect . . . . 2339--2360
Colleen L. Ball and
Michael A. Gilchrist and
Daniel Coombs Modeling Within-Host Evolution of HIV:
Mutation, Competition and Strain
Replacement . . . . . . . . . . . . . . 2361--2385
S. C. Nicolis Kinetics of Aggregate Formation in
Social Insects . . . . . . . . . . . . . 2387--2403
Kerry A. Landman and
Anna Q. Cai Cell Proliferation and Oxygen Diffusion
in a Vascularising Scaffold . . . . . . 2405--2428
A. N. Gorban and
A. Y. Zinovyev The Mystery of Two Straight Lines in
Bacterial Genome Statistics . . . . . . 2429--2442
Max Shpak and
Stephen R. Proulx The Role of Life Cycle and Migration in
Selection for Variance in Offspring
Number . . . . . . . . . . . . . . . . . 2443--2443
Erik Alpkvist and
Isaac Klapper A Multidimensional Multispecies
Continuum Model for Heterogeneous
Biofilm Development . . . . . . . . . . 2445--2445
C. N. Podder and
O. Sharomi and
A. B. Gumel and
S. Moses To Cut or Not to Cut: a Modeling
Approach for Assessing the Role of Male
Circumcision in HIV Control . . . . . . 2447--2466
Sylvie Coscoy and
Etienne Huguet and
François Amblard Statistical Analysis of Sets of Random
Walks: How to Resolve Their Generating
Mechanism . . . . . . . . . . . . . . . 2467--2492
J. Guedj and
R. Thiébaut and
D. Commenges Practical Identifiability of HIV
Dynamics Models . . . . . . . . . . . . 2493--2513
Koichiro Uriu and
Yoh Iwasa Turing Pattern Formation with Two Kinds
of Cells and a Diffusive Chemical . . . 2515--2536
Tailei Zhang and
Zhidong Teng On a Nonautonomous SEIRS Model in
Epidemiology . . . . . . . . . . . . . . 2537--2559
Stephen J. Willson Reconstruction of Some Hybrid
Phylogenetic Networks with Homoplasies
from Distances . . . . . . . . . . . . . 2561--2590
Karen A. Yokley and
Marina V. Evans An Example of Model Structure
Differences Using Sensitivity Analyses
in Physiologically Based Pharmacokinetic
Models of Trichloroethylene in Humans 2591--2625
O. Krakovska and
L. M. Wahl Drug-Sparing Regimens for HIV
Combination Therapy: Benefits Predicted
for ``Drug Coasting'' . . . . . . . . . 2627--2647
S. Ghosh and
S. Bhattacharyya and
D. K. Bhattacharya The Role of Viral Infection in Pest
Control: a Mathematical Study . . . . . 2649--2691
R. W. Wright and
Alan Hastings Spontaneous Patchiness in a
Host--Parasitoid Integrodifference Model 2693--2709
Timothy C. Reluga and
Jan Medlock and
Eric Poolman and
Alison P. Galvani Optimal Timing of Disease Transmission
in an Age-Structured Population . . . . 2711--2722
Peter Huggins and
Lior Pachter and
Bernd Sturmfels Toward the Human Genotope . . . . . . . 2723--2735
I. J. Stamper and
H. M. Byrne and
M. R. Owen and
P. K. Maini Modelling the Role of Angiogenesis and
Vasculogenesis in Solid Tumour Growth 2737--2772
Martín Romero Book Review: \booktitleIntroduction to
Computer--Intensive Methods of Data
Analysis in Biology by Derek A. Roff . . 2773--2774
Arturo Rojo-Domínguez Book Review: Srinivas Aluru (ed):
\booktitleHandbook of Computational
Molecular Biology . . . . . . . . . . . 2775--2776
J. David Logan Phenologically-Structured Predator-Prey
Dynamics with Temperature Dependence . . 1--20
Ha Youn Lee and
Alan S. Perelson Modeling T Cell Proliferation and Death
in Vitro Based on Labeling Data:
Generalizations of the Smith--Martin
Cell Cycle Model . . . . . . . . . . . . 21--44
Emma Y. Jin and
Jing Qin and
Christian M. Reidys Combinatorics of RNA Structures with
Pseudoknots . . . . . . . . . . . . . . 45--67
Julie V. Stern and
Hinke M. Osinga and
Andrew LeBeau and
Arthur Sherman Resetting Behavior in a Model of
Bursting in Secretory Pituitary Cells:
Distinguishing Plateaus from
Pseudo--Plateaus . . . . . . . . . . . . 68--88
Harsh V. Jain and
Jacques E. Nör and
Trachette L. Jackson Modeling the VEGF--Bcl-2--CXCL8 Pathway
in Intratumoral Agiogenesis . . . . . . 89--117
Junling Ma and
P. van den Driessche Case Fatality Proportion . . . . . . . . 118--133
Sze-Bi Hsu and
Ying-Hen Hsieh On the Role of Asymptomatic Infection in
Transmission Dynamics of Infectious
Diseases . . . . . . . . . . . . . . . . 134--155
Victor Kasatkin and
Alain Prochiantz and
David Holcman Morphogenetic Gradients and the
Stability of Boundaries Between
Neighboring Morphogenetic Regions . . . 156--178
G. Camelo-Neto and
Ana T. C. Silva and
L. Giuggioli and
V. M. Kenkre Effect of Predators of Juvenile Rodents
on the Spread of the Hantavirus Epidemic 179--188
David A. Cameron and
David J. Ivers and
Theodore A. Evans and
Mary R. Myerscough Optimal Reproduction Strategies in Two
Species of Mound-Building Termites . . . 189--209
Ning-Ning Pang and
Wen-Jer Tzeng On the Long--Term Fitness of Cells in
Periodically Switching Environments . . 210--235
Frederick R. Adler and
Jessica M. C. Pearce-Duvet and
M. Denise Dearing How Host Population Dynamics Translate
into Time-Lagged Prevalence: an
Investigation of \bionameSin Nombre
Virus in Deer Mice . . . . . . . . . . . 236--252
Bradley G. Wagner and
David J. D. Earn Circulating Vaccine Derived Polio
Viruses and their Impact on Global Polio
Eradication . . . . . . . . . . . . . . 253--280
D. I. Cattoni and
O. Chara Vacuum Effects over the Closing of
Enterocutaneous Fistulae: a Mathematical
Modeling Approach . . . . . . . . . . . 281--296
Jun Zhang and
Stanly L. Steinberg and
Bridget S. Wilson and
Janet M. Oliver and
Lance R. Williams Markov Random Field Modeling of the
Spatial Distribution of Proteins on Cell
Membranes . . . . . . . . . . . . . . . 297--321
M. B. Jones and
G. R. Fulford and
C. P. Please and
D. L. S. McElwain and
M. J. Collins Elastohydrodynamics of the Eyelid Wiper 323--343
V. Lemesle and
J. L. Gouzé A Simple Unforced Oscillatory Growth
Model in the Chemostat . . . . . . . . . 344--357
Gianni Gilioli and
Sara Pasquali and
Fabrizio Ruggeri Bayesian Inference for Functional
Response in a Stochastic Predator--Prey
System . . . . . . . . . . . . . . . . . 358--381
Murray E. Alexander and
Seyed M. Moghadas and
Gergely Röst and
Jianhong Wu A Delay Differential Model for Pandemic
Influenza with Antiviral Treatment . . . 382--397
Andrew Whittle and
Suzanne Lenhart and
K. A. J. White Optimal Control of Gypsy Moth
Populations . . . . . . . . . . . . . . 398--411
Sergei Petrovskii and
Rod Blackshaw and
Bai-Lian Li Consequences of the Allee Effect and
Intraspecific Competition on Population
Persistence under Adverse Environmental
Conditions . . . . . . . . . . . . . . . 412--437
Tsuyoshi Hirashima and
Yoh Iwasa and
Yoshihiro Morishita Distance between AER and ZPA Is Defined
by Feed-Forward Loop and Is Stabilized
by their Feedback Loop in Vertebrate
Limb Bud . . . . . . . . . . . . . . . . 438--459
Mark Alber and
Tilmann Glimm and
H. G. E. Hentschel and
Bogdan Kazmierczak and
Yong-Tao Zhang and
Jianfeng Zhu and
Stuart A. Newman The Morphostatic Limit for a Model of
Skeletal Pattern Formation in the
Vertebrate Limb . . . . . . . . . . . . 460--483
R. E. Lee DeVille and
Eric Vanden-Eijnden Regularity and Synchrony in Motor
Proteins . . . . . . . . . . . . . . . . 484--516
V. N. Biktashev and
R. Suckley and
Y. E. Elkin and
R. D. Simitev Asymptotic Analysis and Analytical
Solutions of a Model of Cardiac
Excitation . . . . . . . . . . . . . . . 517--554
Karen A. Yokley and
Hien Tran and
Paul M. Schlosser Sensory Irritation Response in Rats:
Modeling, Analysis and Validation . . . 555--588
Luis F. Gordillo and
Stephen A. Marion and
Anders Martin-Löf and
Priscilla E. Greenwood Bimodal Epidemic Size Distributions for
Near-Critical SIR with Vaccination . . . 589--602
Ellen Baake and
Inke Herms Single-Crossover Dynamics: Finite versus
Infinite Populations . . . . . . . . . . 603--624
J. López-Sauceda and
J. L. Aragón Eutacticity in Sea Urchin Evolution . . 625--634
Saralees Nadarajah and
Samuel Kotz The Exact Distribution of Divergence
Times . . . . . . . . . . . . . . . . . 635--640
Octavio Miramontes Book Review: \booktitleComplex Systems
in Biomedicine. A. Quarteroni, L.
Formaggia and A. Veneziani (eds) . . . . 641--642
Michel E. Beleza Yamagishi and
Alex Itiro Shimabukuro Nucleotide Frequencies in Human Genome
and Fibonacci Numbers . . . . . . . . . 643--653
J. M. Lee and
T. Hillen and
M. A. Lewis Continuous Traveling Waves for
Prey--Taxis . . . . . . . . . . . . . . 654--676
Katarzyna A. Rejniak and
Alexander R. A. Anderson A Computational Study of the Development
of Epithelial Acini: I. Sufficient
Conditions for the Formation of a Hollow
Structure . . . . . . . . . . . . . . . 677--712
William Floyd and
Leslie Kay and
Michael Shapiro Some Elementary Properties of SIR
Networks or, Can I Get Sick because You
Got Vaccinated? . . . . . . . . . . . . 713--727
Peter S. Kim and
Peter P. Lee and
Doron Levy Modeling Imatinib--Treated Chronic
Myelogenous Leukemia: Reducing the
Complexity of Agent-Based Models . . . . 728--744
D. M. Bortz and
T. L. Jackson and
K. A. Taylor and
A. P. Thompson and
J. G. Younger Klebsiella pneumoniae Flocculation
Dynamics . . . . . . . . . . . . . . . . 745--768
Naveen K. Vaidya and
Jianhong Wu Modeling Spruce Budworm Population
Revisited: Impact of Physiological
Structure on Outbreak Control . . . . . 769--784
Hulin Wu and
Haihong Zhu and
Hongyu Miao and
Alan S. Perelson Parameter Identifiability and Estimation
of HIV\slash AIDS Dynamic Models . . . . 785--799
N. G. Cogan Two-Fluid Model of Biofilm Disinfection 800--819
Michael P. Atkinson and
Lawrence M. Wein Quantifying the Routes of Transmission
for Pandemic Influenza . . . . . . . . . 820--867
N. Bessonov and
N. Morozova and
V. Volpert Modeling of Branching Patterns in Plants 868--893
Elamin H. Elbasha Global Stability of Equilibria in a
Two-Sex HPV Vaccination Model . . . . . 894--909
Tatiana Sulman and
Leonid B. Katsnelson and
Olga Solovyova and
Vladimir S. Markhasin Mathematical Modeling of Mechanically
Modulated Rhythm Disturbances in
Homogeneous and Heterogeneous Myocardium
with Attenuated Activity of
Na$^+$--K$^+$ Pump . . . . . . . . . . . 910--949
Emma Y. Jin and
Christian M. Reidys Asymptotic Enumeration of RNA Structures
with Pseudoknots . . . . . . . . . . . . 951--970
Tim Rudge and
Kevin Burrage Effects of Intrinsic and Extrinsic Noise
Can Accelerate Juxtacrine Pattern
Formation . . . . . . . . . . . . . . . 971--991
A. Bertuzzi and
A. Fasano and
A. Gandolfi and
C. Sinisgalli Reoxygenation and Split-Dose Response to
Radiation in a Tumour Model with
Krogh-Type Vascular Geometry . . . . . . 992--1012
Derin B. Wysham and
Alan Hastings Sudden Shifts in Ecological Systems:
Intermittency and Transients in the
Coupled Ricker Population Model . . . . 1013--1031
Atul Narang and
Sergei S. Pilyugin Bistability of the lac Operon During
Growth of \bionameEscherichia coli on
Lactose and Lactose $+$ Glucose . . . . 1032--1064
Daniel John Lawson and
Henrik Jeldtoft Jensen Understanding Clustering in Type Space
Using Field Theoretic Techniques . . . . 1065--1081
Tanja Gernhard New Analytic Results for Speciation
Times in Neutral Models . . . . . . . . 1082--1097
Shigui Ruan and
Dongmei Xiao and
John C. Beier On the Delayed Ross--Macdonald Model for
Malaria Transmission . . . . . . . . . . 1098--1114
Frederick A. Matsen and
Elchanan Mossel and
Mike Steel Mixed-up Trees: the Structure of
Phylogenetic Mixtures . . . . . . . . . 1115--1139
Tufail Malik and
Hal L. Smith Does Dormancy Increase Fitness of
Bacterial Populations in Time-Varying
Environments? . . . . . . . . . . . . . 1140--1162
C. P. Bhunu and
W. Garira and
Z. Mukandavire and
M. Zimba Tuberculosis Transmission Model with
Chemoprophylaxis and Treatment . . . . . 1163--1191
Xingzhou Yang and
Robert H. Dillon and
Lisa J. Fauci An Integrative Computational Model of
Multiciliary Beating . . . . . . . . . . 1192--1215
Norberto Aníbal Maidana and
Wilson Castro Ferreira, Jr. The Geographic Spread of ``El mal de las
caderas'' in Capybaras
(\bionameHydrochaeris hydrochaeris) . . 1216--1234
Sladjana Spasic and
Milka Culic and
Gordana Grbic and
Ljiljana Martac and
Slobodan Sekulic and
Dragosav Mutavdzic Spectral and Fractal Analysis of
Cerebellar Activity After Single and
Repeated Brain Injury . . . . . . . . . 1235--1249
Moisés Santillán and
Eduardo S. Zeron Analytical Study of the Multiplicity of
Regulatory Mechanisms in the Tryptophan
Operon . . . . . . . . . . . . . . . . . 1250--1250
Richard Bertram and
Rudy C. Arceo II A Mathematical Study of the Differential
Effects of Two SERCA Isoforms on
Ca$^{2+}$ Oscillations in Pancreatic
Islets . . . . . . . . . . . . . . . . . 1251--1271
Nakul Chitnis and
James M. Hyman and
Jim M. Cushing Determining Important Parameters in the
Spread of Malaria Through the
Sensitivity Analysis of a Mathematical
Model . . . . . . . . . . . . . . . . . 1272--1296
Marcelo Otero and
Nicolás Schweigmann and
Hernán G. Solari A Stochastic Spatial Dynamical Model for
Aedes Aegypti . . . . . . . . . . . . . 1297--1325
Michela Masé and
Leon Glass and
Flavia Ravelli A Model for Mechano--Electrical Feedback
Effects on Atrial Flutter Interval
Variability . . . . . . . . . . . . . . 1326--1347
J. R. Stirling and
M. S. Zakynthinaki and
V. Billat Modeling and Analysis of the Effect of
Training on $ \dot {V}O_2 $ Kinetics and
Anaerobic Capacity . . . . . . . . . . . 1348--1370
A. B. Potapov and
M. A. Lewis Allee Effect and Control of Lake System
Invasion . . . . . . . . . . . . . . . . 1371--1397
Julio Aracena Maximum Number of Fixed Points in
Regulatory Boolean Networks . . . . . . 1398--1409
Arne Traulsen and
Noam Shoresh and
Martin A. Nowak Analytical Results for Individual and
Group Selection of Any Intensity . . . . 1410--1424
E. Arribas and
A. Muñoz-Lopez and
M. J. Garcia-Meseguer and
A. Lopez-Najera and
L. Avalos and
F. Garcia-Molina and
M. Garcia-Moreno and
R. Varon Mean Lifetime and First-Passage Time of
the Enzyme Species Involved in an Enzyme
Reaction. Application to Unstable Enzyme
Systems . . . . . . . . . . . . . . . . 1425--1449
Katarzyna A. Rejniak and
Alexander R. A. Anderson A Computational Study of the Development
of Epithelial Acini: II. Necessary
Conditions for Structure and Lumen
Stability . . . . . . . . . . . . . . . 1450--1479
Kurt E. Anderson and
Roger M. Nisbet and
Edward McCauley Transient Responses to Spatial
Perturbations in Advective Systems . . . 1480--1502
Allan R. Willms and
Dominic Nelson A Geometric Comparison of Single Chain
Multi-State Models of Ion Channel Gating 1503--1524
M. J. Tindall and
S. L. Porter and
P. K. Maini and
G. Gaglia and
J. P. Armitage Overview of Mathematical Approaches Used
to Model Bacterial Chemotaxis I: The
Single Cell . . . . . . . . . . . . . . 1525--1569
M. J. Tindall and
P. K. Maini and
S. L. Porter and
J. P. Armitage Overview of Mathematical Approaches Used
to Model Bacterial Chemotaxis II:
Bacterial Populations . . . . . . . . . 1570--1607
R. E. Lee DeVille and
Charles S. Peskin Synchrony and Asynchrony in a Fully
Stochastic Neural Network . . . . . . . 1608--1633
Ariane Verdy and
Hal Caswell Sensitivity Analysis of Reactive
Ecological Dynamics . . . . . . . . . . 1634--1659
Tomá\vs Gedeon and
Konstantin Mischaikow and
Kate Patterson and
Eliane Traldi When Activators Repress and Repressors
Activate: a Qualitative Analysis of the
Shea--Ackers Model . . . . . . . . . . . 1660--1683
Doron Levy and
Tiago Requeijo Stochastic Models for Phototaxis . . . . 1684--1706
Amina Eladdadi and
David Isaacson A Mathematical Model for the Effects of
HER2 Overexpression on Cell
Proliferation in Breast Cancer . . . . . 1707--1729
Eric L. Haseltine and
Vy Lam and
John Yin and
James B. Rawlings Image-Guided Modeling of Virus Growth
and Spread . . . . . . . . . . . . . . . 1730--1748
Hongyu Miao and
Carrie Dykes and
Lisa M. Demeter and
James Cavenaugh and
Sung Yong Park and
Alan S. Perelson and
Hulin Wu Modeling and Estimation of Kinetic
Parameters and Replicative Fitness of
HIV-1 from Flow-Cytometry-Based Growth
Competition Experiments . . . . . . . . 1749--1771
Tiina Roose and
Andrew C. Fowler Network Development in Biological Gels:
Role in Lymphatic Vessel Development . . 1772--1789
Mark Kot and
Michael G. Neubert Saddle-Point Approximations,
Integrodifference Equations, and
Invasions . . . . . . . . . . . . . . . 1790--1826
Marjolein E. Lof and
Rampal S. Etienne and
James Powell and
Maarten de Gee and
Lia Hemerik The Effect of Chemical Information on
the Spatial Distribution of Fruit Flies:
I. Model Results . . . . . . . . . . . . 1827--1849
Maarten de Gee and
Marjolein E. Lof and
Lia Hemerik The Effect of Chemical Information on
the Spatial Distribution of Fruit Flies:
II. Parameterization, Calibration, and
Sensitivity . . . . . . . . . . . . . . 1850--1868
Fred Brauer Epidemic Models with Heterogeneous
Mixing and Treatment . . . . . . . . . . 1869--1885
Ruijun Zhao and
Fabio Augusto Milner A Mathematical Model of
\bionameSchistosoma mansoni in
\bionameBiomphalaria glabrata with
Control Strategies . . . . . . . . . . . 1886--1905
S. Grünewald and
K. T. Huber and
Q. Wu Two Novel Closure Rules for Constructing
Phylogenetic Super-Networks . . . . . . 1906--1924
Neli R. S. Ortega and
Fabiano S. Santos and
Dirce M. T. Zanetta and
Eduardo Massad A Fuzzy Reed--Frost Model for Epidemic
Spreading . . . . . . . . . . . . . . . 1925--1936
Daniel Campos and
Vicenç Méndez and
Vicente Ortega-Cejas Lattice Models for Invasions through
Patchy Environments . . . . . . . . . . 1937--1956
Yoshihiro Morishita and
Yoh Iwasa Growth Based Morphogenesis of Vertebrate
Limb Bud . . . . . . . . . . . . . . . . 1957--1978
Richard Bertram and
Joseph Rhoads and
Wendy P. Cimbora A Phantom Bursting Mechanism for
Episodic Bursting . . . . . . . . . . . 1979--1993
Peter S. Kim and
Peter P. Lee and
Doron Levy A PDE Model for Imatinib-Treated Chronic
Myelogenous Leukemia . . . . . . . . . . 1994--2016
N. Bairagi and
R. R. Sarkar and
J. Chattopadhyay Impacts of Incubation Delay on the
Dynamics of an Eco-Epidemiological
System --- A Theoretical Study . . . . . 2017--2038
Michael Bode and
Kerrie Wilson and
Marissa McBride and
Hugh Possingham Optimal Dynamic Allocation of
Conservation Funding Among Priority
Regions . . . . . . . . . . . . . . . . 2039--2054
Svetlana Bunimovich-Mendrazitsky and
Helen Byrne and
Lewi Stone Mathematical Model of Pulsed
Immunotherapy for Superficial Bladder
Cancer . . . . . . . . . . . . . . . . . 2055--2076
Barbara Boldin Persistence and Spread of
Gastro-Intestinal Infections: the Case
of Enterotoxigenic \bionameEscherichia
coli in Piglets . . . . . . . . . . . . 2077--2101
Yue-Xian Li and
Anmar Khadra Robust Synchrony and Rhythmogenesis in
Endocrine Neurons via Autocrine
Regulations In Vitro and In Vivo . . . . 2103--2125
Elamin H. Elbasha and
Erik J. Dasbach and
Ralph P. Insinga A Multi-Type HPV Transmission Model . . 2126--2176
Sara Larsson and
Tobias Rydén and
Ulla Holst and
Stina Oredsson and
Maria Johansson Estimating the Total Rate of DNA
Replication Using Branching Processes 2177--2194
Min Su and
Cang Hui and
YanYu Zhang and
Zizhen Li Spatiotemporal Dynamics of the Epidemic
Transmission in a Predator--Prey System 2195--2210
Richard Bertram and
Yue-Xian Li A Mathematical Model for the Actions of
Activin, Inhibin, and Follistatin on
Pituitary Gonadotrophs . . . . . . . . . 2211--2228
E. A. Gaffney and
J. K. Heath and
M. Z. Kwiatkowska A Mass Action Model of a Fibroblast
Growth Factor Signaling Pathway and Its
Simplification . . . . . . . . . . . . . 2229--2263
Paul Hurtado The Potential Impact of Disease on the
Migratory Structure of a Partially
Migratory Passerine Population . . . . . 2264--2282
Tobias Jahnke and
Wilhelm Huisinga A Dynamical Low-Rank Approach to the
Chemical Master Equation . . . . . . . . 2283--2302
J. A. D. Wattis and
B. O'Malley and
H. Blackburn and
L. Pickersgill and
J. Panovska and
H. M. Byrne and
K. G. Jackson Mathematical Model for Low Density
Lipoprotein (LDL) Endocytosis by
Hepatocytes . . . . . . . . . . . . . . 2303--2333
S. Jonathan Chapman and
Rebecca J. Shipley and
Rossa Jawad Multiscale Modeling of Fluid Transport
in Tumors . . . . . . . . . . . . . . . 2334--2357
Nicola J. Armstrong and
Kevin J. Painter and
Jonathan A. Sherratt Adding Adhesion to a Chemical Signaling
Model for Somite Formation . . . . . . . 1--24
E. G. Burkhead and
J. M. Hawkins and
D. K. Molinek A Dynamical Study of a Cellular Automata
Model of the Spread of HIV in a Lymph
Node . . . . . . . . . . . . . . . . . . 25--74
Andrei Korobeinikov Global Properties of SIR and SEIR
Epidemic Models with Multiple Parallel
Infectious Stages . . . . . . . . . . . 75--83
Yuri Bakhtin and
Christine E. Heitsch Large Deviations for Random Trees and
the Branching of RNA Secondary
Structures . . . . . . . . . . . . . . . 84--106
Hannah W. McKenzie and
Mark A. Lewis and
Evelyn H. Merrill First Passage Time Analysis of Animal
Movement and Insights into the
Functional Response . . . . . . . . . . 107--129
Eli E. Goldwyn and
Alan Hastings Small Heterogeneity Has Large Effects on
Synchronization of Ecological
Oscillators . . . . . . . . . . . . . . 130--144
Michael C. White and
Xiao-Qiang Zhao A Periodic Droop Model for Two Species
Competition in A Chemostat . . . . . . . 145--161
J. Latulippe and
M. Pernarowski A Nonautonomous Phenomenological Model
for On and Off Responses of Cells in
Sensory System . . . . . . . . . . . . . 162--188
Patrick De Leenheer Within-Host Virus Models with Periodic
Antiviral Therapy . . . . . . . . . . . 189--210
Jennifer A. Thackham and
D. L. Sean McElwain and
Ian W. Turner Computational Approaches to Solving
Equations Arising from Wound Healing . . 211--246
Caroline Colijn and
Ted Cohen and
Megan Murray Latent Coinfection and the Maintenance
of Strain Diversity . . . . . . . . . . 247--263
Christian M. Reidys Local Connectivity of Neutral Networks 265--290
Abbey J. Trewenack and
Kerry A. Landman A Traveling Wave Model for Invasion by
Precursor and Differentiated Cells . . . 291--317
S. Soubeyrand and
S. Neuvonen and
A. Penttinen Mechanical-Statistical Modeling in
Ecology: From Outbreak Detections to
Pest Dynamics . . . . . . . . . . . . . 318--338
David Bryant Hadamard Phylogenetic Methods and the
$n$-taxon Process . . . . . . . . . . . 339--351
Ryan Lukeman and
Yue-Xian Li and
Leah Edelstein-Keshet A Conceptual Model for Milling
Formations in Biological Aggregates . . 352--382
A. V. Melkikh and
V. D. Seleznev Model of Active Transport of Ions in
Archaea Cells . . . . . . . . . . . . . 383--398
H. Berestycki and
O. Diekmann and
C. J. Nagelkerke and
P. A. Zegeling Can a Species Keep Pace with a Shifting
Climate? . . . . . . . . . . . . . . . . 399--429
Mainul Haque Ratio-Dependent Predator--Prey Models of
Interacting Populations . . . . . . . . 430--452
Jason T. Noel and
Atul Narang Gene Regulation in Continuous Cultures:
a Unified Theory for Bacteria and Yeasts 453--514
Anita T. Layton and
Leon C. Moore and
Harold E. Layton Multistable Dynamics Mediated by
Tubuloglomerular Feedback in a Model of
Coupled Nephrons . . . . . . . . . . . . 515--555
W. Brent Lindquist and
Ivan D. Chase Data-Based Analysis of Winner--Loser
Models of Hierarchy Formation in Animals 556--584
Craig J. Thalhauser and
Tejas Sankar and
Mark C. Preul and
Yang Kuang Explicit Separation of Growth and
Motility in a New Tumor Cord Model . . . 585--601
Ingo Roeder and
Maria Herberg and
Matthias Horn An ``Age'' Structured Model of
Hematopoietic Stem Cell Organization
with Application to Chronic Myeloid
Leukemia . . . . . . . . . . . . . . . . 602--626
Jifa Jiang and
Zhipeng Qiu and
Jianhong Wu and
Huaiping Zhu Threshold Conditions for West Nile Virus
Outbreaks . . . . . . . . . . . . . . . 627--647
Wasima Rida and
Sonja Sandberg Modeling the Population Level Effects of
an HIV-1 Vaccine in an Era of Highly
Active Antiretroviral Therapy . . . . . 648--680
Jacques M. Bahi and
Christian J. Michel A Stochastic Model of Gene Evolution
with Time Dependent Pseudochaotic
Mutations . . . . . . . . . . . . . . . 681--700
Richard M. Vogel and
Jonathan R. M. Hosking and
Chris S. Elphick and
David L. Roberts and
J. Michael Reed Goodness of Fit of Probability
Distributions for Sightings as Species
Approach Extinction . . . . . . . . . . 701--719
Anna M. Foss and
Peter T. Vickerman and
Zaid Chalabi and
Philippe Mayaud and
Michel Alary and
Charlotte H. Watts Dynamic Modeling of Herpes Simplex Virus
Type-2 (HSV-2) Transmission: Issues in
Structural Uncertainty . . . . . . . . . 720--749
Liliana Félix and
Francesc Rosselló and
Gabriel Valiente Efficient Reconstruction of Metabolic
Pathways by Bidirectional Chemical
Search . . . . . . . . . . . . . . . . . 750--769
C. Z. Roux The Applicability of Ordinary Least
Squares to Consistently Short Distances
between Taxa in Phylogenetic Tree
Construction and the Normal Distribution
Test Consequences . . . . . . . . . . . 771--780
Matthew J. Simpson and
Kerry A. Landman and
Barry D. Hughes Distinguishing between Directed and
Undirected Cell Motility within an
Invading Cell Population . . . . . . . . 781--799
Lloyd Demetrius and
Stéphane Legendre and
Peter Harremöes Evolutionary Entropy: a Predictor of
Body Size, Metabolic Rate and Maximal
Life Span . . . . . . . . . . . . . . . 800--818
Maia Martcheva Evolutionary Consequences of Predation
for Pathogens in Prey . . . . . . . . . 819--844
Richard I. Joh and
Hao Wang and
Howard Weiss and
Joshua S. Weitz Dynamics of Indirectly Transmitted
Infectious Diseases with Immunological
Threshold . . . . . . . . . . . . . . . 845--862
Andrew Morozov and
Sergei Petrovskii Excitable Population Dynamics,
Biological Control Failure, and
Spatiotemporal Pattern Formation in a
Model Ecosystem . . . . . . . . . . . . 863--887
Istvan Z. Kiss and
Péter L. Simon and
Rowland R. Kao A Contact--Network-Based Formulation of
a Preferential Mixing Model . . . . . . 888--905
J. E. F. Green and
S. L. Waters and
K. M. Shakesheff and
H. M. Byrne A Mathematical Model of Liver Cell
Aggregation In Vitro . . . . . . . . . . 906--930
Yasuhiro Takeuchi and
Wendi Wang and
Shinji Nakaoka and
Shingo Iwami Dynamical Adaptation of Parental Care 931--951
Brian P. Yurk and
James A. Powell Modeling the Evolution of Insect
Phenology . . . . . . . . . . . . . . . 952--979
Donald A. Drew and
Gretchen A. Koch and
Heather Vellante and
Ronak Talati and
Oswaldo Sanchez Analyses of Mechanisms for Force
Generation During Cell Septation in
\bionameEscherichia coli . . . . . . . . 980--1005
Stefan Zeiser and
Uwe Franz and
Johannes Müller and
Volkmar Liebscher Hybrid Modeling of Noise Reduction by a
Negatively Autoregulated System . . . . 1006--1024
Osvaldo Chara and
Diego E. Pafundo and
Pablo J. Schwarzbaum Kinetics of Extracellular ATP from
Goldfish Hepatocytes: A Lesson from
Mathematical Modeling . . . . . . . . . 1025--1047
D. W. Verzi and
O. Y. Noris A Compartmental Model for
Activity--Dependent Dendritic Spine
Branching . . . . . . . . . . . . . . . 1048--1072
Sanjay Basu and
Alison P. Galvani The Evolution of Tuberculosis Virulence 1073--1088
J. T. Locsei and
T. J. Pedley Run and Tumble Chemotaxis in a Shear
Flow: The Effect of Temporal
Comparisons, Persistence, Rotational
Diffusion, and Cell Shape . . . . . . . 1089--1116
Kevin J. Painter Continuous Models for Cell Migration in
Tissues and Applications to Cell Sorting
via Differential Chemotaxis . . . . . . 1117--1147
Meng Gao Continuous Probabilistic Analysis to
Evolutionary Game Dynamics in Finite
Populations . . . . . . . . . . . . . . 1148--1159
Lauren O'Malley and
G. Korniss and
Thomas Caraco Ecological Invasion, Roughened Fronts,
and a Competitor's Extreme Advance:
Integrating Stochastic Spatial--Growth
Models . . . . . . . . . . . . . . . . . 1160--1188
Nikodem J. Pop\lawski and
Ubirajara Agero and
J. Scott Gens and
Maciej Swat and
James A. Glazier and
Alexander R. A. Anderson Front Instabilities and Invasiveness of
Simulated Avascular Tumors . . . . . . . 1189--1227
Chia-Yu Hsu and
Robert Dillon A $3$D Motile Rod-Shaped Monotrichous
Bacterial Model . . . . . . . . . . . . 1228--1263
Lee Altenberg The Evolutionary Reduction Principle for
Linear Variation in Genetic Transmission 1264--1284
Alan M. Weinstein and
Eduardo D. Sontag Modeling Proximal Tubule Cell
Homeostasis: Tracking Changes in Luminal
Flow . . . . . . . . . . . . . . . . . . 1285--1322
S. Strohm and
R. Tyson The Effect of Habitat Fragmentation on
Cyclic Population Dynamics: a Numerical
Study . . . . . . . . . . . . . . . . . 1323--1348
Sergei P. Atamas and
Jonathan Bell Degeneracy-Driven Self-Structuring
Dynamics in Selective Repertoires . . . 1349--1365
Daniel A. Beard and
Fan Wu Apparent Diffusivity and Taylor
Dispersion of Water and Solutes in
Capillary Beds . . . . . . . . . . . . . 1366--1377
Gustavo Cruz-Pacheco and
Lourdes Esteva and
Cristobal Vargas Seasonality and Outbreaks in West Nile
Virus Infection . . . . . . . . . . . . 1378--1393
Thomas Fournier and
Jean-Pierre Gabriel and
Christian Mazza and
Jerôme Pasquier and
José Galbete and
Nicolas Mermod Stochastic Models and Numerical
Algorithms for a Class of Regulatory
Gene Networks . . . . . . . . . . . . . 1394--1431
Michael K. Fenwick and
Fernando A. Escobedo Exploration of Factors Affecting the
Onset and Maturation Course of
Follicular Lymphoma through Simulations
of the Germinal Center . . . . . . . . . 1432--1462
Rodrigo T. N. Cardoso and
André R. da Cruz and
Elizabeth F. Wanner and
Ricardo H. C. Takahashi Multi-Objective Evolutionary
Optimization of Biological Pest Control
with Impulsive Dynamics in Soybean Crops 1463--1481
Saziye Bayram and
Tracy L. Stepien and
E. Bruce Pitman TGF-Mediated Dynamics in a System of
Many Coupled Nephrons . . . . . . . . . 1482--1506
Bart Haegeman and
Rampal S. Etienne Neutral Models with Generalised
Speciation . . . . . . . . . . . . . . . 1507--1519
C. Pozrikidis Numerical Simulation of Blood Flow
Through Microvascular Capillary Networks 1520--1541
Zachary Cooper and
Michael Greenwood and
Borbala Mazzag A Computational Analysis of Localized
Ca$^{2+}$-Dynamics Generated by
Heterogeneous Release Sites . . . . . . 1543--1579
Anna Grosberg and
Morteza Gharib and
Arash Kheradvar Effect of Fiber Geometry on Pulsatile
Pumping and Energy Expenditure . . . . . 1580--1598
Chetan J. Gadgil Size-Independent Differences between the
Mean of Discrete Stochastic Systems and
the Corresponding Continuous
Deterministic Systems . . . . . . . . . 1599--1611
Claudia Carrillo and
Kirill Cherednichenko and
Nicholas Britton and
Michael Mogie Dynamic Coexistence of Sexual and
Asexual Invasion Fronts in a System of
Integro--Difference Equations . . . . . 1612--1625
Heikki Haario and
Leonid Kalachev and
Marko Laine Reduced Models of Algae Growth . . . . . 1626--1648
Ha Youn Lee and
Edwin Hawkins and
Martin S. Zand and
Tim Mosmann and
Hulin Wu and
Philip D. Hodgkin and
Alan S. Perelson Interpreting CFSE Obtained Division
Histories of B Cells in Vitro with
Smith--Martin and Cyton Type Models . . 1649--1670
Sebastian C. Hensel and
James B. Rawlings and
John Yin Stochastic Kinetic Modeling of Vesicular
Stomatitis Virus Intracellular Growth 1671--1692
Thomas House and
Geoffrey Davies and
Leon Danon and
Matt J. Keeling A Motif-Based Approach to Network
Epidemics . . . . . . . . . . . . . . . 1693--1706
Paul E. Hand and
Boyce E. Griffith and
Charles S. Peskin Deriving Macroscopic Myocardial
Conductivities by Homogenization of
Microscopic Models . . . . . . . . . . . 1707--1726
Vicenç Méndez and
Daniel Campos and
Andy W. Sheppard A Model for Plant Invasions: the Role of
Distributed Generation Times . . . . . . 1727--1744
C. P. Bhunu and
W. Garira and
Z. Mukandavire Modeling HIV\slash AIDS and Tuberculosis
Coinfection . . . . . . . . . . . . . . 1745--1780
Nicolas Bacaër Periodic Matrix Population Models:
Growth Rate, Basic Reproduction Number,
and Entropy . . . . . . . . . . . . . . 1781--1792
R. Hambrock and
Y. Lou The Evolution of Conditional Dispersal
Strategies in Spatially Heterogeneous
Habitats . . . . . . . . . . . . . . . . 1793--1817
Naoki Masuda and
Hisashi Ohtsuki A Theoretical Analysis of Temporal
Difference Learning in the Iterated
Prisoner's Dilemma Game . . . . . . . . 1818--1850
Diego A. Oyarzún and
Brian P. Ingalls and
Richard H. Middleton and
Dimitrios Kalamatianos Sequential Activation of Metabolic
Pathways: a Dynamic Optimization
Approach . . . . . . . . . . . . . . . . 1851--1872
Jianjun Paul Tian and
Xiao-Song Lin The Mutation Process in Colored
Coalescent Theory . . . . . . . . . . . 1873--1889
Marcos A. Capistrán and
Miguel A. Moreles and
Bruno Lara Parameter Estimation of Some Epidemic
Models. The Case of Recurrent Epidemics
Caused by Respiratory Syncytial Virus 1890--1901
Martin Camitz and
Åke Svensson The Effect of Time Distribution Shape on
a Complex Epidemic Model . . . . . . . . 1902--1913
Atilla Sit and
Zhijun Wu and
Yaxiang Yuan A Geometric Buildup Algorithm for the
Solution of the Distance Geometry
Problem Using Least--Squares
Approximation . . . . . . . . . . . . . 1914--1933
Diomar Cristina Mistro and
Luiz Alberto Díaz Rodrigues and
Maria Cristina Varriale The Role of Spatial Refuges in Coupled
Map Lattice Model for Host--Parasitoid
Systems . . . . . . . . . . . . . . . . 1934--1953
Nicolas Bacaër and
M. Gabriela M. Gomes On the Final Size of Epidemics with
Seasonality . . . . . . . . . . . . . . 1954--1966
Wenxia Ying and
Gabriel Huerta and
Stanly Steinberg and
Martha Zúñiga Time Series Analysis of Particle
Tracking Data for Molecular Motion on
the Cell Membrane . . . . . . . . . . . 1967--2024
Sanyi Tang and
Robert A. Cheke and
Yanni Xiao Effects of Predator and Prey Dispersal
on Success or Failure of Biological
Control . . . . . . . . . . . . . . . . 2025--2047
Jing Li and
Xingfu Zou Modeling Spatial Spread of Infectious
Diseases with a Fixed Latent Period in a
Spatially Continuous Domain . . . . . . 2048--2079
Zhipeng Qiu and
Zhilan Feng Transmission Dynamics of an Influenza
Model with Vaccination and Antiviral
Treatment . . . . . . . . . . . . . . . 1--33
Anita T. Layton and
Aurélie Edwards Tubuloglomerular Feedback Signal
Transduction in a Short Loop of Henle 34--62
Miranda I. Teboh-Ewungkem and
Chandra N. Podder and
Abba B. Gumel Mathematical Study of the Role of
Gametocytes and an Imperfect Vaccine on
Malaria Transmission Dynamics . . . . . 63--93
Lud\vek Berec Impacts of Foraging Facilitation Among
Predators on Predator-prey Dynamics . . 94--121
Ying-Hen Hsieh and
Cathy W. S. Chen and
Shu-Fang Hsu Schmitz and
Chwan-Chuan King and
Wei-Ju Chen and
Yi-Chun Wu and
Mei-Shang Ho Candidate Genes Associated with
Susceptibility for SARS-Coronavirus . . 122--132
Hamid Reza Noori and
Willi Jäger Neurochemical Oscillations in the Basal
Ganglia . . . . . . . . . . . . . . . . 133--147
Vitaliy Gyrya and
Igor S. Aranson and
Leonid V. Berlyand and
Dmitry Karpeev A Model of Hydrodynamic Interaction
Between Swimming Bacteria . . . . . . . 148--183
Hanna T. M. Eskola and
Kalle Parvinen The Allee Effect in Mechanistic Models
Based on Inter-individual Interaction
Processes . . . . . . . . . . . . . . . 184--207
Mareike Fischer and
Bhalchandra Thatte Revisiting an Equivalence Between
Maximum Parsimony and Maximum Likelihood
Methods in Phylogenetics . . . . . . . . 208--220
Stewart D. Johnson Theoretical Considerations of Fisher's
Theorem in Small At-Risk Populations . . 221--229
Brynja R. Kohler and
Rebecca J. Swank and
James W. Haefner and
James A. Powell Leading Students to Investigate
Diffusion as a Model of Brine Shrimp
Movement . . . . . . . . . . . . . . . . 230--257
A. M. de Roos and
O. Diekmann and
P. Getto and
M. A. Kirkilionis Numerical Equilibrium Analysis for
Structured Consumer Resource Models . . 259--297
Kenneth H. Norwich A Mathematical Exploration of the
Mystery of Loudness Adaptation . . . . . 298--313
Mariano Marcano and
Anita T. Layton and
Harold E. Layton Maximum Urine Concentrating Capability
in a Mathematical Model of the Inner
Medulla of the Rat Kidney . . . . . . . 314--339
Stephen J. Willson Properties of Normal Phylogenetic
Networks . . . . . . . . . . . . . . . . 340--358
Rainer K. Sachs and
Lynn Hlatky A Rapid-Mutation Approximation for Cell
Population Dynamics . . . . . . . . . . 359--374
Emma Y. Jin and
Christian M. Reidys Irreducibility in RNA Structures . . . . 375--399
P. Moreo and
E. A. Gaffney and
J. M. García-Aznar and
M. Doblaré On the Modelling of Biological Patterns
with Mechanochemical Models: Insights
from Analysis and Computation . . . . . 400--431
Vicenç Méndez and
Daniel Campos and
Isaac Llopis and
Werner Horsthemke Extinction and Chaotic Patterns in Map
Lattices Under Hostile Conditions . . . 432--443
Nuno M. Oliveira and
Frank M. Hilker Modelling Disease Introduction as
Biological Control of Invasive Predators
to Preserve Endangered Prey . . . . . . 444--468
Matt Biesecker and
Jung-Han Kimn and
Huitian Lu and
David Dingli and
\vZeljko Bajzer Optimization of Virotherapy for Cancer 469--489
Konstantin B. Blyuss and
Yuliya N. Kyrychko Stability and Bifurcations in an
Epidemic Model with Varying Immunity
Period . . . . . . . . . . . . . . . . . 490--505
Cammey C. Manning and
Paul M. Schlosser and
Hien T. Tran A Multicompartment Liver-based
Pharmacokinetic Model for Benzene and
its Metabolites in Mice . . . . . . . . 507--540
Tomá\vs Gedeon and
Clara Bodelón and
Amy Kuenzi Hantavirus Transmission in Sylvan and
Peridomestic Environments . . . . . . . 541--564
Mark A. Lewis and
William Nelson and
Cailin Xu A Structured Threshold Model for
Mountain Pine Beetle Outbreak . . . . . 565--589
Jonathan L. Mitchell and
Thomas W. Carr Oscillations in an Intra-host Model of
\bionamePlasmodium falciparum Malaria
Due to Cross-reactive Immune Response 590--610
Peter S. Kim and
Peter P. Lee and
Doron Levy Emergent Group Dynamics Governed by
Regulatory Cells Produce a Robust
Primary T Cell Response . . . . . . . . 611--644
S. Schamberg and
P. Houston and
N. A. M. Monk and
M. R. Owen Modelling and Analysis of Planar Cell
Polarity . . . . . . . . . . . . . . . . 645--680
Horacio Gómez-Acevedo and
Michael Y. Li and
Steven Jacobson Multistability in a Model for CTL
Response to HTLV-I Infection and Its
Implications to HAM/TSP Development and
Prevention . . . . . . . . . . . . . . . 681--696
Martin Brown and
Fei He and
Stephen J. Wilkinson Properties of the Proximate Parameter
Tuning Regularization Algorithm . . . . 697--718
Ruth E. Baker and
Christian A. Yates and
Radek Erban From Microscopic to Macroscopic
Descriptions of Cell Migration on
Growing Domains . . . . . . . . . . . . 719--762
Ying-Hen Hsieh and
Cathy W. S. Chen and
Shu-Fang Hsu Schmitz and
Chwan-Chuan King and
Wei-Ju Chen and
Yi-Chun Wu and
Mei-Shang Ho Erratum to: Candidate Genes Associated
with Susceptibility for SARS-Coronavirus 763--763
Meagan C. Herald General Model of Inflammation . . . . . 765--779
Majid Bani-Yaghoub and
David E. Amundsen Dynamics of Notch Activity in a Model of
Interacting Signaling Pathways . . . . . 780--804
Jinzhi Lei and
You Song Mathematical Model of the Formation of
Morphogen Gradients Through
Membrane-Associated Non-receptors . . . 805--829
Trachette Jackson and
Xiaoming Zheng A Cell-based Model of Endothelial Cell
Migration, Proliferation and Maturation
During Corneal Angiogenesis . . . . . . 830--868
F. Diotallevi and
B. M. Mulder and
J. Grasman On the Robustness of the Geometrical
Model for Cell Wall Deposition . . . . . 869--895
Alex James and
Jonathan W. Pitchford and
Michael J. Plank Efficient or Inaccurate? Analytical and
Numerical Modelling of Random Search
Strategies . . . . . . . . . . . . . . . 896--913
Bassidy Dembele and
Avner Friedman and
Abdul-Aziz Yakubu Mathematical Model for Optimal Use of
Sulfadoxine-Pyrimethamine as a Temporary
Malaria Vaccine . . . . . . . . . . . . 914--930
Luju Liu and
Xiao-Qiang Zhao and
Yicang Zhou A Tuberculosis Model with Seasonality 931--952
Tanner Crowder and
Chi-Kwong Li Studying Genetic Code by a Matrix
Approach . . . . . . . . . . . . . . . . 953--972
Sébastien Michelin and
Eric Lauga The Long-Time Dynamics of Two
Hydrodynamically-Coupled Swimming Cells 973--1005
Kbenesh W. Blayneh and
Abba B. Gumel and
Suzanne Lenhart and
Tim Clayton Backward Bifurcation and Optimal Control
in Transmission Dynamics of West Nile
Virus . . . . . . . . . . . . . . . . . 1006--1028
Yangjin Kim and
Avner Friedman Interaction of Tumor with Its
Micro-environment: A Mathematical Model 1029--1068
A. Bertuzzi and
C. Bruni and
A. Fasano and
A. Gandolfi and
F. Papa and
C. Sinisgalli Response of Tumor Spheroids to
Radiation: Modeling and Parameter
Estimation . . . . . . . . . . . . . . . 1069--1091
D. Brian Walton and
Benjamin P. Leard and
Anthony Tongen An Optimal Strategy for Energy
Allocation in a Multiple Resource
Environment . . . . . . . . . . . . . . 1092--1123
G. P. Karev Replicator Equations and the Principle
of Minimal Production of Information . . 1124--1142
Benjamin L. Vaughan, Jr. and
Bryan G. Smith and
David L. Chopp The Influence of Fluid Flow on Modeling
Quorum Sensing in Bacterial Biofilms . . 1143--1165
François Hamel and
Julien Fayard and
Lionel Roques Spreading Speeds in Slowly Oscillating
Environments . . . . . . . . . . . . . . 1166--1191
Gang Huang and
Yasuhiro Takeuchi and
Wanbiao Ma and
Daijun Wei Global Stability for Delay SIR and SEIR
Epidemic Models with Nonlinear Incidence
Rate . . . . . . . . . . . . . . . . . . 1192--1207
Freda Wasserstein-Robbins A Mathematical Model of HIV Infection:
Simulating T4, T8, Macrophages,
Antibody, and Virus via Specific
Anti-HIV Response in the Presence of
Adaptation and Tropism . . . . . . . . . 1208--1253
Allison Kolpas and
Roger M. Nisbet Effects of Demographic Stochasticity on
Population Persistence in Advective
Media . . . . . . . . . . . . . . . . . 1254--1270
William S. C. Gurney and
Eddie McKenzie and
Philip J. Bacon Maturity Dispersion, Stock
Auto-Correlation, and Management
Strategy in Exploited Populations . . . 1271--1293
Marcos Amaku and
Marcelo Nascimento Burattini and
Francisco Antonio Bezerra Coutinho and
Eduardo Massad Modeling the Dynamics of Viral Evolution
Considering Competition Within
Individual Hosts and at Population
Level: The Effects of Treatment . . . . 1294--1314
J. H. Jackson and
C. R. MacCluer Hyperbolic Saturation . . . . . . . . . 1315--1322
Timothy J. Larkin and
Philip W. Kuchel Mathematical Models of Naturally
``Morphed'' Human Erythrocytes:
Stomatocytes and Echinocytes . . . . . . 1323--1333
Brian P. Yurk and
James A. Powell Modeling the Effects of Developmental
Variation on Insect Phenology . . . . . 1334--1360
Samik Datta and
Gustav W. Delius and
Richard Law A Jump-Growth Model for Predator--Prey
Dynamics: Derivation and Application to
Marine Ecosystems . . . . . . . . . . . 1361--1382
A. M. Middleton and
J. R. King and
M. J. Bennett and
M. R. Owen Mathematical Modelling of the Aux/IAA
Negative Feedback Loop . . . . . . . . . 1383--1407
Paul E. Hand and
Charles S. Peskin Homogenization of an
Electrophysiological Model for a Strand
of Cardiac Myocytes with Gap-Junctional
and Electric-Field Coupling . . . . . . 1408--1424
Abdul Salam Jarrah and
Reinhard Laubenbacher and
Alan Veliz-Cuba The Dynamics of Conjunctive and
Disjunctive Boolean Network Models . . . 1425--1447
Anne Shiu and
Bernd Sturmfels Siphons in Chemical Reaction Networks 1448--1463
Rebecca J. Shipley and
S. Jonathan Chapman Multiscale Modelling of Fluid and Drug
Transport in Vascular Tumours . . . . . 1464--1491
Michael Y. Li and
Hongying Shu Global Dynamics of an In-host Viral
Model with Intracellular Delay . . . . . 1492--1505
Joseph H. Tien and
David J. D. Earn Multiple Transmission Pathways and
Disease Dynamics in a Waterborne
Pathogen Model . . . . . . . . . . . . . 1506--1533
Anna Ougrinovskaia and
Rosemary S. Thompson and
Mary R. Myerscough An ODE Model of Early Stages of
Atherosclerosis: Mechanisms of the
Inflammatory Response . . . . . . . . . 1534--1561
Guo-Wei Wei Differential Geometry Based Multiscale
Models . . . . . . . . . . . . . . . . . 1562--1622
Yeon-Jung Seo and
Shiliang Chen and
Marit Nilsen-Hamilton and
Howard A. Levine A Mathematical Analysis of
Multiple-Target SELEX . . . . . . . . . 1623--1665
Alan J. Terry and
Stephen A. Gourley Perverse Consequences of Infrequently
Culling a Pest . . . . . . . . . . . . . 1666--1695
Martin Bock and
Amit Kumar Tyagi and
Jan-Ulrich Kreft and
Wolfgang Alt Generalized Voronoi Tessellation as a
Model of Two-dimensional Cell Tissue
Dynamics . . . . . . . . . . . . . . . . 1696--1731
Marie Doumic-Jauffret and
Peter S. Kim and
Beno\^\it Perthame Stability Analysis of a Simplified Yet
Complete Model for Chronic Myelogenous
Leukemia . . . . . . . . . . . . . . . . 1732--1759
Louxin Zhang and
Jian Shen and
Jialiang Yang and
Guoliang Li Analyzing the Fitch Method for
Reconstructing Ancestral States on
Ultrametric Phylogenetic Trees . . . . . 1760--1782
Leo van Iersel and
Charles Semple and
Mike Steel Quantifying the Extent of Lateral Gene
Transfer Required to Avert a `Genome of
Eden' . . . . . . . . . . . . . . . . . 1783--1798
Nicholas S. Luke and
Michael J. DeVito and
Imran Shah and
Hisham A. El-Masri Development of a Quantitative Model of
Pregnane X Receptor (PXR) Mediated
Xenobiotic Metabolizing Enzyme Induction 1799--1819
Fabio Pardi and
Sylvain Guillemot and
Olivier Gascuel Robustness of Phylogenetic Inference
Based on Minimum Evolution . . . . . . . 1820--1839
Jay M. Newby and
Paul C. Bressloff Quasi-steady State Reduction of
Molecular Motor-Based Models of Directed
Intermittent Search . . . . . . . . . . 1840--1866
Jennifer A. Flegg and
Helen M. Byrne and
D. L. Sean McElwain Mathematical Model of Hyperbaric Oxygen
Therapy Applied to Chronic Diabetic
Wounds . . . . . . . . . . . . . . . . . 1867--1891
Dongmei Xiao and
William H. Bossert An Intra-Host Mathematical Model on
Interaction Between HIV and Malaria . . 1892--1911
A. V. Melkikh and
D. S. Bessarab Model of Active Transport of Ions
Through Diatom Cell Biomembrane . . . . 1912--1924
Sarah D. Olson and
Susan S. Suarez and
Lisa J. Fauci A Model of CatSper Channel Mediated
Calcium Dynamics in Mammalian
Spermatozoa . . . . . . . . . . . . . . 1925--1946
David F. Anderson and
Gheorghe Craciun and
Thomas G. Kurtz Product-Form Stationary Distributions
for Deficiency Zero Chemical Reaction
Networks . . . . . . . . . . . . . . . . 1947--1970
Robert M. Seymour and
Gwenan Knight and
Tak Fung Conditions for Global Dynamic Stability
of a Class of Resource-Bounded Model
Ecosystems . . . . . . . . . . . . . . . 1971--2003
Rachael L. Miller Neilan and
Elsa Schaefer and
Holly Gaff and
K. Renee Fister and
Suzanne Lenhart Modeling Optimal Intervention Strategies
for Cholera . . . . . . . . . . . . . . 2004--2018
Rajasekhar Ramakrishnan and
Janak D. Ramakrishnan A State Space Transformation Can Yield
Identifiable Models for Tracer Kinetic
Studies with Enrichment Data . . . . . . 2019--2046
Sandip Ghosal and
Zhen Chen Nonlinear Waves in Capillary
Electrophoresis . . . . . . . . . . . . 2047--2066
József Z. Farkas and
Peter Hinow Structured and Unstructured Continuous
Models for \bionameWolbachia Infections 2067--2088
Yasmine Samia and
Frithjof Lutscher Coexistence and Spread of Competitors in
Heterogeneous Landscapes . . . . . . . . 2089--2112
Sapna Nundloll and
Ludovic Mailleret and
Frédéric Grognard Influence of Intrapredatory
Interferences on Impulsive Biological
Control Efficiency . . . . . . . . . . . 2113--2138
S. Seirin Lee and
E. A. Gaffney and
N. A. M. Monk The Influence of Gene Expression Time
Delays on Gierer--Meinhardt Pattern
Formation Systems . . . . . . . . . . . 2139--2160
S. Seirin Lee and
E. A. Gaffney Aberrant Behaviours of Reaction
Diffusion Self-organisation Models on
Growing Domains in the Presence of Gene
Expression Time Delays . . . . . . . . . 2161--2179
Nicolas Bacaër and
Carel Pretorius and
Bertran Auvert An Age-Structured Model for the
Potential Impact of Generalized Access
to Antiretrovirals on the South African
HIV Epidemic . . . . . . . . . . . . . . 2180--2198
Philip K. Maini Editorial . . . . . . . . . . . . . . . 1--1
Raluca Eftimie and
Jonathan L. Bramson and
David J. D. Earn Interactions Between the Immune System
and Cancer: A Brief Review of
Non-spatial Mathematical Models . . . . 2--32
H. K. Alexander and
L. M. Wahl Self-tolerance and Autoimmunity in a
Regulatory T Cell Model . . . . . . . . 33--71
R. D. Simitev and
V. N. Biktashev Asymptotics of Conduction Velocity
Restitution in Models of Electrical
Excitation in the Heart . . . . . . . . 72--115
H. T. Banks and
Karyn L. Sutton and
W. Clayton Thompson and
Gennady Bocharov and
Dirk Roose and
Tim Schenkel and
Andreas Meyerhans Estimation of Cell Proliferation
Dynamics Using CFSE Data . . . . . . . . 116--150
Fabio Musso A Stochastic Version of the Eigen Model 151--180
Sara Jabbari and
John T. Heap and
John R. King Mathematical Modelling of the
Sporulation-Initiation Network in
\bionameBacillus subtilis Revealing the
Dual Role of the Putative Quorum-Sensing
Signal Molecule PhrA . . . . . . . . . . 181--211
N. G. Cogan and
C. W. Wolgemuth Two-Dimensional Patterns in Bacterial
Veils Arise from Self-generated,
Three-Dimensional Fluid Flows . . . . . 212--229
Raibatak Das and
Robert B. Nachbar and
Leah Edelstein-Keshet and
Jeffrey S. Saltzman and
Matthew C. Wiener and
Ansuman Bagchi and
James Bailey and
Daniel Coombs and
Adam J. Simon and
Richard J. Hargreaves and
Jacquelynn J. Cook Modeling Effect of a $ \gamma
$-Secretase Inhibitor on Amyloid-$ \beta
$ Dynamics Reveals Significant Role of
an Amyloid Clearance Mechanism . . . . . 230--247
Simone Bianco and
Leah B. Shaw Asymmetry in the Presence of Migration
Stabilizes Multistrain Disease Outbreaks 248--260
Peter beim Graben and
James Wright From McCulloch--Pitts Neurons Toward
Biology . . . . . . . . . . . . . . . . 261--265
Valentin Afraimovich and
Todd Young and
Mehmet K. Muezzino\uglu and
Mikhail I. Rabinovich Nonlinear Dynamics of Emotion-Cognition
Interaction: When Emotion Does not
Destroy Cognition? . . . . . . . . . . . 266--284
Andreas Galka and
Kin Foon Kevin Wong and
Tohru Ozaki and
Hiltrud Muhle and
Ulrich Stephani and
Michael Siniatchkin Decomposition of Neurological
Multivariate Time Series by State Space
Modelling . . . . . . . . . . . . . . . 285--324
Viktor K. Jirsa and
Roxana A. Stefanescu Neural Population Modes Capture
Biologically Realistic Large Scale
Network Dynamics . . . . . . . . . . . . 325--343
Jim W. Kay and
W. A. Phillips Coherent Infomax as a Computational Goal
for Neural Systems . . . . . . . . . . . 344--372
Eduardo Mizraji and
Juan Lin Logic in a Dynamic Brain . . . . . . . . 373--397
Moira L. Steyn-Ross and
D. A. Steyn-Ross and
J. W. Sleigh and
M. T. Wilson A Mechanism for Ultra-Slow Oscillations
in the Cortical Default Network . . . . 398--416
Minoru Tsukada and
Yasuhiro Fukushima A Context-Sensitive Mechanism in
Hippocampal CA1 Networks . . . . . . . . 417--435
J. J. Wright Attractor Dynamics and Thermodynamic
Analogies in the Cerebral Cortex:
Synchronous Oscillation, the Background
EEG, and the Regulation of Attention . . 436--457
J. J. Wright Erratum to: Attractor Dynamics and
Thermodynamic Analogies in the Cerebral
Cortex: Synchronous Oscillation, the
Background EEG, and the Regulation of
Attention . . . . . . . . . . . . . . . 458--458
Xiaohui Xie The Site-Frequency Spectrum of Linked
Sites . . . . . . . . . . . . . . . . . 459--494
Eric Forgoston and
Simone Bianco and
Leah B. Shaw and
Ira B. Schwartz Maximal Sensitive Dependence and the
Optimal Path to Epidemic Extinction . . 495--514
O. Sharomi and
C. N. Podder and
A. B. Gumel and
S. M. Mahmud and
E. Rubinstein Modelling the Transmission Dynamics and
Control of the Novel 2009 Swine
Influenza (H1N1) Pandemic . . . . . . . 515--548
Allen A. Katouli and
Natalia L. Komarova The Worst Drug Rule Revisited:
Mathematical Modeling of Cyclic Cancer
Treatments . . . . . . . . . . . . . . . 549--584
Rachel Roe-Dale and
David Isaacson and
Michael Kupferschmid A Mathematical Model of Breast Cancer
Treatment with CMF and Doxorubicin . . . 585--608
Max O. Souza and
Jorge P. Zubelli Global Stability for a Class of Virus
Models with Cytotoxic T Lymphocyte
Immune Response and Antigenic Variation 609--625
M. Wilhelm and
M. Chhetri and
J. Rychtá\vr and
O. Rueppell A Game Theoretical Analysis of the
Mating Sign Behavior in the Honey Bee 626--638
Farida Chamchod and
Nicholas F. Britton Analysis of a Vector-Bias Model on
Malaria Transmission . . . . . . . . . . 639--657
Hasan Coskun and
Huseyin Coskun Cell Physician: Reading Cell Motion . . 658--682
M. Broom and
J. Rychtá\vr Kleptoparasitic Melees --- Modelling
Food Stealing Featuring Contests with
Multiple Individuals . . . . . . . . . . 683--699
Reinhard Laubenbacher Algebraic Methods in Mathematical
Biology . . . . . . . . . . . . . . . . 701--705
Florian Blöchl and
Dominik M. Wittmann and
Fabian J. Theis Effective Parameters Determining the
Information Flow in Hierarchical
Biological Systems . . . . . . . . . . . 706--725
Miklós Bóna and
Meera Sitharam and
Andrew Vince Enumeration of Viral Capsid Assembly
Pathways: Tree Orbits Under Permutation
Group Action . . . . . . . . . . . . . . 726--753
Valerie Hower and
Christine E. Heitsch Parametric Analysis of RNA Branching
Configurations . . . . . . . . . . . . . 754--776
Chris McCaig and
Mike Begon and
Rachel Norman and
Carron Shankland A Symbolic Investigation of
Superspreaders . . . . . . . . . . . . . 777--794
Anna-Sapfo Malaspinas and
Nicholas Eriksson and
Peter Huggins Parametric Analysis of Alignment and
Phylogenetic Uncertainty . . . . . . . . 795--810
Alicia Dickenstein and
Mercedes Pérez Millán How Far is Complex Balancing from
Detailed Balancing? . . . . . . . . . . 811--828
Raazesh Sainudiin and
Kevin Thornton and
Jennifer Harlow and
James Booth and
Michael Stillman and
Ruriko Yoshida and
Robert Griffiths and
Gil McVean and
Peter Donnelly Experiments with the Site Frequency
Spectrum . . . . . . . . . . . . . . . . 829--872
Heike Siebert Analysis of Discrete Bioregulatory
Networks Using Symbolic Steady States 873--898
Andreas Weber and
Thomas Sturm and
Essam O. Abdel-Rahman Algorithmic Global Criteria for
Excluding Oscillations . . . . . . . . . 899--916
Ezio Venturino Simple Metaecoepidemic Models . . . . . 917--950
G. Pfuhl and
H. Tjelmeland and
R. Biegler Precision and Reliability in Animal
Navigation . . . . . . . . . . . . . . . 951--977
Fabian J. Theis and
Sebastian Bohl and
Ursula Klingmüller Theoretical Analysis of Time-to-Peak
Responses in Biological Reaction
Networks . . . . . . . . . . . . . . . . 978--1003
Asbjorn Christensen and
Ken Haste Andersen General Classification of Maturation
Reaction-Norm Shape from Size-based
Processes . . . . . . . . . . . . . . . 1004--1027
Geoff Wild Inclusive Fitness from Multitype
Branching Processes . . . . . . . . . . 1028--1051
C. A. Cobbold and
J. A. Powell Evolution Stabilises the Synchronising
Dynamics of Poikilotherm Life Cycles . . 1052--1081
Dana Paquin and
Peter S. Kim and
Peter P. Lee and
Doron Levy Strategic Treatment Interruptions During
Imatinib Treatment of Chronic
Myelogenous Leukemia . . . . . . . . . . 1082--1100
Orit Lavi and
Eyal Klement and
Yoram Louzoun Effect of Vaccination in Environmentally
Induced Diseases . . . . . . . . . . . . 1101--1117
Faustino Sánchez-Garduño and
Víctor F. Breña-Medina Searching for Spatial Patterns in a
Pollinator--Plant--Herbivore
Mathematical Model . . . . . . . . . . . 1118--1153
Andy Hoyle and
Roger G. Bowers and
Andy White Evolutionary Behaviour, Trade-Offs and
Cyclic and Chaotic Population Dynamics 1154--1169
E. Aydemir and
C. J. W. Breward and
T. P. Witelski The Effect of Polar Lipids on Tear Film
Dynamics . . . . . . . . . . . . . . . . 1171--1201
María Angélica Cueto and
Frederick A. Matsen Polyhedral Geometry of Phylogenetic
Rogue Taxa . . . . . . . . . . . . . . . 1202--1226
Lee Altenberg An Evolutionary Reduction Principle for
Mutation Rates at Multiple Loci . . . . 1227--1270
Donald A. Drew and
Gretchen A. Koch and
Shannon Hitchcock and
Jill Kowalski and
Ronak Talati and
Vera Valakh A Mathematical Model for Timing the
Release from Sequestration and the
Resultant Brownian Migration of SeqA
Clusters in \bionameE. coli . . . . . . 1271--1291
Wondimu Teka and
Krasimira Tsaneva-Atanasova and
Richard Bertram and
Joël Tabak From Plateau to Pseudo-Plateau Bursting:
Making the Transition . . . . . . . . . 1292--1311
Hanna T. M. Eskola and
Stefan A. H. Geritz and
Mats Gyllenberg On the Evolution of the Timing of
Reproduction with Non-equilibrium
Resident Dynamics . . . . . . . . . . . 1312--1332
C. P. Bhunu and
S. Mushayabasa and
J. M. Tchuenche A Theoretical Assessment of the Effects
of Smoking on the Transmission Dynamics
of Tuberculosis . . . . . . . . . . . . 1333--1357
Eliezer Gurarie and
Daniel Grünbaum and
Michael T. Nishizaki Estimating $3$D Movements from $2$D
Observations Using a Continuous Model of
Helical Swimming . . . . . . . . . . . . 1358--1377
Eduardo González-Olivares and
Alejandro Rojas-Palma Multiple Limit Cycles in a Gause Type
Predator--Prey Model with Holling Type
III Functional Response and Allee Effect
on Prey . . . . . . . . . . . . . . . . 1378--1397
Juanjuan Chai and
Elizabeth Ann Housworth On the Number of Binary Characters
Needed to Recover a Phylogeny Using
Maximum Parsimony . . . . . . . . . . . 1398--1411
Christopher M. Kribs-Zaleta and
Jean-François Jusot and
Philippe Vanhems and
Sandrine Charles Modeling Nosocomial Transmission of
Rotavirus in Pediatric Wards . . . . . . 1413--1442
Marco V. José and
Eberto R. Morgado and
Tzipe Govezensky Genetic Hotels for the Standard Genetic
Code: Evolutionary Analysis Based upon
Novel Three-Dimensional Algebraic Models 1443--1476
Gilles Didier Parametric Maximum Parsimonious
Reconstruction on Trees . . . . . . . . 1477--1502
David Schley and
John Ward and
Zhidong Zhang Modelling Foot-and-Mouth Disease Virus
Dynamics in Oral Epithelium to Help
Identify the Determinants of Lysis . . . 1503--1528
J. M. Bloomfield and
K. J. Painter and
J. A. Sherratt How Does Cellular Contact Affect
Differentiation Mediated Pattern
Formation? . . . . . . . . . . . . . . . 1529--1558
Bernd Gotzen and
Volkmar Liebscher and
Sebastian Walcher On a Class of Deterministic Population
Models with Stochastic Foundation . . . 1559--1582
Franziska Hinkelmann and
David Murrugarra and
Abdul Salam Jarrah and
Reinhard Laubenbacher A Mathematical Framework for Agent Based
Models of Complex Biological Networks 1583--1602
J. C. Dallon and
Brittany Dalton and
Chelsea Malani Understanding Streaming in
\bionameDictyostelium discoideum: Theory
Versus Experiments . . . . . . . . . . . 1603--1626
Elchanan Mossel and
Sébastien Roch and
Allan Sly On the Inference of Large Phylogenies
with Long Branches: How Long Is Too
Long? . . . . . . . . . . . . . . . . . 1627--1644
Peter S. Kim and
Peter P. Lee and
Doron Levy A Theory of Immunodominance and Adaptive
Regulation . . . . . . . . . . . . . . . 1645--1665
M. Björklund and
E. Ranta and
V. Kaitala and
L. A. Bach and
P. Lundberg Environmental Fluctuations and Level of
Density-Compensation Strongly Affects
the Probability of Fixation and Fixation
Times . . . . . . . . . . . . . . . . . 1666--1681
Huaxiong Huang and
Jonathan J. Wylie and
Robert M. Miura Restricted Diffusion in Cellular Media:
$ (1 + 1)$-Dimensional Model . . . . . . 1682--1694
Chuan Xue and
Hyung Ju Hwang and
Kevin J. Painter and
Radek Erban Travelling Waves in Hyperbolic
Chemotaxis Equations . . . . . . . . . . 1695--1733
Maria Pia Saccomani An Effective Automatic Procedure for
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HIV/AIDS Models . . . . . . . . . . . . 1734--1753
Giao T. Huynh and
Frederick R. Adler Alternating Host Cell Tropism Shapes the
Persistence, Evolution and Coexistence
of Epstein--Barr Virus Infections in
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Michael Y. Li and
Hongying Shu Multiple Stable Periodic Oscillations in
a Mathematical Model of CTL Response to
HTLV-I Infection . . . . . . . . . . . . 1774--1793
Rongsong Liu and
Carlos Martinez del Rio and
Jianhong Wu Spatiotemporal Variation of Mistletoes:
a Dynamic Modeling Approach . . . . . . 1794--1811
Luiz Alberto Díaz Rodrigues and
Diomar Cristina Mistro and
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Themistoklis Sapsis and
Jifeng Peng and
George Haller Instabilities on Prey Dynamics in
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J. M. Davis and
C. Pozrikidis Numerical Simulation of Unsteady Blood
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Edgar Delgado-Eckert and
Samuel Ojosnegros and
Niko Beerenwinkel The Evolution of Virulence in RNA
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Robert M. Goor and
Lisa Forman Neall and
Douglas Hoffman and
Stephen T. Sherry A Mathematical Approach to the Analysis
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Iddo Ben-Ari and
Khalid Boushaba and
Anastasios Matzavinos and
Alexander Roitershtein Stochastic Analysis of the Motion of DNA
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S. Murat Sen and
E. Zerrin Bagci and
Mehmet C. Camurdan Bistability Analysis of an Apoptosis
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Meng Liu and
Ke Wang and
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Exclusion Principle . . . . . . . . . . 1969--2012
Alexander N. Gorban and
Lyudmila I. Pokidysheva and
Elena V. Smirnova and
Tatiana A. Tyukina Law of the Minimum Paradoxes . . . . . . 2013--2044
Dino G. Salinas and
Juan G. Reyes and
Milton De La Fuente Lipid Metabolizing Enzyme Activities
Modulated by Phospholipid Substrate
Lateral Distribution . . . . . . . . . . 2045--2067
Christian Hilbe Local Replicator Dynamics: a Simple Link
Between Deterministic and Stochastic
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Martha J. Garlick and
James A. Powell and
Mevin B. Hooten and
Leslie R. McFarlane Homogenization of Large-Scale Movement
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Max R. Bennett and
Les Farnell and
William G. Gibson A Model of NMDA Receptor Control of
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Jay L. Michaels and
Vincent Naudot and
Larry S. Liebovitch Dynamic Stabilization in the PU1-GATA1
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Mark F. Schumaker and
David M. Kramer Comparison of Monte Carlo Simulations of
Cytochrome b$_6$ f with Experiment Using
Latin Hypercube Sampling . . . . . . . . 2152--2174
Andrea Schnepf and
Davey Jones and
Tiina Roose Modelling Nutrient Uptake by Individual
Hyphae of Arbuscular Mycorrhizal Fungi:
Temporal and Spatial Scales for an
Experimental Design . . . . . . . . . . 2175--2200
Reed A. Cartwright Bards, Poets, and Cliques:
Frequency-Dependent Selection and the
Evolution of Language Genes . . . . . . 2201--2212
Isaac Klapper and
Barbara Szomolay An Exclusion Principle and the
Importance of Mobility for a Class of
Biofilm Models . . . . . . . . . . . . . 2213--2230
Jacek Mi\kekisz and
Jan Poleszczuk and
Marek Bodnar and
Urszula Fory\'s Stochastic Models of Gene Expression
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P. D. N. Srinivasu and
B. S. R. V. Prasad Role of Quantity of Additional Food to
Predators as a Control in Predator--Prey
Systems with Relevance to Pest
Management and Biological Conservation 2249--2276
Maya Mincheva Oscillations in Biochemical Reaction
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Viggo Andreasen The Final Size of an Epidemic and Its
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Stephen J. Willson Restricted Trees: Simplifying Networks
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Sharon Bewick and
Jing Wu and
Scott C. Lenaghan and
Ruoting Yang and
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William Hamel The R5 to X4 Coreceptor Switch: a
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Don A. Jones and
Hal L. Smith Bacteriophage and Bacteria in a Flow
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Yijun Lou and
Xiao-Qiang Zhao Modelling Malaria Control by
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Taesoo Jang and
Hee-Dae Kwon and
Jeehyun Lee Free Terminal Time Optimal Control
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M. Aubert and
M. A. J. Chaplain and
S. R. McDougall and
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Arjun Krishnan and
Bogdan I. Epureanu Renewal-Reward Process Formulation of
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Manoj Gopalakrishnan and
Bindu S. Govindan A First-Passage-Time Theory for Search
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Microtubules in Mitosis . . . . . . . . 2483--2506
D. E. Postnov and
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N.-H. Holstein-Rathlou and
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S. Seirin Lee and
E. A. Gaffney and
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J. Chaffee and
R. Kuske The Effect of Loss of Immunity on
Noise-Induced Sustained Oscillations in
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Lauren M. Childs and
Michael Paskow and
Sidney M. Morris, Jr. and
Matthias Hesse and
Steven Strogatz From Inflammation to Wound Healing:
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Functional Versatility of Murine
Macrophages . . . . . . . . . . . . . . 2575--2604
Kalle Parvinen Adaptive Dynamics of Altruistic
Cooperation in a Metapopulation:
Evolutionary Emergence of Cooperators
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David C. Haws and
Terrell L. Hodge and
Ruriko Yoshida Optimality of the Neighbor Joining
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T. Lemaire and
E. Capiez-Lernout and
J. Kaiser and
S. Naili and
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V. Sansalone A Multiscale Theoretical Investigation
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Moritz Lang and
Tatiana T. Marquez-Lago and
Jörg Stelling and
Steffen Waldherr Autonomous Synchronization of Chemically
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S. M. Moore and
C. A. Manore and
V. A. Bokil and
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P. R. Hosseini Spatiotemporal Model of Barley and
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Roberto C. Sotero and
Yasser Iturria-Medina From Blood Oxygenation Level Dependent
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Chad R. Wells and
Jean M. Tchuenche and
Lauren Ancel Meyers and
Alison P. Galvani and
Chris T. Bauch Impact of Imitation Processes on the
Effectiveness of Ring Vaccination . . . 2748--2772
Wei Yao and
Huaxiong Huang and
Robert M. Miura A Continuum Neuronal Model for the
Instigation and Propagation of Cortical
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Jeremy J. Thibodeaux and
Timothy P. Schlittenhardt Optimal Treatment Strategies for Malaria
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Atilla Sit and
Zhijun Wu Solving a Generalized Distance Geometry
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Yanthe E. Pearson and
Emilio Castronovo and
Tara A. Lindsley and
Donald A. Drew Mathematical Modeling of Axonal
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Amina Eladdadi and
David Isaacson A Mathematical Model for the Effects of
HER2 Over-Expression on Cell Cycle
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S. D. Hove-Musekwa and
F. Nyabadza and
H. Mambili-Mamboundou Modelling Hospitalization, Home-Based
Care, and Individual Withdrawal for
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Claudia P. Ferreira and
Roberto A. Kraenkel The Role of Immunity and Seasonality in
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Raluca Eftimie and
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Byram W. Bridle and
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David J. D. Earn Multi-Stability and Multi-Instability
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Manoj Gopalkrishnan Catalysis in Reaction Networks . . . . . 2962--2982
Ivana Drobnjak and
A. C. Fowler A Model of Oscillatory Blood Cell Counts
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Michael Y. Li and
Aaron G. Lim Modelling the Role of Tax Expression in
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Guang Hu and
Ze Wang and
Wen-Yuan Qiu Topological Analysis of Enzymatic
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David E. Hiebeler and
Isaac J. Michaud and
Hamilton Hoxie Ackerman and
Shannon Reed Iosevich and
Andre Robinson Multigeneration Reproduction Ratios and
the Effects of Clustered Unvaccinated
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Paul E. Hand and
Boyce E. Griffith Empirical Study of an Adaptive
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Y. Kang and
N. Lanchier The Role of Space in the Exploitation of
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Elisenda Feliu and
Michael Knudsen and
Lars N. Andersen and
Carsten Wiuf An Algebraic Approach to Signaling
Cascades with $n$ Layers . . . . . . . . 45--72
Yeonok Lee and
Hulin Wu MARS Approach for Global Sensitivity
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with Applications to Dynamics of
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Amanda Galante and
Koji Tamada and
Doron Levy B7--H1 and a Mathematical Model for
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Fabio Musso On the Relation Between the Eigen Model
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Aboudramane Guiro and
Abderrahman Iggidr and
Di\`ene Ngom On the Stock Estimation for a Harvested
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Charles D. Maggio and
Scott R. Jennings and
Jennifer L. Robichaux and
Peter C. Stapor and
James M. Hyman A Modified Hai--Murphy Model of Uterine
Smooth Muscle Contraction . . . . . . . 143--158
Rachel Roe-Dale and
David Isaacson and
Michael Kupferschmid A Mathematical Model of Cell Cycle
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William Floyd and
Leslie Kay and
Michael Shapiro A Covering--Graph Approach to Epidemics
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Flor A. Espinoza and
Janet M. Oliver and
Bridget S. Wilson and
Stanly L. Steinberg Using Hierarchical Clustering and
Dendrograms to Quantify the Clustering
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John A. Rhodes and
Seth Sullivant Identifiability of Large Phylogenetic
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Stephen O'Malley and
Martin A. Bees The Orientation of Swimming
Biflagellates in Shear Flows . . . . . . 232--255
Richard Gejji and
Yuan Lou and
Daniel Munther and
Justin Peyton Evolutionary Convergence to Ideal Free
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Hongyu Miao and
Xia Jin and
Alan S. Perelson and
Hulin Wu Evaluation of Multitype Mathematical
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Lai Zhang and
Zhigui Lin and
Michael Pedersen Effects of Growth Curve Plasticity on
Size-Structured Population Dynamics . . 327--345
Zhen Chen and
Sandip Ghosal Electromigration Dispersion in Capillary
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W. P. Kelly and
M. P. H. Stumpf Assessing Coverage of Protein
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Qiwen Sun and
Moxun Tang and
Jianshe Yu Temporal Profile of Gene Transcription
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Drew Fudenberg and
Lorens A. Imhof Phenotype Switching and Mutations in
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Lori Layne and
Elena Dimitrova and
Matthew Macauley Nested Canalyzing Depth and Network
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Wen-Yong Hu and
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Yuan-Zhi Shao In Silico Synergism and Antagonism of an
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a Mathematical Modelling Approach . . . 434--452
Jimmy Garnier and
Lionel Roques and
François Hamel Success rate of a biological invasion in
terms of the spatial distribution of the
founding population . . . . . . . . . . 453--473
Benjamin J. Binder and
Kerry A. Landman and
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Johanna E. Simkin and
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Dongcheng Zhang Spatial Analysis of Multi-species
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Suzanne L. Robertson and
J. M. Cushing and
R. F. Costantino Life Stages: Interactions and Spatial
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Sivan Leviyang Sampling HIV Intrahost Genealogies Based
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Cameron J. Browne and
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Carina Curto and
Anda Degeratu and
Vladimir Itskov Flexible Memory Networks . . . . . . . . 590--614
William S. C. Gurney and
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Azmy S. Ackleh and
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Keng Deng and
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Tilmann Glimm and
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Jason N. Bazil and
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Ann E. Rundell A Global Parallel Model Based Design of
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Max R. Bennett and
Les Farnell and
William G. Gibson A Model of Neuregulin Control of NMDA
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Kate Simms and
Nigel Bean and
Adrian Koerber A Mathematical Model of Cell Cycle
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R. E. Lee DeVille and
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Bonni J. Kealy and
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Joshua H. Smith and
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Rafael Peña-Miller and
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Sunmi Lee and
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Angela Cheer and
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Alma Ma\vsi\'c and
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Masahiro Anazawa Interspecific Competition Models Derived
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Kevin L. S. Drury and
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Yasmine Samia and
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Grzegorz A. Rempala Least Squares Estimation in Stochastic
Biochemical Networks . . . . . . . . . . 1938--1955
Joaquin Zabalo Permanence in an Intraguild Predation
Model with Prey Switching . . . . . . . 1957--1984
Zoë Ward and
Jane White Impact of Latently Infected Cells on
Strain Archiving Within HIV Hosts . . . 1985--2003
M. W. Adamson and
A. Y. Morozov Revising the Role of Species Mobility in
Maintaining Biodiversity in Communities
with Cyclic Competition . . . . . . . . 2004--2031
Laurie Crossley and
Caroline A. Garrett and
Majid Hafezparast and
Anotida Madzvamuse From the Cell Membrane to the Nucleus:
Unearthing Transport Mechanisms for
Dynein . . . . . . . . . . . . . . . . . 2032--2061
V. S. Zubkov and
C. J. W. Breward and
E. A. Gaffney Coupling Fluid and Solute Dynamics
Within the Ocular Surface Tear Film: a
Modelling Study of Black Line Osmolarity 2062--2093
N. J. Malunguza and
S. D. Hove-Musekwa and
G. Musuka and
Z. Mukandavire Investigating Alcohol Consumption as a
Risk Factor for HIV Transmission in
Heterosexual Settings in Sub-Saharan
African Communities . . . . . . . . . . 2094--2124
Joel C. Miller A Note on the Derivation of Epidemic
Final Sizes . . . . . . . . . . . . . . 2125--2141
Yuanshi Wang and
Donald L. DeAngelis and
J. Nathaniel Holland Uni-directional Interaction and
Plant--Pollinator--Robber Coexistence 2142--2164
Rebecca A. Segal and
Robert F. Diegelmann and
Kevin R. Ward and
Angela Reynolds A Differential Equation Model of
Collagen Accumulation in a Healing Wound 2165--2182
Peter Rashkov and
Bernhard A. Schmitt and
Lotte Sògaard-Andersen and
Peter Lenz and
Stephan Dahlke A Model of Oscillatory Protein Dynamics
in Bacteria . . . . . . . . . . . . . . 2183--2203
A. A. Al-Shammari and
E. A. Gaffney and
S. Egginton Re-evaluating the Use of Voronoi
Tessellations in the Assessment of
Oxygen Supply from Capillaries in Muscle 2204--2231
James A. Powell and
Brynja R. Kohler and
James W. Haefner and
Janice Bodily Carrying BioMath Education in a Leaky
Bucket . . . . . . . . . . . . . . . . . 2232--2264
Hans Meinhardt No Oscillations in Real
Activator--Inhibitor Systems in
Accomplishing Pattern Formation . . . . 2265--2267
Eamonn A. Gaffney and
Nick A. M. Monk and
Ruth E. Baker and
S. Seirin Lee Reply to Correspondence: No Oscillations
in Real Activator--Inhibitor Systems in
Accomplishing Pattern Formation . . . . 2268--2271
S. R. McDougall and
M. G. Watson and
A. H. Devlin and
C. A. Mitchell and
M. A. J. Chaplain A Hybrid Discrete--Continuum
Mathematical Model of Pattern Prediction
in the Developing Retinal Vasculature 2272--2314
Stuart Nattrass and
Stephen Baigent and
David J. Murrell Quantifying the Likelihood of
Co-existence for Communities with
Asymmetric Competition . . . . . . . . . 2315--2338
Xiangrong Xin and
Hans G. Othmer A ``Trimer of Dimers''-Based Model for
the Chemotactic Signal Transduction
Network in Bacterial Chemotaxis . . . . 2339--2382
Mark A. Lewis and
Bingtuan Li Spreading Speed, Traveling Waves, and
Minimal Domain Size in Impulsive
Reaction--Diffusion Models . . . . . . . 2383--2402
Yanni Xiao and
Xiaxia Xu and
Sanyi Tang Sliding Mode Control of Outbreaks of
Emerging Infectious Diseases . . . . . . 2403--2422
Zhisheng Shuai and
Joseph H. Tien and
P. van den Driessche Cholera Models with Hyperinfectivity and
Temporary Immunity . . . . . . . . . . . 2423--2445
Yongfeng Li and
Scott C. Lenaghan and
Mingjun Zhang Nonlinear Dynamics of the Movement of
the Venus Flytrap . . . . . . . . . . . 2446--2473
Menachem Lachiany and
Lewi Stone A Vaccination Model for a Multi-City
System . . . . . . . . . . . . . . . . . 2474--2487
Konstantin B. Blyuss and
Yuliya N. Kyrychko Symmetry Breaking in a Model of
Antigenic Variation with Immune Delay 2488--2509
Liene Daukste and
Britta Basse and
Bruce C. Baguley and
David J. N. Wall Mathematical Determination of Cell
Population Doubling Times for Multiple
Cell Lines . . . . . . . . . . . . . . . 2510--2534
Evangelos Bakalis and
Marios Kosmas and
Emmanouel M. Papamichael Perturbation Theory in the Catalytic
Rate Constant of the
Henri--Michaelis--Menten Enzymatic
Reaction . . . . . . . . . . . . . . . . 2535--2546
Christina L. Hamlet and
Laura A. Miller Feeding Currents of the Upside Down
Jellyfish in the Presence of Background
Flow . . . . . . . . . . . . . . . . . . 2547--2569
Georg R. Walther and
Athanasius F. M. Marée and
Leah Edelstein-Keshet and
Verônica A. Grieneisen Deterministic Versus Stochastic Cell
Polarisation Through Wave-Pinning . . . 2570--2599
R. C. Fetecau and
A. Guo A Mathematical Model for Flight Guidance
in Honeybee Swarms . . . . . . . . . . . 2600--2621
Kalle Parvinen and
Anne Seppänen and
John D. Nagy Evolution of Complex Density-Dependent
Dispersal Strategies . . . . . . . . . . 2622--2649
Benjamin Allen and
Daniel I. Scholes Rosenbloom Mutation Rate Evolution in Replicator
Dynamics . . . . . . . . . . . . . . . . 2650--2675
József Garay and
Tamás F. Móri Monogamy Has a Fixation Advantage Based
on Fitness Variance in an Ideal
Promiscuity Group . . . . . . . . . . . 2676--2691
J. Hasenauer and
D. Schittler and
F. Allgöwer Analysis and Simulation of Division- and
Label-Structured Population Models . . . 2692--2732
Samira Akbari and
Naveen K. Vaidya and
Lindi M. Wahl The Time Distribution of
Sulfadoxine--Pyrimethamine Protection
from Malaria . . . . . . . . . . . . . . 2733--2751
Duan Chen and
Julie M. Roda and
Clay B. Marsh and
Timothy D. Eubank and
Avner Friedman Hypoxia Inducible Factors-Mediated
Inhibition of Cancer by GM--CSF: a
Mathematical Model . . . . . . . . . . . 2752--2777
Alan Veliz-Cuba and
Joseph Arthur and
Laura Hochstetler and
Victoria Klomps and
Erikka Korpi On the Relationship of Steady States of
Continuous and Discrete Models Arising
from Biology . . . . . . . . . . . . . . 2779--2792
Robin N. Thompson and
Christian A. Yates and
Ruth E. Baker Modelling Cell Migration and Adhesion
During Development . . . . . . . . . . . 2793--2809
Subhra Bhattacharya and
Frederick R. Adler A Time Since Recovery Model with Varying
Rates of Loss of Immunity . . . . . . . 2810--2819
D. D. Postnov and
D. E. Postnov and
D. J. Marsh and
N.-H. Holstein-Rathlou and
O. V. Sosnovtseva Dynamics of Nephron--Vascular Network 2820--2841
M. Bodin and
Å. Brännström and
U. Dieckmann A Systematic Overview of
Harvesting-Induced Maturation Evolution
in Predator--Prey Systems with Three
Different Life-History Tradeoffs . . . . 2842--2860
Aditya P. Singh and
Erik Andries and
Jeremy S. Edwards and
Stanly Steinberg The Shuttling Scaffold Model for
Prevention of Yeast Pheromone Pathway
Misactivation . . . . . . . . . . . . . 2861--2874
Alicia Martínez-González and
Gabriel F. Calvo and
Luis A. Pérez Romasanta and
Víctor M. Pérez-García Hypoxic Cell Waves Around Necrotic Cores
in Glioblastoma: a Biomathematical Model
and Its Therapeutic Implications . . . . 2875--2896
Yi Wei and
Alexei A. Koulakov An Exactly Solvable Model of Random
Site-Specific Recombinations . . . . . . 2897--2916
Isaac Klapper Productivity and Equilibrium in Simple
Biofilm Models . . . . . . . . . . . . . 2917--2934
Olga Vasilyeva and
Frithjof Lutscher How Flow Speed Alters Competitive
Outcome in Advective Environments . . . 2935--2958
Xinzhu Meng and
Niklas L. P. Lundström and
Mats Bodin and
Åke Brännström Dynamics and Management of
Stage-Structured Fish Stocks . . . . . . 1--23
Farai Nyabadza and
John B. H. Njagarah and
Robert J. Smith Modelling the Dynamics of Crystal Meth
(`Tik') Abuse in the Presence of
Drug-Supply Chains in South Africa . . . 24--48
Charles Heppell and
Giles Richardson and
Tiina Roose A Model for Fluid Drainage by the
Lymphatic System . . . . . . . . . . . . 49--81
Marcos Amaku and
Francisco Antonio Bezerra Coutinho and
Eleazar Chaib and
Eduardo Massad The Impact of Hepatitis A Virus
Infection on Hepatitis C Virus
Infection: a Competitive Exclusion
Hypothesis . . . . . . . . . . . . . . . 82--93
N. G. Cogan and
Barbara Szomolay and
Martin Dindos Effect of Periodic Disinfection on
Persisters in a One-Dimensional Biofilm
Model . . . . . . . . . . . . . . . . . 94--123
Jun-Koo Park and
Robert Jernigan and
Zhijun Wu Coarse Grained Normal Mode Analysis vs.
Refined Gaussian Network Model for
Protein Residue-Level Structural
Fluctuations . . . . . . . . . . . . . . 124--160
Thomas Hillen and
Heiko Enderling and
Philip Hahnfeldt The Tumor Growth Paradox and Immune
System-Mediated Selection for Cancer
Stem Cells . . . . . . . . . . . . . . . 161--184
Cliburn Chan and
Matthew Billard and
Samuel A. Ramirez and
Harald Schmidl and
Eric Monson and
Thomas B. Kepler A Model for Migratory B Cell
Oscillations from Receptor
Down-Regulation Induced by External
Chemokine Fields . . . . . . . . . . . . 185--205
Juan Zhang and
Zhen Jin and
Gui-Quan Sun and
Xiang-Dong Sun and
Shigui Ruan Erratum to: Modeling Seasonal Rabies
Epidemics in China . . . . . . . . . . . 206--211
Sa Xiao and
Liang Zhao and
Jia-Lin Zhang and
Xiang-Tai Wang and
Shu-Yan Chen Comparing Neutral and Trade-off
Community Models in Shaping the
Community Biomass--Diversity
Relationship Under Different Disturbance
Levels . . . . . . . . . . . . . . . . . 213--222
Brad Weir and
Robert N. Miller and
Yvette H. Spitz Implicit Estimation of Ecological Model
Parameters . . . . . . . . . . . . . . . 223--257
Lud\vek Berec and
Daniel Maxin Fatal or Harmless: Extreme Bistability
Induced by Sterilizing, Sexually
Transmitted Pathogens . . . . . . . . . 258--273
Gaiping Zhao and
Wentao Yan and
Eryun Chen and
Xiaoli Yu and
Wenjie Cai Numerical Simulation of the Inhibitory
Effect of Angiostatin on Metastatic
Tumor Angiogenesis and Microenvironment 274--287
Rachele Allena Cell Migration with Multiple
Pseudopodia: Temporal and Spatial
Sensing Models . . . . . . . . . . . . . 288--316
Jacek Mi\kekisz and
Paulina Szyma\'nska Gene Expression in Self-repressing
System with Multiple Gene Copies . . . . 317--330
Ashish Saini and
Jingyu Hou Progressive Clustering Based Method for
Protein Function Prediction . . . . . . 331--350
Pavol Bokes and
John R. King and
Andrew T. A. Wood and
Matthew Loose Transcriptional Bursting Diversifies the
Behaviour of a Toggle Switch: Hybrid
Simulation of Stochastic Gene Expression 351--371
A. Zakharova and
Z. Nikoloski and
A. Koseska Dimensionality Reduction of Bistable
Biological Systems . . . . . . . . . . . 373--392
J. V. Pohlmeyer and
S. L. Waters and
L. J. Cummings Mathematical Model of Growth Factor
Driven Haptotaxis and Proliferation in a
Tissue Engineering Scaffold . . . . . . 393--427
James Hadfield and
Michael J. Plank and
Tim David Modeling Secondary Messenger Pathways in
Neurovascular Coupling . . . . . . . . . 428--443
Katharina T. Huber and
Andrei-Alin Popescu Lassoing and Corralling Rooted
Phylogenetic Trees . . . . . . . . . . . 444--465
Prapanporn Rattana and
Konstantin B. Blyuss and
Ken T. D. Eames and
Istvan Z. Kiss A Class of Pairwise Models for Epidemic
Dynamics on Weighted Networks . . . . . 466--490
Courtney L. Davis and
Frederick R. Adler Mathematical Models of Memory CD8$^+$
T-Cell Repertoire Dynamics in Response
to Viral Infections . . . . . . . . . . 491--522
Daozhou Gao and
Chris Cosner and
Robert Stephen Cantrell and
John C. Beier and
Shigui Ruan Modeling the Spatial Spread of Rift
Valley Fever in Egypt . . . . . . . . . 523--542
Zhen Wang and
Xiao-Qiang Zhao A Within-Host Virus Model with Periodic
Multidrug Therapy . . . . . . . . . . . 543--563
Irina Kareva and
Benjamin Morin and
Georgy Karev Preventing the Tragedy of the Commons
Through Punishment of Over-Consumers and
Encouragement of Under-Consumers . . . . 565--588
Robert A. Gatenby and
B. Roy Frieden The Critical Roles of Information and
Nonequilibrium Thermodynamics in
Evolution of Living Systems . . . . . . 589--601
Fernando Antoneli and
Francisco Bosco and
Diogo Castro and
Luiz Mario Janini Virus Replication as a Phenotypic
Version of Polynucleotide Evolution . . 602--628
Grégory Dumont and
Jacques Henry Synchronization of an Excitatory
Integrate-and-Fire Neural Network . . . 629--648
Yuqin Zhao and
Dobromir T. Dimitrov and
Hao Liu and
Yang Kuang Mathematical Insights in Evaluating
State Dependent Effectiveness of HIV
Prevention Interventions . . . . . . . . 649--675
Yasmine Tawfik and
Robert G. Owens A Mathematical and Numerical
Investigation of the Hemodynamical
Origins of Oscillations in Microvascular
Networks . . . . . . . . . . . . . . . . 676--707
Torbjörn Lundh and
Philip Gerlee Cross-Feeding Dynamics Described by a
Series Expansion of the Replicator
Equation . . . . . . . . . . . . . . . . 709--724
Youping Yang and
Yanni Xiao and
Jianhong Wu Pulse HIV Vaccination: Feasibility for
Virus Eradication and Optimal
Vaccination Schedule . . . . . . . . . . 725--751
Ashley E. Raba and
Jonathan M. Cordeiro and
Charles Antzelevitch and
Jacques Beaumont Extending the Conditions of Application
of an Inversion of the Hodgkin--Huxley
Gating Model . . . . . . . . . . . . . . 752--773
O. Stancevic and
C. N. Angstmann and
J. M. Murray and
B. I. Henry Turing Patterns from Dynamics of Early
HIV Infection . . . . . . . . . . . . . 774--795
Harriet Hughes and
N. F. Britton Modelling the Use of \bionameWolbachia
to Control Dengue Fever Transmission . . 796--818
Matan Bodaker and
Yoram Louzoun and
Eduardo Mitrani Mathematical Conditions for Induced Cell
Differentiation and
Trans-differentiation in Adult Cells . . 819--844
Eunjoo Cho and
Yong-Jung Kim Starvation Driven Diffusion as a
Survival Strategy of Biological
Organisms . . . . . . . . . . . . . . . 845--870
Matthew J. Simpson and
Benjamin J. Binder and
Parvathi Haridas and
Benjamin K. Wood and
Katrina K. Treloar and
D. L. Sean McElwain and
Ruth E. Baker Experimental and Modelling Investigation
of Monolayer Development with Clustering 871--889
Claudine Chaouiya and
Elisabeth Remy Logical Modelling of Regulatory
Networks, Methods and Applications . . . 891--895
R. Thomas Remarks on the Respective Roles of
Logical Parameters and Time Delays in
Asynchronous Logic: an Homage to El
Houssine Snoussi . . . . . . . . . . . . 896--904
R. Thomas Erratum to: Remarks on the Respective
Roles of Logical Parameters and Time
Delays in Asynchronous Logic: an Homage
to El Houssine Snoussi . . . . . . . . . 905--905
Jean-Paul Comet and
Mathilde Noual and
Adrien Richard and
Julio Aracena and
Laurence Calzone and
Jacques Demongeot and
Marcelle Kaufman and
Aurélien Naldi and
El Houssine Snoussi and
Denis Thieffry On Circuit Functionality in Boolean
Networks . . . . . . . . . . . . . . . . 906--919
Therese Lorenz and
Heike Siebert and
Alexander Bockmayr Analysis and Characterization of
Asynchronous State Transition Graphs
Using Extremal States . . . . . . . . . 920--938
Eric Goles and
Marco Montalva and
Gonzalo A. Ruz Deconstruction and Dynamical Robustness
of Regulatory Networks: Application to
the Yeast Cell Cycle Networks . . . . . 939--966
Madalena Chaves and
Etienne Farcot and
Jean-Luc Gouzé Probabilistic Approach for Predicting
Periodic Orbits in Piecewise Affine
Differential Models . . . . . . . . . . 967--987
Alex Madrahimov and
Tomá\vs Helikar and
Bryan Kowal and
Guoqing Lu and
Jim Rogers Dynamics of Influenza Virus and Human
Host Interactions During Infection and
Replication Cycle . . . . . . . . . . . 988--1011
Luis Mendoza A Virtual Culture of CD4+ T Lymphocytes 1012--1029
J. R. Artalejo and
M. J. Lopez-Herrero On the Exact Measure of Disease Spread
in Stochastic Epidemic Models . . . . . 1031--1050
Britnee A. Crawford and
Christopher M. Kribs-Zaleta and
Gaik Ambartsoumian Invasion Speed in Cellular Automaton
Models for \bionameT. cruzi Vector
Migration . . . . . . . . . . . . . . . 1051--1081
Ignacio Gallo Population Genetics of Gene Function . . 1082--1103
Mohammad A. Safi and
Dessalegn Y. Melesse and
Abba B. Gumel Dynamics Analysis of a Multi-strain
Cholera Model with an Imperfect Vaccine 1104--1137
Yuanshi Wang and
Hong Wu Invasibility of Nectarless Flowers in
Plant--Pollinator Systems . . . . . . . 1138--1156
Glenn E. Lahodny, Jr. and
Linda J. S. Allen Probability of a Disease Outbreak in
Stochastic Multipatch Epidemic Models 1157--1180
Heiko Hamann and
Istvan Karsai and
Thomas Schmickl Time Delay Implies Cost on Task
Switching: a Model to Investigate the
Efficiency of Task Partitioning . . . . 1181--1206
Sze-Bi Hsu and
Chiu-Ju Lin and
Chih-Hao Hsieh and
Kohei Yoshiyama Dynamics of Phytoplankton Communities
Under Photoinhibition . . . . . . . . . 1207--1232
Mark Alber and
Philip K. Maini and
Glen Niebur Biomedical Modeling: The Role of
Transport and Mechanics . . . . . . . . 1233--1237
Mark S. Thompson Tendon Mechanobiology: Experimental
Models Require Mathematical Underpinning 1238--1254
Karin Leiderman and
Aaron L. Fogelson The Influence of Hindered Transport on
the Development of Platelet Thrombi
Under Flow . . . . . . . . . . . . . . . 1255--1283
P. P. Weafer and
W. Ronan and
S. P. Jarvis and
J. P. McGarry Experimental and Computational
Investigation of the Role of Stress
Fiber Contractility in the Resistance of
Osteoblasts to Compression . . . . . . . 1284--1303
Yangjin Kim and
Hans G. Othmer A Hybrid Model of Tumor--Stromal
Interactions in Breast Cancer . . . . . 1304--1350
Sergio Alonso and
Markus Bär and
Alexander V. Panfilov Negative Tension of Scroll Wave
Filaments and Turbulence in
Three-Dimensional Excitable Media and
Application in Cardiac Dynamics . . . . 1351--1376
Josephine T. Daub and
Roeland M. H. Merks A Cell-Based Model of
Extracellular-Matrix-Guided Endothelial
Cell Migration During Angiogenesis . . . 1377--1399
Yasir Suhail and
Kshitiz and
Justin Lee and
Mark Walker and
Deok-Ho Kim and
Matthew D. Brennan and
Joel S. Bader and
Andre Levchenko Modeling Intercellular Transfer of
Biomolecules Through Tunneling Nanotubes 1400--1416
Wing-Cheong Lo and
Razvan I. Arsenescu and
Avner Friedman Mathematical Model of the Roles of T
Cells in Inflammatory Bowel Disease . . 1417--1433
Lester F. Caudill, Jr. A Single-Parameter Model of the Immune
Response to Bacterial Invasion . . . . . 1434--1449
Eric Forgoston and
Ira B. Schwartz Predicting Unobserved Exposures from
Seasonal Epidemic Data . . . . . . . . . 1450--1471
A. Lamb and
G. Evans and
J. R. King Mathematical Modelling of Toxicity
Associated with Intracellular Chromium
Reduction . . . . . . . . . . . . . . . 1472--1500
Matthew H. T. Chan and
Peter S. Kim Modelling a \bionameWolbachia Invasion
Using a Slow--Fast Dispersal
Reaction--Diffusion Approach . . . . . . 1501--1523
V. S. Zubkov and
C. J. W. Breward and
E. A. Gaffney Meniscal Tear Film Fluid Dynamics Near
Marx's Line . . . . . . . . . . . . . . 1524--1543
Carlo Cattani and
Gaetano Pierro On the Fractal Geometry of DNA by the
Binary Image Analysis . . . . . . . . . 1544--1570
Carina Curto and
Vladimir Itskov and
Alan Veliz-Cuba and
Nora Youngs The Neural Ring: an Algebraic Tool for
Analyzing the Intrinsic Structure of
Neural Codes . . . . . . . . . . . . . . 1571--1611
James L. Buchanan and
Robert Gilbert and
Yvonne Ou and
Anja Nohe and
Rachel Schaefer The Kinetics of Vitamin D$_3$ in the
Osteoblastic Cell . . . . . . . . . . . 1612--1635
Alberto Saa and
Kellen M. Siqueira Modeling the ATP Production in
Mitochondria . . . . . . . . . . . . . . 1636--1651
Raffaele Basile and
Ramon Grima and
Nikola Popovi\'c A Graph-Based Approach for the
Approximate Solution of the Chemical
Master Equation . . . . . . . . . . . . 1653--1696
Lin-Fei Nie and
Zhi-Dong Teng and
Bao-Zhu Guo A State Dependent Pulse Control Strategy
for a SIRS Epidemic System . . . . . . . 1697--1715
Nancy Hernandez-Ceron and
Zhilan Feng and
Carlos Castillo-Chavez Discrete Epidemic Models with Arbitrary
Stage Distributions and Applications to
Disease Control . . . . . . . . . . . . 1716--1746
James Clarke and
K. A. Jane White and
Katy Turner Approximating Optimal Controls for
Networks when There Are Combinations of
Population-Level and Targeted Measures
Available: \bionameChlamydia Infection
as a Case-Study . . . . . . . . . . . . 1747--1777
S. Strohm and
R. C. Tyson and
J. A. Powell Pattern Formation in a Model for
Mountain Pine Beetle Dispersal: Linking
Model Predictions to Data . . . . . . . 1778--1797
H. M. Safuan and
H. S. Sidhu and
Z. Jovanoski and
I. N. Towers Impacts of Biotic Resource Enrichment on
a Predator--Prey Population . . . . . . 1798--1812
David Brown Linking Molecular and Population
Processes in Mathematical Models of
Quorum Sensing . . . . . . . . . . . . . 1813--1839
Stephen J. Willson Reconstruction of Certain Phylogenetic
Networks from Their Tree-Average
Distances . . . . . . . . . . . . . . . 1840--1878
Peter J. Humphries and
Simone Linz and
Charles Semple Cherry Picking: a Characterization of
the Temporal Hybridization Number for a
Set of Phylogenies . . . . . . . . . . . 1879--1890
Shelby Wilson and
Doron Levy Functional Switching and Stability of
Regulatory T Cells . . . . . . . . . . . 1891--1911
Robert Planqué and
Jan Bouwe van den Berg and
Nigel R. Franks The Interplay Between Scent Trails and
Group-Mass Recruitment Systems in Ants 1912--1940
Xingjiang Chen and
Karl Iremonger and
Allan Herbison and
Vivien Kirk and
James Sneyd Regulation of Electrical Bursting in a
Spatiotemporal Model of a GnRH Neuron 1941--1960
Timothy C. Reluga Equilibria of an Epidemic Game with
Piecewise Linear Social Distancing Cost 1961--1984
H. F. Winstanley and
A. C. Fowler Biomat Development in Soil Treatment
Units for On-site Wastewater Treatment 1985--2001
Sandra Kluth and
Thiemo Hustedt and
Ellen Baake The Common Ancestor Process Revisited 2003--2027
Katharina Holstein and
Dietrich Flockerzi and
Carsten Conradi Multistationarity in Sequential
Distributed Multisite Phosphorylation
Networks . . . . . . . . . . . . . . . . 2028--2058
Andrew M. Bate and
Frank M. Hilker Complex Dynamics in an
Eco-epidemiological Model . . . . . . . 2059--2078
Ingemar Nåsell The Influence of Immunity Loss on
Persistence and Recurrence of Endemic
Infections . . . . . . . . . . . . . . . 2079--2092
Samuel A. Isaacson and
Carolyn A. Larabell and
Mark A. Le Gros and
David M. McQueen and
Charles S. Peskin The Influence of Spatial Variation in
Chromatin Density Determined by X-Ray
Tomograms on the Time to Find DNA
Binding Sites . . . . . . . . . . . . . 2093--2117
Inomzhon Mirzaev and
Jeremy Gunawardena Laplacian Dynamics on General Graphs . . 2118--2149
Michael J. Plank and
Matthew J. Simpson Lattice-Free Models of Cell Invasion:
Discrete Simulations and Travelling
Waves . . . . . . . . . . . . . . . . . 2150--2166
Juhua Liang and
Sanyi Tang and
Robert A. Cheke and
Jianhong Wu Adaptive Release of Natural Enemies in a
Pest--Natural Enemy System with
Pesticide Resistance . . . . . . . . . . 2167--2195
C. Finn McQuaid and
Nicholas F. Britton Trophic Structure, Stability, and
Parasite Persistence Threshold in Food
Webs . . . . . . . . . . . . . . . . . . 2196--2207
Roxana A. Stefanescu and
R. G. Shivakeshavan and
Pramod P. Khargonekar and
Sachin S. Talathi Computational Modeling of
Channelrhodopsin-2 Photocurrent
Characteristics in Relation to Neural
Signaling . . . . . . . . . . . . . . . 2208--2240
Alex Best The Effects of Seasonal Forcing on
Invertebrate-Disease Interactions with
Immune Priming . . . . . . . . . . . . . 2241--2256
Dann G. Mallet and
Masoumeh Bagher-Oskouei and
A. Charisse Farr and
Daniel P. Simpson and
Kelly-Jean Sutton A Mathematical Model of Chlamydial
Infection Incorporating Movement of
Chlamydial Particles . . . . . . . . . . 2257--2270
Markus Daub An Appropriate Bounded Invariant Region
for a Bistable Reaction--Diffusion Model
of the Caspase--3/8 Feedback Loop . . . 2271--2288
Sylvain Soliman A Stronger Necessary Condition for the
Multistationarity of Chemical Reaction
Networks . . . . . . . . . . . . . . . . 2289--2303
Yosef Cohen and
Gonzalo Galiano Evolutionary Distributions and
Competition by Way of
Reaction--Diffusion and by Way of
Convolution . . . . . . . . . . . . . . 2305--2323
Timothy A. Lucas and
Garrett Johns and
Wancen Jiang and
Lucie Yang A Population Model of Chaparral
Vegetation Response to Frequent
Wildfires . . . . . . . . . . . . . . . 2324--2345
Wayne Nagata and
Hamid R. Z. Zangeneh and
David M. Holloway Reaction--diffusion Patterns in Plant
Tip Morphogenesis: Bifurcations on
Spherical Caps . . . . . . . . . . . . . 2346--2371
C. Finn McQuaid and
Nicholas F. Britton Network Dynamics Contribute to
Structure: Nestedness in Mutualistic
Networks . . . . . . . . . . . . . . . . 2372--2388
Ana Yun and
Soon-Hyuck Lee and
Junseok Kim A Phase-Field Model for Articular
Cartilage Regeneration in Degradable
Scaffolds . . . . . . . . . . . . . . . 2389--2409
Peter Clote and
Evangelos Kranakis and
Danny Krizanc Asymptotic Number of Hairpins of
Saturated RNA Secondary Structures . . . 2410--2430
Gregory Vey Gene Coexpression as Hebbian Learning in
Prokaryotic Genomes . . . . . . . . . . 2431--2449
J. V. Pohlmeyer and
L. J. Cummings Cyclic Loading of Growing Tissue in a
Bioreactor: Mathematical Model and
Asymptotic Analysis . . . . . . . . . . 2450--2473
Yong-Jung Kim and
Ohsang Kwon and
Fang Li Evolution of Dispersal Toward Fitness 2474--2498
Sandip Mandal and
Somdatta Sinha and
Ram Rup Sarkar A Realistic Host--Vector Transmission
Model for Describing Malaria Prevalence
Pattern . . . . . . . . . . . . . . . . 2499--2528
Alexandre Bouchard-Côté A Note on Probabilistic Models over
Strings: The Linear Algebra Approach . . 2529--2550
Ioannis Sgouralis and
Anita T. Layton Control and Modulation of Fluid Flow in
the Rat Kidney . . . . . . . . . . . . . 2551--2574
R. Allena and
D. Aubry and
J. Sharpe On the Mechanical Interplay Between
Intra- and Inter-Synchronization During
Collective Cell Migration: A Numerical
Investigation . . . . . . . . . . . . . 2575--2599
Guilherme da Costa Pereira Innocentini and
Michael Forger and
Alexandre Ferreira Ramos and
Ovidiu Radulescu and
José Eduardo Martinho Hornos Multimodality and Flexibility of
Stochastic Gene Expression . . . . . . . 2600--2630
Jonathan A. Sherratt and
Ayawoa S. Dagbovie and
Frank M. Hilker A Mathematical Biologist's Guide to
Absolute and Convective Instability . . 1--26
Alma Ma\vsi\'c and
Hermann J. Eberl A Modeling and Simulation Study of the
Role of Suspended Microbial Populations
in Nitrification in a Biofilm Reactor 27--58
Rachelle E. Miron and
Robert J. Smith Resistance to Protease Inhibitors in a
Model of HIV-1 Infection with Impulsive
Drug Effects . . . . . . . . . . . . . . 59--97
Avner Friedman and
Abdul-Aziz Yakubu A Bovine Babesiosis Model with
Dispersion . . . . . . . . . . . . . . . 98--135
Angelean O. Hendrix and
Claude L. Hughes and
James F. Selgrade Modeling Endocrine Control of the
Pituitary--Ovarian Axis: Androgenic
Influence and Chaotic Dynamics . . . . . 136--156
William R. Holmes An Efficient, Nonlinear Stability
Analysis for Detecting Pattern Formation
in Reaction Diffusion Systems . . . . . 157--183
Jürgen Jost and
Ying Wang Optimization and Phenotype Allocation 184--200
Wim Hordijk and
Peter R. Wills and
Mike Steel Autocatalytic Sets and Biological
Specificity . . . . . . . . . . . . . . 201--224
Ira Aviram and
Avinoam Rabinovitch Bactria and Lytic Phage Coexistence in a
Chemostat with Periodic Nutrient Supply 225--244
Junling Ma and
Jonathan Dushoff and
Benjamin M. Bolker and
David J. D. Earn Estimating Initial Epidemic Growth Rates 245--260
King-Yeung Lam and
Yuan Lou Evolutionarily Stable and Convergent
Stable Strategies in Reaction--Diffusion
Models for Conditional Dispersal . . . . 261--291
E. T. Camacho and
L. A. Melara and
M. C. Villalobos and
S. Wirkus Optimal Control in the Treatment of
\bionameRetinitis pigmentosa . . . . . . 292--313
Emanuel Salazar-Cavazos and
Moisés Santillán Optimal Performance of the
\bionameTryptophan operon of \bionameE.
coli: a Stochastic, Dynamical,
Mathematical-Modeling Approach . . . . . 314--334
Kang-Ling Liao and
Yuan Lou The Effect of Time Delay in a Two-Patch
Model with Random Dispersal . . . . . . 335--376
Benjamin Franz and
Chuan Xue and
Kevin J. Painter and
Radek Erban Travelling Waves in Hybrid Chemotaxis
Models . . . . . . . . . . . . . . . . . 377--400
Katja Roesch and
Dirk Hasenclever and
Markus Scholz Modelling Lymphoma Therapy and Outcome 401--430
Doug Bruce and
Pras Pathmanathan and
Jonathan P. Whiteley Modelling the Effect of Gap Junctions on
Tissue-Level Cardiac Electrophysiology 431--454
Peter Bratby and
John Montgomery and
James Sneyd A Biophysical Model of Adaptive Noise
Filtering in the Shark Brain . . . . . . 455--475
Shu-Yan Chen and
Zi-long Chen and
Peng Guo and
Chen-Chen Ding and
Yu-xin Wang and
Xiang-tai Wang and
Jia-Lin Zhang and
Peng Jia and
Gang Wang and
Sa Xiao The Roles of Spatial Pattern and Size
Variation in Shaping Height Inequality
of Plant Population . . . . . . . . . . 476--485
Taina Immonen and
Erkki Somersalo and
Daniela Calvetti Modeling HIV-1 Dynamics and Fitness in
Cell Culture Across Scales . . . . . . . 486--514
Deborah Lacitignola and
Giuseppe Saccomandi Parametric Resonance in DNA . . . . . . 515--540
Zhao Lu and
Yrjö T. Gröhn and
Rebecca L. Smith and
Jeffrey S. Karns and
Ernest Hovingh and
Ynte H. Schukken Stochastic Modeling of Imperfect
\bionameSalmonella Vaccines in an Adult
Dairy Herd . . . . . . . . . . . . . . . 541--565
S. Payvandi and
K. R. Daly and
D. L. Jones and
P. Talboys and
K. C. Zygalakis and
T. Roose A Mathematical Model of Water and
Nutrient Transport in Xylem Vessels of a
Wheat Plant . . . . . . . . . . . . . . 566--596
Vu Dinh and
Ann E. Rundell and
Gregery T. Buzzard Experimental Design for Dynamics
Identification of Cellular Processes . . 597--626
James Greene and
Orit Lavi and
Michael M. Gottesman and
Doron Levy The Impact of Cell Density and Mutations
in a Model of Multidrug Resistance in
Solid Tumors . . . . . . . . . . . . . . 627--653
José F. Fontanari and
Maurizio Serva Effect of Migration in a Diffusion Model
for Template Coexistence in Protocells 654--672
Damian Kajunguri and
John W. Hargrove and
Rachid Ouifki and
J. Y. T. Mugisha and
Paul G. Coleman and
Susan C. Welburn Modelling the Use of Insecticide-Treated
Cattle to Control Tsetse and
\bionameTrypanosoma brucei rhodesiense
in a Multi-host Population . . . . . . . 673--696
Marcos Amaku and
Francisco Antonio Bezerra Coutinho and
Silvia Martorano Raimundo and
Luis Fernandez Lopez and
Marcelo Nascimento Burattini and
Eduardo Massad A Comparative Analysis of the Relative
Efficacy of Vector-Control Strategies
Against Dengue Fever . . . . . . . . . . 697--717
Nina Embleton and
Natalia Petrovskaya A Novel Approach to Evaluation of Pest
Insect Abundance in the Presence of
Noise . . . . . . . . . . . . . . . . . 718--743
A. Ghasemi V. and
B. Firoozabadi and
M. S. Saidi Analytical Solutions of
Actin--Retrograde-Flow in a Circular
Stationary Cell: a Mechanical Point of
View . . . . . . . . . . . . . . . . . . 744--760
Radek Erban and
Hans G. Othmer Editorial: Special Issue on Stochastic
Modelling of Reaction--Diffusion
Processes in Biology . . . . . . . . . . 761--765
Marc Sturrock and
Andreas Hellander and
Sahar Aldakheel and
Linda Petzold and
Mark A. J. Chaplain The Role of Dimerisation and Nuclear
Transport in the Hes1 Gene Regulatory
Network . . . . . . . . . . . . . . . . 766--798
Radek Erban and
Mark B. Flegg and
Garegin A. Papoian Multiscale Stochastic
Reaction--Diffusion Modeling:
Application to Actin Dynamics in
\bionameFilopodia . . . . . . . . . . . 799--818
Siyang Wang and
Johan Elf and
Stefan Hellander and
Per Lötstedt Stochastic Reaction--Diffusion Processes
with Embedded Lower-Dimensional
Structures . . . . . . . . . . . . . . . 819--853
Jifeng Hu and
Hye-Won Kang and
Hans G. Othmer Stochastic Analysis of
Reaction--Diffusion Processes . . . . . 854--894
Alan J. McKane and
Tommaso Biancalani and
Tim Rogers Stochastic Pattern Formation and
Spontaneous Polarisation: The Linear
Noise Approximation and Beyond . . . . . 895--921
I. C. Agbanusi and
S. A. Isaacson A Comparison of Bimolecular Reaction
Models for Stochastic
Reaction--Diffusion Systems . . . . . . 922--946
Maria Bruna and
S. Jonathan Chapman Diffusion of Finite-Size Particles in
Confined Geometries . . . . . . . . . . 947--982
Maria Bruna and
S. Jonathan Chapman Erratum to: Diffusion of Finite-Size
Particles in Confined Geometries . . . . 983--983
Tom Britton and
Pieter Trapman Stochastic Epidemics in Growing
Populations . . . . . . . . . . . . . . 985--996
Maica Krizna A. Gavina and
Jomar F. Rabajante and
Cleofas R. Cervancia Mathematical Programming Models for
Determining the Optimal Location of
Beehives . . . . . . . . . . . . . . . . 997--1016
J. C. L. Alfonso and
G. Buttazzo and
B. García-Archilla and
M. A. Herrero and
L. Núñez Selecting Radiotherapy Dose
Distributions by Means of Constrained
Optimization Problems . . . . . . . . . 1017--1044
Seongwon Lee and
Hyung Ju Hwang and
Yangjin Kim Modeling the Role of TGF-$ \beta $ in
Regulation of the Th17 Phenotype in the
LPS-Driven Immune System . . . . . . . . 1045--1080
Matthew D. Johnston Translated Chemical Reaction Networks 1081--1116
Anna Cohen and
Mary R. Myerscough and
Rosemary S. Thompson Athero-protective Effects of High
Density Lipoproteins (HDL): an ODE Model
of the Early Stages of Atherosclerosis 1117--1142
Lindsay Keegan and
Jonathan Dushoff Analytic Calculation of
Finite-Population Reproductive Numbers
for Direct- and Vector-Transmitted
Diseases with Homogeneous Mixing . . . . 1143--1154
Arnaud Tonnelier Cyclic Negative Feedback Systems: What
is the Chance of Oscillation? . . . . . 1155--1193
Chunhua Shan and
Xiaonong Zhou and
Huaiping Zhu The Dynamics of Growing Islets and
Transmission of \bionameSchistosomiasis
japonica in the Yangtze River . . . . . 1194--1217
M. W. Adamson and
A. Yu. Morozov Bifurcation Analysis of Models with
Uncertain Function Specification: How
Should We Proceed? . . . . . . . . . . . 1218--1240
Qi Qi and
Jonathan A. D. Wattis and
Helen M. Byrne Stochastic Simulations of Normal Aging
and Werner's Syndrome . . . . . . . . . 1241--1269
Simon L. Goede and
Melvin Khee-Shing Leow and
Jan W. A. Smit and
Harald H. Klein and
Johannes W. Dietrich Hypothalamus--Pituitary--Thyroid
Feedback Control: Implications of
Mathematical Modeling and Consequences
for Thyrotropin (TSH) and Free Thyroxine
(FT4) Reference Ranges . . . . . . . . . 1270--1287
Renato Francisco Lopes Mello and
César Castilho A Structured Discrete Model for Dengue
Fever Infections and the Determination
of $ R_0 $ from Age-Stratified
Serological Data . . . . . . . . . . . . 1288--1305
Aurelio A. de los Reyes V. and
Eunok Jung and
Franz Kappel Stabilizing Control for a Pulsatile
Cardiovascular Mathematical Model . . . 1306--1332
Kansuporn Sriyudthsak and
Michio Iwata and
Masami Yokota Hirai and
Fumihide Shiraishi PENDISC: a Simple Method for
Constructing a Mathematical Model from
Time-Series Data of Metabolite
Concentrations . . . . . . . . . . . . . 1333--1351
R. Leander and
A. Friedman Modulation of the cAMP Response by $ G
\alpha_i $ and $ G \beta \gamma $: a
Computational Study of $G$ Protein
Signaling in Immune Cells . . . . . . . 1352--1375
Matthew P. Edgington and
Marcus J. Tindall Fold-Change Detection in a Whole-Pathway
Model of \bionameEscherichia coli
chemotaxis . . . . . . . . . . . . . . . 1376--1395
Yuanshi Wang and
Hong Wu A Cooperative System of Two Species with
Bidirectional Interactions . . . . . . . 1396--1415
Wei-Shen Li and
Yuan-Zhi Shao The Scaling and Shift of Morphogen Gene
Expression Boundary in a Nonlinear
Reaction Diffusion System . . . . . . . 1416--1428
Brian V. Merkey and
David L. Chopp Modeling the Impact of Interspecies
Competition on Performance of a
Microbial Fuel Cell . . . . . . . . . . 1429--1453
Yeon-Jung Seo and
Marit Nilsen-Hamilton and
Howard A. Levine A Computational Study of Alternate SELEX 1455--1521
Yu Jin and
Frank M. Hilker and
Peter M. Steffler and
Mark A. Lewis Seasonal Invasion Dynamics in a
Spatially Heterogeneous River with
Fluctuating Flows . . . . . . . . . . . 1522--1565
Sunhwa Choi and
Eunok Jung Optimal Tuberculosis Prevention and
Control Strategy from a Mathematical
Model Based on Real Data . . . . . . . . 1566--1589
Anastasios Matzavinos and
Blerta Shtylla and
Zachary Voller and
Sijia Liu and
Mark A. J. Chaplain Stochastic Modelling of Chromosomal
Segregation: Errors Can Introduce
Correction . . . . . . . . . . . . . . . 1590--1606
F. B. Agusto Malaria Drug Resistance: The Impact of
Human Movement and Spatial Heterogeneity 1607--1641
Przemys\law Rafa\l Pa\'zdziorek Mathematical Model of Stem Cell
Differentiation and Tissue Regeneration
with Stochastic Noise . . . . . . . . . 1642--1669
Aliya A. Alsaleh and
Abba B. Gumel Analysis of Risk-Structured Vaccination
Model for the Dynamics of Oncogenic and
Warts-Causing HPV Types . . . . . . . . 1670--1726
Hannes Uecke and
Johannes Müller and
Burkhard A. Hense Individual-Based Model for Quorum
Sensing with Background Flow . . . . . . 1727--1746
Claudia P. Ferreira and
Lourdes Esteva and
Wesley A. C. Godoy and
Fernando L. Cônsoli Landscape Diversity Influences Dispersal
and Establishment of Pest with Complex
Nutritional Ecology . . . . . . . . . . 1747--1761
Suzanne L. Weekes and
Brian Barker and
Sarah Bober and
Karina Cisneros and
Justina Cline and
Amanda Thompson and
Lynn Hlatky and
Philip Hahnfeldt and
Heiko Enderling A Multicompartment Mathematical Model of
Cancer Stem Cell-Driven Tumor Growth
Dynamics . . . . . . . . . . . . . . . . 1762--1782
Matthew E. Zumbrum and
David A. Edwards Multiple Surface Reactions in Arrays
with Applications to Optical Biosensors 1783--1808
Eric Alan Eager and
Richard Rebarber and
Brigitte Tenhumberg Modeling and Analysis of a
Density-Dependent Stochastic Integral
Projection Model for a Disturbance
Specialist Plant and Its Seed Bank . . . 1809--1834
Wing-Cheong Lo and
Hay-Oak Park and
Ching-Shan Chou Mathematical Analysis of Spontaneous
Emergence of Cell Polarity . . . . . . . 1835--1865
Masahiro Anazawa Individual-Based Competition Between
Species with Spatial Correlation and
Aggregation . . . . . . . . . . . . . . 1866--1891
Dietrich Flockerzi and
Katharina Holstein and
Carsten Conradi N-site Phosphorylation Systems with 2N-1
Steady States . . . . . . . . . . . . . 1892--1916
Diana White and
Gerda de Vries and
Adriana Dawes Microtubule Patterning in the Presence
of Stationary Motor Distributions . . . 1917--1940
Julio López-Fenner and
Soledad Berríos and
Catalina Manieu and
Jesús Page and
Raúl Fernández-Donoso Bivalent Associations in \bionameMus
domesticus $ 2 n = 40 $ Spermatocytes.
Are They Random? . . . . . . . . . . . . 1941--1952
J. L. Dunster and
H. M. Byrne and
J. R. King The Resolution of Inflammation: a
Mathematical Model of Neutrophil and
Macrophage Interactions . . . . . . . . 1953--1980
Hayley O'Farrell and
Stephen A. Gourley Modelling the Dynamics of Bluetongue
Disease and the Effect of Seasonality 1981--2009
E. A. Sarapata and
L. G. de Pillis A Comparison and Catalog of Intrinsic
Tumor Growth Models . . . . . . . . . . 2010--2024
Jude D. Kong and
William Davis and
Hao Wang Dynamics of a Cholera Transmission Model
with Immunological Threshold and Natural
Phage Control in Reservoir . . . . . . . 2025--2051
Farida Chamchod and
Robert Stephen Cantrell and
Chris Cosner and
Ali N. Hassan and
John C. Beier and
Shigui Ruan A Modeling Approach to Investigate
Epizootic Outbreaks and Enzootic
Maintenance of Rift Valley Fever Virus 2052--2072
Gustavo Cruz-Pacheco and
Lourdes Esteva and
Cristobal Vargas Vaccination Strategies for SIR
Vector-Transmitted Diseases . . . . . . 2073--2090
T. Pearson and
J. A. D. Wattis and
J. R. King and
I. A. MacDonald and
D. J. Mazzatti A Mathematical Model of the Human
Metabolic System and Metabolic
Flexibility . . . . . . . . . . . . . . 2091--2121
Matthew H. Chan and
Peter S. Kim Modelling the Impact of Marine Reserves
on a Population with Depensatory
Dynamics . . . . . . . . . . . . . . . . 2122--2143
Josef Dolejs Age Trajectories of Mortality from All
Diseases in the Six Most Populated
Countries of the South America During
the Last Decades . . . . . . . . . . . . 2144--2174
Angela Peace and
Hao Wang and
Yang Kuang Dynamics of a Producer--Grazer Model
Incorporating the Effects of Excess Food
Nutrient Content on Grazer's Growth . . 2175--2197
Yelena Mandelshtam and
Natalia L. Komarova When Learners Surpass Their Models:
Mathematical Modeling of Learning from
an Inconsistent Source . . . . . . . . . 2198--2216
J. M. Davis and
C. Pozrikidis Self-sustained Oscillations in Blood
Flow Through a Honeycomb Capillary
Network . . . . . . . . . . . . . . . . 2217--2237
Vladyslav P. Evstigneev and
Marina G. Holyavka and
Sergii V. Khrapatiy and
Maxim P. Evstigneev Theoretical Description of Metabolism
Using Queueing Theory . . . . . . . . . 2238--2248
Stephan Fischer and
Samuel Bernard and
Guillaume Beslon and
Carole Knibbe A Model for Genome Size Evolution . . . 2249--2291
Chelsea Liddell and
Nicci Owusu-Brackett and
Dorothy Wallace A Mathematical Model of Sickle Cell
Genome Frequency in Response to
Selective Pressure from Malaria . . . . 2292--2305
Olivier Saut and
Jean-Baptiste Lagaert and
Thierry Colin and
Hassan M. Fathallah-Shaykh A Multilayer Grow-or-Go Model for GBM:
Effects of Invasive Cells and
Anti-Angiogenesis on Growth . . . . . . 2306--2333
Fernando López-Caamal and
Tatiana T. Marquez-Lago Exact Probability Distributions of
Selected Species in Stochastic Chemical
Reaction Networks . . . . . . . . . . . 2334--2361
Alan J. Terry A Minimal Spatio-Temporal Model of the
NF-$ \kappa $ B Signalling Pathway
Exhibits a Range of Behaviours . . . . . 2363--2388
Hayriye Gulbudak and
Maia Martcheva A Structured Avian Influenza Model with
Imperfect Vaccination and
Vaccine-Induced Asymptomatic Infection 2389--2425
Natalia Kravtsova and
Adriana T. Dawes Actomyosin Regulation and Symmetry
Breaking in a Model of Polarization in
the Early \bionameCaenorhabditis elegans
Embryo . . . . . . . . . . . . . . . . . 2426--2448
Zhifeng Yan and
Markus Hilpert A Multiple-Relaxation-Time
Lattice--Boltzmann Model for Bacterial
Chemotaxis: Effects of Initial
Concentration, Diffusion, and
Hydrodynamic Dispersion on Traveling
Bacterial Bands . . . . . . . . . . . . 2449--2475
Gideon A. Ngwa and
Terence T. Wankah and
Mary Y. Fomboh-Nforba and
Calsitus N. Ngonghala and
Miranda I. Teboh-Ewungkem On a Reproductive Stage-Structured Model
for the Population Dynamics of the
Malaria Vector . . . . . . . . . . . . . 2476--2516
J. C. M. Keijsper and
R. A. Pendavingh Reconstructing a Phylogenetic Level-1
Network from Quartets . . . . . . . . . 2517--2541
Franco Blanchini and
Elisa Franco and
Giulia Giordano A Structural Classification of Candidate
Oscillatory and Multistationary
Biochemical Systems . . . . . . . . . . 2542--2569
Abhishek Deshpande and
Manoj Gopalkrishnan Autocatalysis in Reaction Networks . . . 2570--2595
Philippe Heinrich and
Mariano Gonzalez Pisfil and
Jonas Kahn and
Laurent Héliot and
Aymeric Leray Implementation of Transportation
Distance for Analyzing FLIM and FRET
Experiments . . . . . . . . . . . . . . 2596--2626
Paula Rodrigues and
Cristiana J. Silva and
Delfim F. M. Torres Cost-Effectiveness Analysis of Optimal
Control Measures for Tuberculosis . . . 2627--2645
P. Martínez-Rodríguez and
R. Granero-Belinchón and
F. Arroyo-Yebras and
J. L. Bella New Insight into \bionameWolbachia
Epidemiology: Its Varying Incidence
During the Host Life Cycle Can Alter
Bacteria Spread . . . . . . . . . . . . 2646--2663
Paul Cordue and
Simone Linz and
Charles Semple Phylogenetic Networks that Display a
Tree Twice . . . . . . . . . . . . . . . 2664--2679
Joseph P. Stover and
Bruce E. Kendall and
Roger M. Nisbet Consequences of Dispersal Heterogeneity
for Population Spread and Persistence 2681--2710
Serena Spina and
Virginia Giorno and
Patricia Román-Román and
Francisco Torres-Ruiz A Stochastic Model of Cancer Growth
Subject to an Intermittent Treatment
with Combined Effects: Reduction in
Tumor Size and Rise in Growth Rate . . . 2711--2736
Cynthia Sanchez-Tapia and
Frederic Y. M. Wan Fastest Time to Cancer by Loss of Tumor
Suppressor Genes . . . . . . . . . . . . 2737--2784
Shaolin Tan and
Shasha Feng and
Pei Wang and
Yao Chen Strategy Selection in Evolutionary Game
Dynamics on Group Interaction Networks 2785--2805
Xiulan Lai and
Xingfu Zou Repulsion Effect on Superinfecting
Virions by Infected Cells . . . . . . . 2806--2833
S. Payvandi and
K. R. Daly and
K. C. Zygalakis and
T. Roose Mathematical Modelling of the Phloem:
The Importance of Diffusion on Sugar
Transport at Osmotic Equilibrium . . . . 2834--2865
Addolorata Marasco and
Annalisa Iuorio and
Fabrizio Cartení and
Giuliano Bonanomi and
Daniel M. Tartakovsky and
Stefano Mazzoleni and
Francesco Giannino Vegetation Pattern Formation Due to
Interactions Between Water Availability
and Toxicity in Plant--Soil Feedback . . 2866--2883
Álvaro G. López and
Jesús M. Seoane and
Miguel A. F. Sanjuán A Validated Mathematical Model of Tumor
Growth Including Tumor--Host
Interaction, Cell-Mediated Immune
Response and Chemotherapy . . . . . . . 2884--2906
Panayiotis Foteinopoulos and
Bela M. Mulder The Effect of Anisotropic
Microtubule-Bound Nucleations on
Ordering in the Plant Cortical Array . . 2907--2922
Elena Dimitrova and
Brandilyn Stigler Data Identification for Improving Gene
Network Inference using Computational
Algebra . . . . . . . . . . . . . . . . 2923--2940
Chad R. Wells and
Jean M. Tchuenche and
Lauren Ancel Meyers and
Alison P. Galvani and
Chris T. Bauch Erratum to: Impact of Imitation
Processes on the Effectiveness of Ring
Vaccination . . . . . . . . . . . . . . 2941--2944
Alan Veliz-Cuba and
Ajit Kumar and
Kre\vsimir Josi\'c Piecewise Linear and Boolean Models of
Chemical Reaction Networks . . . . . . . 2945--2984
Jeffrey M. Davis On the Linear Stability of Blood Flow
Through Model Capillary Networks . . . . 2985--3015
V. M. Kenkre and
S. Sugaya Theory of the Transmission of Infection
in the Spread of Epidemics: Interacting
Random Walkers with and Without
Confinement . . . . . . . . . . . . . . 3016--3027
R. Allena and
P. K. Maini Reaction--Diffusion Finite Element Model
of Lateral Line Primordium Migration to
Explore Cell Leadership . . . . . . . . 3028--3050
Yang Cao and
Radek Erban Stochastic Turing Patterns: Analysis of
Compartment-Based Approaches . . . . . . 3051--3069
Anne Seppänen and
Kalle Parvinen Evolution of Density-Dependent
Cooperation . . . . . . . . . . . . . . 3070--3087
C. Y. Chen and
J. P. Ward A Mathematical Model of the Growth of
Uterine Myomas . . . . . . . . . . . . . 3088--3121
Garrett Nieddu and
Lora Billings and
Eric Forgoston Analysis and Control of Pre-extinction
Dynamics in Stochastic Populations . . . 3122--3137
Alexander Lorz and
Tommaso Lorenzi and
Jean Clairambault and
Alexandre Escargueil and
Beno\^\it Perthame Modeling the Effects of Space Structure
and Combination Therapies on Phenotypic
Heterogeneity and Drug Resistance in
Solid Tumors . . . . . . . . . . . . . . 1--22
Samuel A. Alexander and
Arie de Bruin and
D. J. Kornet An Alternative Construction of
Internodons: The Emergence of a
Multi-level Tree of Life . . . . . . . . 23--45
Sarah Baskowski and
Vincent Moulton and
Andreas Spillner and
Taoyang Wu Neighborhoods of Trees in Circular
Orderings . . . . . . . . . . . . . . . 46--70
B. Roy Frieden and
Robert A. Gatenby Cancer Suppression by Compression . . . 71--82
Venu Kurella and
Justin C. Tzou and
Daniel Coombs and
Michael J. Ward Asymptotic Analysis of First Passage
Time Problems Inspired by Ecology . . . 83--125
Carsten Conradi and
Anne Shiu A Global Convergence Result for
Processive Multisite Phosphorylation
Systems . . . . . . . . . . . . . . . . 126--155
L. F. Echeverri and
M. A. Herrero and
J. M. Lopez and
G. Oleaga Early Stages of Bone Fracture Healing:
Formation of a Fibrin--Collagen Scaffold
in the Fracture Hematoma . . . . . . . . 156--183
Hakim Al Garalleh and
Ngamta Thamwattana and
Barry J. Cox and
James M. Hill Modeling Interactions Between C $_{60}$
Antiviral Compounds and HIV Protease . . 184--201
Yuanshi Wang and
Shikun Wang Persistence of Pollination Mutualisms in
the Presence of Ants . . . . . . . . . . 202--229
D. E. Postnov and
A. Y. Neganova and
O. V. Sosnovtseva and
N.-H. Holstein-Rathlou and
J. C. Brings Jacobsen Conducted Vasoreactivity: the Dynamical
Point of View . . . . . . . . . . . . . 230--249
Simon Levin What Mathematics can do for
Sustainability . . . . . . . . . . . . . 251--253
Rachata Muneepeerakul and
Carlos Castillo-Chavez Towards a Quantitative Science of
Sustainability . . . . . . . . . . . . . 254--258
John M. Anderies Understanding the Dynamics of
Sustainable Social--Ecological Systems:
Human Behavior, Institutions, and
Regulatory Feedback Networks . . . . . . 259--280
Michel De Lara and
Vincent Martinet and
Luc Doyen Satisficing Versus Optimality: Criteria
for Sustainability . . . . . . . . . . . 281--297
Giulia Vico and
Amilcare Porporato Ecohydrology of Agroecosystems:
Quantitative Approaches Towards
Sustainable Irrigation . . . . . . . . . 298--318
Irina Kareva and
Benjamin Morin and
Carlos Castillo-Chavez Resource Consumption, Sustainability,
and Cancer . . . . . . . . . . . . . . . 319--338
Luca Ridolfi and
Paolo D'Odorico and
Francesco Laio Indicators of Collapse in Systems
Undergoing Unsustainable Growth . . . . 339--347
Eli P. Fenichel and
Jinhua Zhao Sustainability and Substitutability . . 348--367
David Angulo and
Fabiola Angulo and
Gerard Olivar Dynamics and Forecast in a Simple Model
of Sustainable Development for Rural
Populations . . . . . . . . . . . . . . 368--389
Murad R. Qubbaj and
Shade T. Shutters and
Rachata Muneepeerakul Living in a Network of Scaling Cities
and Finite Resources . . . . . . . . . . 390--407
Fabiano L. Ribeiro A Non-phenomenological Model of
Competition and Cooperation to Explain
Population Growth Behaviors . . . . . . 409--433
Matthew Oremland and
Reinhard Laubenbacher Optimal Harvesting for a Predator--Prey
Agent-Based Model using Difference
Equations . . . . . . . . . . . . . . . 434--459
Fred Brauer Some Simple Nosocomial Disease
Transmission Models . . . . . . . . . . 460--469
Jason R. Picardo and
S. Pushpavanam Understanding the Shape of Ant Craters:
a Continuum Model . . . . . . . . . . . 470--487
Marianne Wilcox and
Allan R. Willms and
William F. Langford A Model of the Effects of Fluid
Variation due to Body Position on
Cheyne--Stokes Respiration . . . . . . . 488--498
Anthony DeLegge and
Katie Hunzinger and
Reema Khatri and
Kiran Munir An Epidemic Model With a Multistage
Vaccine . . . . . . . . . . . . . . . . 499--513
C. M. Saad-Roy and
Zhisheng Shuai and
P. van den Driessche Models of Bovine Babesiosis Including
Juvenile Cattle . . . . . . . . . . . . 514--547
Marcus R. Garvie and
John Burkardt and
Jeff Morgan Simple Finite Element Methods for
Approximating Predator--Prey Dynamics in
Two Dimensions Using Matlab . . . . . . 548--578
Sarah Bastkowski and
Vincent Moulton and
Andreas Spillner and
Taoyang Wu Erratum to: Neighborhoods of Trees in
Circular Orderings . . . . . . . . . . . 579--579
Hannes Uecker and
Johannes Müller and
Burkhard A. Hense Erratum to: Individual-Based Model for
Quorum Sensing with Background Flow . . 580--580
Matthew J. Simpson and
Ruth E. Baker Special Issue on Spatial Moment
Techniques for Modelling Biological
Processes . . . . . . . . . . . . . . . 581--585
Michael J. Plank and
Richard Law Spatial Point Processes and Moment
Dynamics in the Life Sciences: a
Parsimonious Derivation and Some
Extensions . . . . . . . . . . . . . . . 586--613
K. J. Sharkey and
I. Z. Kiss and
R. R. Wilkinson and
P. L. Simon Exact Equations for SIR Epidemics on
Tree Graphs . . . . . . . . . . . . . . 614--645
Thomas House Algebraic Moment Closure for Population
Dynamics on Discrete Structures . . . . 646--659
Carsten Mente and
Anja Voss-Böhme and
Andreas Deutsch Analysis of Individual Cell Trajectories
in Lattice--Gas Cellular Automaton
Models for Migrating Cell Populations 660--697
David E. Hiebeler and
Rachel M. Rier and
Josh Audibert and
Phillip J. LeClair and
Anna Webber Variability in a Community-Structured
SIS Epidemiological Model . . . . . . . 698--712
Deborah C. Markham and
Matthew J. Simpson and
Ruth E. Baker Choosing an Appropriate Modelling
Framework for Analysing Multispecies
Co-culture Cell Biology Experiments . . 713--734
Michael C. Mackey and
Philip K. Maini What Has Mathematics Done for Biology? 735--738
David C. Dale and
Michael C. Mackey Understanding, Treating and Avoiding
Hematological Disease: Better Medicine
Through Mathematics? . . . . . . . . . . 739--757
Avner Friedman and
Wenrui Hao A Mathematical Model of Atherosclerosis
with Reverse Cholesterol Transport and
Associated Risk Factors . . . . . . . . 758--781
Leon Glass and
Alvin Shrier Functional Characterization of
Oscillatory and Excitable Media . . . . 782--795
John J. Tyson and
Bela Novak Bistability, Oscillations, and Traveling
Waves in Frog Egg Extracts . . . . . . . 796--816
David M. Umulis and
Hans G. Othmer The Role of Mathematical Models in
Understanding Pattern Formation in
Developmental Biology . . . . . . . . . 817--845
Pamela R. Jackson and
Joseph Juliano and
Andrea Hawkins-Daarud and
Russell C. Rockne and
Kristin R. Swanson Patient-Specific Mathematical
Neuro-Oncology: Using a Simple
Proliferation and Invasion Tumor Model
to Inform Clinical Practice . . . . . . 846--856
Marc Mangel Stochastic Dynamic Programming
Illuminates the Link Between
Environment, Physiology, and Evolution 857--877
Rodrick Wallace Metabolic Free Energy and Biological
Codes: a `Data Rate Theorem' Aging Model 879--903
Xingjiang Chen and
James Sneyd A Computational Model of the Dendron of
the GnRH Neuron . . . . . . . . . . . . 904--926
Klodeta Kura and
Mark Broom and
Anne Kandler Modelling Dominance Hierarchies Under
Winner and Loser Effects . . . . . . . . 927--952
R. Edwards and
A. Machina and
G. McGregor and
P. van den Driessche A Modelling Framework for Gene
Regulatory Networks Including
Transcription and Translation . . . . . 953--983
Karly Jacobsen and
Luke Russell and
Balveen Kaur and
Avner Friedman Effects of CCN1 and Macrophage Content
on Glioma Virotherapy: a Mathematical
Model . . . . . . . . . . . . . . . . . 984--1012
Inom Mirzaev and
David M. Bortz Laplacian Dynamics with Synthesis and
Degradation . . . . . . . . . . . . . . 1013--1045
Tian Hong and
Cihan Oguz and
John J. Tyson A Mathematical Framework for
Understanding Four-Dimensional
Heterogeneous Differentiation of CD4$^+$
T Cells . . . . . . . . . . . . . . . . 1046--1064
Matthew D. Johnston A Computational Approach to Steady State
Correspondence of Regular and
Generalized Mass Action Systems . . . . 1065--1100
Charles Heppell and
Tiina Roose and
Giles Richardson A Model for Interstitial Drainage
Through a Sliding Lymphatic Valve . . . 1101--1131
K. J. Painter and
J. M. Bloomfield and
J. A. Sherratt and
A. Gerisch A Nonlocal Model for Contact Attraction
and Repulsion in Heterogeneous Cell
Populations . . . . . . . . . . . . . . 1132--1165
S. Ghorai and
R. Singh and
N. A. Hill Wavelength Selection in Gyrotactic
Bioconvection . . . . . . . . . . . . . 1166--1184
Fabio Mavelli and
Roberto Marangoni and
Pasquale Stano A Simple Protein Synthesis Model for the
PURE System Operation . . . . . . . . . 1185--1212
Jake P. Taylor-King and
E. Emiel van Loon and
Gabriel Rosser and
S. Jon Chapman From Birds to Bacteria: Generalised
Velocity Jump Processes with Resting
States . . . . . . . . . . . . . . . . . 1213--1236
Xinxin Wang and
Shengqiang Liu and
Lin Wang and
Weiwei Zhang An Epidemic Patchy Model with
Entry--Exit Screening . . . . . . . . . 1237--1255
Jacob P. Duncan and
James A. Powell and
Luis F. Gordillo and
Joseph Eason A Model for Mountain Pine Beetle
Outbreaks in an Age-Structured Forest:
Predicting Severity and
Outbreak-Recovery Cycle Period . . . . . 1256--1284
Yu Zhao and
Sanling Yuan and
Junling Ma Survival and Stationary Distribution
Analysis of a Stochastic Competitive
Model of Three Species in a Polluted
Environment . . . . . . . . . . . . . . 1285--1326
Glenn Young and
Bard Ermentrout and
Jonathan E. Rubin A Boundary Value Approach to
Optimization with an Application to
\bionameSalmonella Competition . . . . . 1327--1348
Wanho Lee and
Eunok Jung A Multiscale Model of Cardiovascular
System Including an Immersed Whole Heart
in the Cases of Normal and Ventricular
Septal Defect (VSD) . . . . . . . . . . 1349--1376
Nathaniel J. Karst and
Brian D. Storey and
John B. Geddes Oscillations and Multiple Equilibria in
Microvascular Blood Flow . . . . . . . . 1377--1400
Richard Kollár and
Katarína \vSi\vsková Extension and Justification of
Quasi--Steady-State Approximation for
Reversible Bimolecular Binding . . . . . 1401--1436
Eric Forgoston and
Leah B. Shaw and
Ira B. Schwartz A Framework for Inferring Unobserved
Multistrain Epidemic Subpopulations
Using Synchronization Dynamics . . . . . 1437--1455
Kam D. Dahlquist and
Ben G. Fitzpatrick and
Erika T. Camacho and
Stephanie D. Entzminger and
Nathan C. Wanner Parameter Estimation for Gene Regulatory
Networks from Microarray Data: Cold
Shock Response in \bionameSaccharomyces
cerevisiae . . . . . . . . . . . . . . . 1457--1492
Vardayani Ratti and
Peter G. Kevan and
Hermann J. Eberl A Mathematical Model of the
Honeybee--\bionameVarroa
destructor--Acute Bee Paralysis Virus
System with Seasonal Effects . . . . . . 1493--1520
A. Rabinovitch and
M. Friedman and
D. Braunstein and
Y. Biton and
I. Aviram The Baroreflex Mechanism Revisited . . . 1521--1538
A. C. Fowler and
T. Déirdre Hollingsworth Simple Approximations for Epidemics with
Exponential and Fixed Infectious Periods 1539--1555
Hayley C. Warsinske and
Shanna L. Ashley and
Jennifer J. Linderman and
Bethany B. Moore and
Denise E. Kirschner Identifying Mechanisms of Homeostatic
Signaling in Fibroblast Differentiation 1556--1582
Luiz Alberto Díaz Rodrigues and
Diomar Cristina Mistro and
Elisa Regina Cara and
Natalia Petrovskaya and
Sergei Petrovskii Patchy Invasion of Stage-Structured
Alien Species with Short-Distance and
Long-Distance Dispersal . . . . . . . . 1583--1619
Nicolette Meshkat and
Seth Sullivant and
Marisa Eisenberg Identifiability Results for Several
Classes of Linear Compartment Models . . 1620--1651
Kelly M. Paton and
Lisa Anderson and
Pauline Flottat and
Eric N. Cytrynbaum A Model of Chloroplast Growth Regulation
in Mesophyll Cells . . . . . . . . . . . 1653--1667
Benjamin Ivorra and
Di\`ene Ngom and
Ángel M. Ramos Be-CoDiS: a Mathematical Model to
Predict the Risk of Human Diseases
Spread Between Countries --- Validation
and Application to the 2014--2015 Ebola
Virus Disease Epidemic . . . . . . . . . 1668--1704
Dan Li and
Jing'an Cui and
Meng Liu and
Shengqiang Liu The Evolutionary Dynamics of Stochastic
Epidemic Model with Nonlinear Incidence
Rate . . . . . . . . . . . . . . . . . . 1705--1743
David F. Anderson and
Gheorghe Craciun and
Manoj Gopalkrishnan and
Carsten Wiuf Lyapunov Functions, Stationary
Distributions, and Non-equilibrium
Potential for Reaction Networks . . . . 1744--1767
Wessel N. van Wieringen and
Aad W. van der Vaart Transcriptomic Heterogeneity in Cancer
as a Consequence of Dysregulation of the
Gene--Gene Interaction Network . . . . . 1768--1786
Angela M. Jarrett and
N. G. Cogan and
M. Y. Hussaini Mathematical Model for MRSA Nasal
Carriage . . . . . . . . . . . . . . . . 1787--1812
M. R. Nikmaneshi and
B. Firoozabadi and
M. S. Saidi Two-Phase Acto-Cytosolic Fluid Flow in a
Moving Keratocyte: a $2$D Continuum
Model . . . . . . . . . . . . . . . . . 1813--1832
Tomas Gedeon and
Patrick Murphy Dynamics of Simple Food Webs . . . . . . 1833--1853
Glenn Young and
Eunha Shim and
G. Bard Ermentrout Qualitative Effects of Monovalent
Vaccination Against Rotavirus: a
Comparison of North America and South
America . . . . . . . . . . . . . . . . 1854--1885
J. Z. Farkas and
A. Yu. Morozov and
E. G. Arashkevich and
A. Nikishina Revisiting the Stability of Spatially
Heterogeneous Predator--Prey Systems
Under Eutrophication . . . . . . . . . . 1886--1908
N. Sherborne and
K. B. Blyuss and
I. Z. Kiss Dynamics of Multi-stage Infections on
Networks . . . . . . . . . . . . . . . . 1909--1933
Anne Talkington and
Rick Durrett Estimating Tumor Growth Rates \em In
Vivo . . . . . . . . . . . . . . . . . . 1934--1954
Laetitia Laguzet and
Gabriel Turinici Individual Vaccination as Nash
Equilibrium in a SIR Model with
Application to the 2009--2010 Influenza
A (H1N1) Epidemic in France . . . . . . 1955--1984
Michael Birch and
Benjamin M. Bolker Evolutionary Stability of Minimal
Mutation Rates in an Evo-epidemiological
Model . . . . . . . . . . . . . . . . . 1985--2003
Derdei Bichara and
Yun Kang and
Carlos Castillo-Chavez and
Richard Horan and
Charles Perrings SIS and SIR Epidemic Models Under
Virtual Dispersal . . . . . . . . . . . 2004--2034
Ana-Maria Croicu Short- and Long--Term Optimal Control of
a Mathematical Model for HIV Infection
of $ C D4^+T $ Cells . . . . . . . . . 2035--2071
Canrong Tian Turing Pattern Formation in a Semiarid
Vegetation Model with
Fractional-in-Space Diffusion . . . . . 2072--2085
Kazi A. Rahman and
Rangarajan Sudarsan and
Hermann J. Eberl A Mixed-Culture Biofilm Model with
Cross-Diffusion . . . . . . . . . . . . 2086--2124
Austin Phillips and
Mark Kot Persistence in a Two-Dimensional
Moving-Habitat Model . . . . . . . . . . 2125--2159
Mark Whidden and
Nick Cogan and
Matt Donahue and
Fernando Navarrete and
Leonardo De La Fuente A Two-Dimensional Multiphase Model of
Biofilm Formation in Microfluidic
Chambers . . . . . . . . . . . . . . . . 2161--2179
Satya Swarup Samal and
Dima Grigoriev and
Holger Fröhlich and
Andreas Weber and
Ovidiu Radulescu A Geometric Method for Model Reduction
of Biochemical Networks with Polynomial
Rate Functions . . . . . . . . . . . . . 2180--2211
Diána Knipl and
Seyed M. Moghadas The Potential Impact of Vaccination on
the Dynamics of Dengue Infections . . . 2212--2230
Jude D. Kong and
Chaochao Jin and
Hao Wang The Inverse Method for a Childhood
Infectious Disease Model with Its
Application to Pre-vaccination and
Post-vaccination Measles Data . . . . . 2231--2263
Qiming Wang and
Nathan Gold and
Martin G. Frasch and
Huaxiong Huang and
Marc Thiriet and
Xiaogang Wang Mathematical Model of Cardiovascular and
Metabolic Responses to Umbilical Cord
Occlusions in Fetal Sheep . . . . . . . 2264--2293
Nitin A. Krishna and
Hannah M. Pennington and
Canaan D. Coppola and
Marisa C. Eisenberg and
Richard C. Schugart Connecting Local and Global
Sensitivities in a Mathematical Model
for Wound Healing . . . . . . . . . . . 2294--2324
Yadigar Sekerci and
Sergei Petrovskii Mathematical Modelling of
Plankton--Oxygen Dynamics Under the
Climate Change . . . . . . . . . . . . . 2325--2353
Maurizio Serva A Stochastic Model for the Interbreeding
of Two Populations Continuously Sharing
the Same Habitat . . . . . . . . . . . . 2354--2365
Mike Mesterton-Gibbons and
Yao Dai An Effect of Landmarks on Territory
Shape in a Convict Cichlid . . . . . . . 2366--2378
Reinhard Laubenbacher and
Alan Hastings Editorial . . . . . . . . . . . . . . . 1--3
Tri Sri Noor Asih and
Suzanne Lenhart and
Steven Wise and
Lina Aryati and
F. Adi-Kusumo and
Mardiah S. Hardianti and
Jonathan Forde The Dynamics of HPV Infection and
Cervical Cancer Cells . . . . . . . . . 4--20
Elizabeth Gross and
Heather A. Harrington and
Zvi Rosen and
Bernd Sturmfels Algebraic Systems Biology: a Case Study
for the Wnt Pathway . . . . . . . . . . 21--51
Laura J. Cooper and
James P. Heppell and
Geraldine F. Clough and
Bharathram Ganapathisubramani and
Tiina Roose An Image-Based Model of Fluid Flow
Through Lymph Nodes . . . . . . . . . . 52--71
Jody R. Reimer and
Michael B. Bonsall and
Philip K. Maini Approximating the Critical Domain Size
of Integrodifference Equations . . . . . 72--109
Guilherme C. P. Innocentini and
Michael Forger and
Ovidiu Radulescu and
Fernando Antoneli Protein Synthesis Driven by Dynamical
Stochastic Transcription . . . . . . . . 110--131
Charles Semple Phylogenetic Networks with Every
Embedded Phylogenetic Tree a Base Tree 132--137
Xiaotian Wu and
Gergely Röst and
Xingfu Zou Impact of Spring Bird Migration on the
Range Expansion of \bionameIxodes
scapularis Tick Population . . . . . . . 138--168
Edward K. Waters and
Andrew J. Hamilton and
Harvinder S. Sidhu and
Leesa A. Sidhu and
Michelle Dunbar Zoonotic Transmission of Waterborne
Disease: a Mathematical Model . . . . . 169--183
Luis Fernandez Lopez and
Marcos Amaku and
Francisco Antonio Bezerra Coutinho and
Mikkel Quam and
Marcelo Nascimento Burattini and
Claudio José Struchiner and
Annelies Wilder-Smith and
Eduardo Massad Modeling Importations and Exportations
of Infectious Diseases via Travelers . . 185--209
Nathan Mellor and
Malcolm J. Bennett and
John R. King GH3-Mediated Auxin Conjugation Can
Result in Either Transient or
Oscillatory Transcriptional Auxin
Responses . . . . . . . . . . . . . . . 210--234
Z. Rapti and
C. E. Cáceres Effects of Intrinsic and Extrinsic Host
Mortality on Disease Spread . . . . . . 235--253
Yong-Jung Kim and
Ohsang Kwon Evolution of Dispersal with Starvation
Measure and Coexistence . . . . . . . . 254--279
Michael J. Plank and
Jonathan W. Pitchford and
Alex James Evolutionarily Stable Strategies for
Fecundity and Swimming Speed of Fish . . 280--292
Michael Lydeamore and
Nigel Bean and
Andrew J. Black and
Joshua V. Ross Choice of Antiviral Allocation Scheme
for Pandemic Influenza Depends on Strain
Transmissibility, Delivery Delay and
Stockpile Size . . . . . . . . . . . . . 293--321
Xia Wang and
Xinyu Song and
Sanyi Tang and
Libin Rong Dynamics of an HIV Model with Multiple
Infection Stages and Treatment with
Different Drug Classes . . . . . . . . . 322--349
A. M. de Roos and
O. Diekmann and
P. Getto and
M. A. Kirkilionis Erratum to: Numerical Equilibrium
Analysis for Structured Consumer
Resource Models . . . . . . . . . . . . 350--351
Tomas Gedeon and
Patrick Murphy Erratum to: Dynamics of Simple Food Webs 352--352
Qihua Huang and
Hao Wang and
Anthony Ricciardi and
Mark A. Lewis Temperature- and Turbidity-Dependent
Competitive Interactions Between
Invasive Freshwater Mussels . . . . . . 353--380
Jiantao Zhao and
Jianjun Paul Tian and
Junjie Wei Minimal Model of Plankton Systems
Revisited with Spatial Diffusion and
Maturation Delay . . . . . . . . . . . . 381--412
Stephen Ippolito and
Vincent Naudot and
Erik G. Noonburg Alternative Stable States, Coral Reefs,
and Smooth Dynamics with a Kick . . . . 413--435
L. E. Brown and
A. M. Middleton and
J. R. King and
M. Loose Multicellular Mathematical Modelling of
Mesendoderm Formation in Amphibians . . 436--467
C. N. Angstmann and
B. I. Henry and
A. V. McGann A Fractional Order Recovery SIR Model
from a Stochastic Process . . . . . . . 468--499
James R. Moore and
Fred Adler A Mathematical Model of T1D Acceleration
and Delay by Viral Infection . . . . . . 500--530
M. Wang and
Y. Huang and
Z. Wu Simulation of Yeast Cooperation in $2$D 531--555
Uffe Hògsbro Thygesen A Diffusion Approximation Based on
Renewal Processes with Applications to
Strongly Biased Run-Tumble Motion . . . 556--579
Mykhailo Potomkin and
Shawn D. Ryan and
Leonid Berlyand Effective Rheological Properties in
Semi-dilute Bacterial Suspensions . . . 580--615
Youfang Cao and
Anna Terebus and
Jie Liang State Space Truncation with Quantified
Errors for Accurate Solutions to
Discrete Chemical Master Equation . . . 617--661
Dongyu Lv and
Meng Fan and
Yun Kang and
Krystal Blanco Modeling Refuge Effect of Submerged
Macrophytes in Lake System . . . . . . . 662--694
Frédéric M. Hamelin and
François Castella and
Valentin Doli and
Beno\^\it Marçais and
Virginie Ravigné and
Mark A. Lewis Mate Finding, Sexual Spore Production,
and the Spread of Fungal Plant Parasites 695--712
Ágnes Bodó and
Gyula Y. Katona and
Péter L. Simon SIS Epidemic Propagation on Hypergraphs 713--735
Michael Sadovsky and
Mariya Senashova Model of Prey--Predator Dynamics with
Reflexive Spatial Behaviour of Species
Based on Optimal Migration . . . . . . . 736--753
Anna Konstorum and
Thomas Hillen and
John Lowengrub Feedback Regulation in a Cancer Stem
Cell Model can Cause an Allee Effect . . 754--785
Joao Paulo Pereira Zanetti and
Priscila Biller and
Joao Meidanis Median Approximations for Genomes
Modeled as Matrices . . . . . . . . . . 786--814
A. C. Fowler and
T. Déirdre Hollingsworth The Dynamics of \bionameAscaris
lumbricoides Infections . . . . . . . . 815--833
G. P. Karev and
I. Kareva Mathematical Modeling of Extinction of
Inhomogeneous Populations . . . . . . . 834--858
Shoshana R. Leffler and
Emilie Legué and
Orlando Aristizábal and
Alexandra L. Joyner and
Charles S. Peskin and
Daniel H. Turnbull A Mathematical Model of Granule Cell
Generation During Mouse Cerebellum
Development . . . . . . . . . . . . . . 859--878
Yun Kang and
Guy Theraulaz Dynamical Models of Task Organization in
Social Insect Colonies . . . . . . . . . 879--915
Chasity Dorsett and
Hyunju Oh and
Marie Laura Paulemond and
Jan Rychtá\vr Optimal Repellent Usage to Combat Dengue
Fever . . . . . . . . . . . . . . . . . 916--922
Ioannis Sgouralis and
Vasileios Maroulas and
Anita T. Layton Transfer Function Analysis of Dynamic
Blood Flow Control in the Rat Kidney . . 923--960
Maria Anaya and
Olga Anipchenko-Ulaj and
Aisha Ashfaq and
Joyce Chiu and
Mahedi Kaiser and
Max Shoji Ohsawa and
Megan Owen and
Ella Pavlechko and
Katherine St. John and
Shivam Suleria and
Keith Thompson and
Corrine Yap On Determining if Tree-based Networks
Contain Fixed Trees . . . . . . . . . . 961--969
Marcos Amaku and
Marcelo Nascimento Burattini and
Francisco Antonio Bezerra Coutinho and
Luis Fernandez Lopez and
Fabio Mesquita and
Marcelo Contardo Moscoso Naveira and
Gerson Fernando Mendes Pereira and
Melina Érica Santos and
Eduardo Massad Estimating the Size of the HCV Infection
Prevalence: A Modeling Approach Using
the Incidence of Cases Reported to an
Official Notification System . . . . . . 970--990
Yuri S. Semenov and
Artem S. Novozhilov On Eigen's Quasispecies Model,
Two-Valued Fitness Landscapes, and
Isometry Groups Acting on Finite Metric
Spaces . . . . . . . . . . . . . . . . . 991--1038
Johannes W. R. Martini and
Martin Schlather and
Stefan Schütz A Model for Carrier-Mediated Biological
Signal Transduction Based on Equilibrium
Ligand Binding Theory . . . . . . . . . 1039--1057
Ellen Urheim and
Eric Ford and
Katherine St. John Characterizing Local Optima for Maximum
Parsimony . . . . . . . . . . . . . . . 1058--1075
Gaoyang Fan and
Bree Cummins and
Tomá\vs Gedeon Convergence Properties of
Posttranslationally Modified
Protein--Protein Switching Networks with
Fast Decay Rates . . . . . . . . . . . . 1077--1120
Dimitris G. Patsatzis and
Dimitris T. Maris and
Dimitris A. Goussis Asymptotic Analysis of a Target-Mediated
Drug Disposition Model: Algorithmic and
Traditional Approaches . . . . . . . . . 1121--1161
Adam Rhodes and
Thomas Hillen Mathematical Modeling of the Role of
\bionameSurvivin on Dedifferentiation
and Radioresistance in Cancer . . . . . 1162--1188
Taliesin Pearson and
Jonathan A. D. Wattis and
John R. King and
Ian A. MacDonald and
Dawn J. Mazzatti The Effects of Insulin Resistance on
Individual Tissues: an Application of a
Mathematical Model of Metabolism in
Humans . . . . . . . . . . . . . . . . . 1189--1217
María Rosa Durán and
Ana Podolski-Reni\'c and
Arturo Álvarez-Arenas and
Jelena Dini\'c and
Juan Belmonte-Beitia and
Milica Pe\vsi\'c and
Víctor M. Pérez-García Transfer of Drug Resistance
Characteristics Between Cancer Cell
Subpopulations: a Study Using Simple
Mathematical Models . . . . . . . . . . 1218--1237
Raphaël Cerf and
Joseba Dalmau Quasispecies on Class-Dependent Fitness
Landscapes . . . . . . . . . . . . . . . 1238--1258
Klodeta Kura and
Mark Broom and
Anne Kandler A Game-Theoretical Winner and Loser
Model of Dominance Hierarchy Formation 1259--1290
Tomas Gedeon and
Mark Pernarowski and
Adam Wilander Cyclic Feedback Systems with Quorum
Sensing Coupling . . . . . . . . . . . . 1291--1317
Ying Chen and
Brendan C. Fry and
Anita T. Layton Modeling Glucose Metabolism in the
Kidney . . . . . . . . . . . . . . . . . 1318--1336
Bingtuan Li and
Sharon Bewick and
Michael R. Barnard and
William F. Fagan Persistence and Spreading Speeds of
Integro--Difference Equations with an
Expanding or Contracting Habitat . . . . 1337--1379
S. E. Boronovsky and
Y. R. Nartsissov Computer Simulator of Glycine Receptor
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World . . . . . . . . . . . . . . . . . 1380--1393
Erika T. Camacho and
Thierry Léveillard and
José-Alain Sahel and
Stephen Wirkus Mathematical Model of the Role of RdCVF
in the Coexistence of Rods and Cones in
a Healthy Eye . . . . . . . . . . . . . 1394--1409
Jorge A. Castillo and
Faustino Sánchez-Garduño and
Pablo Padilla A Turing--Hopf Bifurcation Scenario for
Pattern Formation on Growing Domains . . 1410--1449
Dimah Dera and
Nidhal Bouaynaya and
Hassan M. Fathallah-Shaykh Automated Robust Image Segmentation:
Level Set Method Using Nonnegative
Matrix Factorization with Application to
Brain MRI . . . . . . . . . . . . . . . 1450--1476
Idan Alter and
Yoram Louzoun Population Growth Combined with Wide
Offspring Distributions can Increase
Fixation Rate and Reduce Genetic
Diversity . . . . . . . . . . . . . . . 1477--1492
D. Pal and
G. S. Mahapatra and
G. P. Samanta Stability and Bionomic Analysis of Fuzzy
Prey--Predator Harvesting Model in
Presence of Toxicity: a Dynamic Approach 1493--1519
Mihaela T. Matache and
Valentin Matache Logical Reduction of Biological Networks
to Their Most Determinative Components 1520--1545
Julia Sánchez Sanz and
Philipp Getto Numerical Bifurcation Analysis of
Physiologically Structured Populations:
Consumer--Resource, Cannibalistic and
Trophic Models . . . . . . . . . . . . . 1546--1584
Judith Pérez-Velázquez and
Meltem Gölgeli and
Rodolfo García-Contreras Mathematical Modelling of Bacterial
Quorum Sensing: a Review . . . . . . . . 1585--1639
Christopher Lester and
Ruth E. Baker and
Michael B. Giles and
Christian A. Yates Extending the Multi-level Method for the
Simulation of Stochastic Biological
Systems . . . . . . . . . . . . . . . . 1640--1677
Stephen A. Gourley and
Jing Li and
Xingfu Zou A Mathematical Model for Biocontrol of
the Invasive Weed \bionameFallopia
japonica . . . . . . . . . . . . . . . . 1678--1702
Duan Chen A New Poisson--Nernst--Planck Model with
Ion--Water Interactions for Charge
Transport in Ion Channels . . . . . . . 1703--1726
Meng Fan and
Ping Wu and
Zhilan Feng and
Robert K. Swihart Dynamics of Predator--Prey
Metapopulations with Allee Effects . . . 1727--1748
Kalle Parvinen and
Åke Brännström Evolution of Site-Selection Stabilizes
Population Dynamics, Promotes Even
Distribution of Individuals, and
Occasionally Causes Evolutionary Suicide 1749--1772
Philippe Gambette and
Leo van Iersel and
Steven Kelk and
Fabio Pardi and
Celine Scornavacca Do Branch Lengths Help to Locate a Tree
in a Phylogenetic Network? . . . . . . . 1773--1795
Necibe Tuncer and
Hayriye Gulbudak and
Vincent L. Cannataro and
Maia Martcheva Structural and Practical Identifiability
Issues of Immuno--Epidemiological
Vector--Host Models with Application to
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Alexander B. Beams and
Damon J. A. Toth and
Karim Khader and
Frederick R. Adler Harnessing Intra-Host Strain Competition
to Limit Antibiotic Resistance:
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Andrés Pomi A Possible Neural Representation of
Mathematical Group Structures . . . . . 1847--1865
Juliette Bouhours and
Mark A. Lewis Climate Change and Integrodifference
Equations in a Stochastic Environment 1866--1903
Arianna Bianchi and
Kevin J. Painter and
Jonathan A. Sherratt Spatio-temporal Models of
Lymphangiogenesis in Wound Healing . . . 1904--1941
Rosemary O'Connell and
Yoichiro Mori Effects of Glia in a Triphasic Continuum
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Xianghong Zhang and
Sanyi Tang and
Robert A. Cheke and
Huaiping Zhu Modeling the Effects of Augmentation
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Jorge A. Falcón-Lezama and
Ruth A. Martínez-Vega and
Pablo A. Kuri-Morales and
José Ramos-Castañeda and
Ben Adams Day-to-Day Population Movement and the
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Brian P. Yurk Homogenization of a Directed Dispersal
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Yuqin Zhao and
Daniel T. Wood and
Hristo V. Kojouharov and
Yang Kuang and
Dobromir T. Dimitrov Impact of Population Recruitment on the
HIV Epidemics and the Effectiveness of
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Raluca Eftimie and
Joseph J. Gillard and
Doreen A. Cantrell Mathematical Models for Immunology:
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Mariya Ptashnyk and
Brian Seguin The Impact of Microfibril Orientations
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and Tissues . . . . . . . . . . . . . . 2135--2164
Jimmy Garnier and
Mark A. Lewis Expansion Under Climate Change: The
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Vladimir Kozlov and
Sergey Vakulenko and
Uno Wennergren Stability of Ecosystems Under Invasions 2186--2211
Martin Vyska and
Christopher Gilligan Complex Dynamical Behaviour in an
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David Baca-Carrasco and
Jorge X. Velasco-Hernández Sex, Mosquitoes and Epidemics: an
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Michael D. Nicholson and
Tibor Antal Universal Asymptotic Clone Size
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Rachelle N. Binny and
Alex James and
Michael J. Plank Collective Cell Behaviour with
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Alan Hastings and
Reinhard Laubenbacher Editorial . . . . . . . . . . . . . . . 2303--2303
M. Craig and
A. R. Humphries and
M. C. Mackey A Mathematical Model of Granulopoiesis
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Dynamics and Kinetics of G-CSF\slash
Neutrophil Binding and Internalization 2304--2357
Samuel Bernard Moving the Boundaries of Granulopoiesis
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J. Mushanyu and
F. Nyabadza and
G. Muchatibaya and
A. G. R. Stewart Modelling Drug Abuse Epidemics in the
Presence of Limited Rehabilitation
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David F. Anderson and
Simon L. Cotter Product-Form Stationary Distributions
for Deficiency Zero Networks with
Non-mass Action Kinetics . . . . . . . . 2390--2407
Rodrick Wallace Environmental Induction of
Neurodevelopmental Disorders . . . . . . 2408--2426
Tom Britton and
David Juher and
Joan Saldaña A Network Epidemic Model with Preventive
Rewiring: Comparative Analysis of the
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Brodie A. J. Lawson and
Graeme J. Pettet Space-Limited Mitosis in the
Glazier--Graner--Hogeweg Model . . . . . 1--20
Qiang-Hui Guo and
Lisa Hui Sun and
Jian Wang Regular Simple Queues of Protein Contact
Maps . . . . . . . . . . . . . . . . . . 21--35
Jason Bintz and
Suzanne Lenhart and
Cristina Lanzas Antimicrobial Stewardship and
Environmental Decontamination for the
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G. An and
B. G. Fitzpatrick and
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P. Federico and
A. Kanarek and
R. Miller Neilan and
M. Oremland and
R. Salinas and
R. Laubenbacher and
S. Lenhart Optimization and Control of Agent-Based
Models in Biology: a Perspective . . . . 63--87
Eric Numfor and
Frank M. Hilker and
Suzanne Lenhart Optimal Culling and Biocontrol in a
Predator--Prey Model . . . . . . . . . . 88--116
David S. Ross and
Khamir Mehta and
Antonio Cabal Mathematical Model of Bone Remodeling
Captures the Antiresorptive and Anabolic
Actions of Various Therapies . . . . . . 117--142
Camilla Fiorini Optimization of Running Strategies
According to the Physiological
Parameters for a Two-Runners Model . . . 143--162
Jing Li and
Darla V. Lindberg and
Rachel A. Smith and
Timothy C. Reluga Provisioning of Public Health Can Be
Designed to Anticipate Public Policy
Responses . . . . . . . . . . . . . . . 163--190
Anna Seigal and
Portia Mira and
Bernd Sturmfels and
Miriam Barlow Does Antibiotic Resistance Evolve in
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Nikolaos Sfakianakis and
Niklas Kolbe and
Nadja Hellmann and
Mária Luká\vcová-Medvid'ová A Multiscale Approach to the Migration
of Cancer Stem Cells: Mathematical
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K. Storey and
M. D. Ryser and
K. Leder and
J. Foo Spatial Measures of Genetic
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Sun-Ho Choi and
Yong-Jung Kim A Discrete Velocity Kinetic Model with
Food Metric: Chemotaxis Traveling Waves 277--302
C. M. Saad-Roy and
P. van den Driessche and
Abdul-Aziz Yakubu A Mathematical Model of Anthrax
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Hayriye Gulbudak and
Vincent L. Cannataro and
Necibe Tuncer and
Maia Martcheva Vector-Borne Pathogen and Host Evolution
in a Structured Immuno--Epidemiological
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Matthew Lewis and
James Powell Yeast for Mathematicians: a Ferment of
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Philip K. Maini and
Hans G. Othmer and
Andreas Deutsch Obituary: Hans Meinhardt (1938--2016) 383--388
Lu Peng and
Dumitru Trucu and
Ping Lin and
Alastair Thompson and
Mark A. J. Chaplain A Multiscale Mathematical Model of
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Virginie Ravigné and
Valérie Lemesle and
Alicia Walter and
Ludovic Mailleret and
Frédéric M. Hamelin Mate Limitation in Fungal Plant
Parasites Can Lead to Cyclic Epidemics
in Perennial Host Populations . . . . . 430--447
Lin Lin and
Hans G. Othmer Improving Parameter Inference from FRAP
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D. L. Humphries and
J. A. Grogan and
E. A. Gaffney Mechanical Cell--Cell Communication in
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Richard Kollár and
Sebastian Novak Existence of Traveling Waves for the
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Li Zhang and
Fan Zhang and
Shigui Ruan Linear and Weakly Nonlinear Stability
Analyses of Turing Patterns for
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Lakshmi Machineni and
Anil Rajapantul and
Vandana Nandamuri and
Parag D. Pawar Influence of Nutrient Availability and
Quorum Sensing on the Formation of
Metabolically Inactive Microcolonies
Within Structurally Heterogeneous
Bacterial Biofilms: an Individual-Based
$3$D Cellular Automata Model . . . . . . 594--618
Jeremy G. Sumner Dimensional Reduction for the General
Markov Model on Phylogenetic Trees . . . 619--634
Timmy Ma and
Natalia L. Komarova Mathematical Modeling of Learning from
an Inconsistent Source: a Nonlinear
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Nathaniel J. Karst and
John B. Geddes and
Russell T. Carr Model Microvascular Networks Can Have
Many Equilibria . . . . . . . . . . . . 662--681
Qi Zheng Toward a Unique Definition of the
Mutation Rate . . . . . . . . . . . . . 683--692
Kenneth Y. Wertheim and
Tiina Roose A Mathematical Model of
Lymphangiogenesis in a Zebrafish Embryo 693--737
Noble J. Malunguza and
Senelani D. Hove-Musekwa and
Zindoga Mukandavire Assessing the Potential Impact of
Hormonal-Based Contraceptives on HIV
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E. Penelope Holland and
Julie Mugford and
Rachelle N. Binny and
Alex James How Herbivore Browsing Strategy Affects
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Daljit Singh J. Dhillon and
Michel C. Milinkovitch and
Matthias Zwicker Bifurcation Analysis of Reaction
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Nathan G. Marculis and
Roger Lui and
Mark A. Lewis Neutral Genetic Patterns for Expanding
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José Martins and
Alberto Pinto Bistability of Evolutionary Stable
Vaccination Strategies in the
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Jia Zhao and
Qi Wang Three-Dimensional Numerical Simulations
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Julien Baste and
Christophe Paul and
Ignasi Sau and
Celine Scornavacca Efficient FPT Algorithms for (Strict)
Compatibility of Unrooted Phylogenetic
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Joe Collis and
Anthony J. Connor and
Marcin Paczkowski and
Pavitra Kannan and
Joe Pitt-Francis and
Helen M. Byrne and
Matthew E. Hubbard Bayesian Calibration, Validation and
Uncertainty Quantification for
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Stefan Forcey and
Logan Keefe and
William Sands Split-Facets for Balanced Minimal
Evolution Polytopes and the
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Daniel A. Korytowski and
Hal Smith Permanence and Stability of a Kill the
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Annwesha Dutta and
Debashish Chowdhury A Generalized Michaelis--Menten Equation
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Wang Jin and
Esha T. Shah and
Catherine J. Penington and
Scott W. McCue and
Philip K. Maini and
Matthew J. Simpson Logistic Proliferation of Cells in
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Martin Golubitsky and
Wenrui Hao and
King-Yeung Lam and
Yuan Lou Dimorphism by Singularity Theory in a
Model for River Ecology . . . . . . . . 1051--1069
Fabio Della Rossa and
Fabio Dercole and
Cristina Vicini Extreme Selection Unifies Evolutionary
Game Dynamics in Finite and Infinite
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Indrajit Ghosh and
Tridip Sardar and
Joydev Chattopadhyay A Mathematical Study to Control Visceral
Leishmaniasis: an Application to South
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Vincent Moulton and
Eveline de Swart and
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Xiunan Wang and
Xiao-Qiang Zhao A Malaria Transmission Model with
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Bashar Ibrahim A Mathematical Framework for
Kinetochore-Driven Activation Feedback
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Alexandra B. Hogan and
Mary R. Myerscough A Model for the Spread of an Invasive
Weed, Tradescantia fluminensis . . . . . 1201--1217
Vardayani Ratti and
Peter G. Kevan and
Hermann J. Eberl A Mathematical Model of Forager Loss in
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H. T. Banks and
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R. A. Everett and
Lyric Stephenson and
Sijing Shao and
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Olga Vasilyeva Competition of Multiple Species in
Advective Environments . . . . . . . . . 1274--1294
Vehpi Yildirim and
Richard Bertram Calcium Oscillation Frequency-Sensitive
Gene Regulation and Homeostatic
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Xiaoying Wang and
Xingfu Zou Modeling the Fear Effect in
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Cicik Alfiniyah and
Martin A. Bees and
A. Jamie Wood Pulse Generation in the Quorum Machinery
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Bo Deng Alternative Models to Hodgkin--Huxley
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Kathleen P. Wilkie and
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Mette S. Olufsen and
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Michael H. Cortez and
Swati Patel The Effects of Predator Evolution and
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Brian Ingalls and
Maya Mincheva and
Marc R. Roussel Parametric Sensitivity Analysis of
Oscillatory Delay Systems with an
Application to Gene Regulation . . . . . 1539--1563
Anna K. Miller and
Karl Munger and
Frederick R. Adler A Mathematical Model of Cell Cycle
Dysregulation Due to Human
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M. I. Betti and
L. M. Wahl and
M. Zamir Reproduction Number and Asymptotic
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Mustafa Erdem and
Muntaser Safan and
Carlos Castillo-Chavez Mathematical Analysis of an SIQR
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Roberta Regina Delboni and
Hyun Mo Yang Mathematical Model of Interaction
Between Bacteriocin-Producing Lactic
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1: Steady States and Thresholds . . . . 1637--1661
Michael Marcondes de Freitas and
Carsten Wiuf and
Elisenda Feliu Intermediates and Generic Convergence to
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Tom Britton and
David Juher and
Joan Saldaña Erratum to: a Network Epidemic Model
with Preventive Rewiring: Comparative
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S. Catozzi and
J.-A. Sepulchre A Discrete Dynamical System Approach to
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Cascades . . . . . . . . . . . . . . . . 1691--1735
Asim Timalsina and
Jianjun Paul Tian and
Jin Wang Mathematical and Computational Modeling
for Tumor Virotherapy with Mediated
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Elena Braverman and
Daniel Franco Stabilization of Structured Populations
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Andy Jenkins and
Matthew Macauley Bistability and Asynchrony in a Boolean
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Elena Fimmel and
Christian J. Michel and
Lutz Strüngmann Strong Comma-Free Codes in Genetic
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Julia Pulwicki and
David Hobill The Dynamics of Root Growth: a Geometric
Model . . . . . . . . . . . . . . . . . 1820--1845
Christopher Mitchell and
Christopher Kribs A Comparison of Methods for Calculating
the Basic Reproductive Number for
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Karen M. Hampson and
Matthew P. Cufflin and
Edward A. H. Mallen Sensitivity of Chaos Measures in
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Mechanism of the Short-Sighted Eye . . . 1870--1887
Alexander P. Browning and
Scott W. McCue and
Matthew J. Simpson A Bayesian Computational Approach to
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Sara L. Loo and
Matthew H. Chan and
Kristen Hawkes and
Peter S. Kim Further Mathematical Modelling of Mating
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Relevance to Human Life History . . . . 1907--1922
Cole Zmurchok and
Tim Small and
Michael J. Ward and
Leah Edelstein-Keshet Application of Quasi--Steady-State
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Junehyuk Lee and
Frederick R. Adler and
Peter S. Kim A Mathematical Model for the Macrophage
Response to Respiratory Viral Infection
in Normal and Asthmatic Conditions . . . 1979--1998
Milliward Maliyoni and
Faraimunashe Chirove and
Holly D. Gaff and
Keshlan S. Govinder A Stochastic Tick-Borne Disease Model:
Exploring the Probability of Pathogen
Persistence . . . . . . . . . . . . . . 1999--2021
P. Gambette and
K. T. Huber and
G. E. Scholz Uprooted Phylogenetic Networks . . . . . 2022--2048
P. Magal and
A. Noussair and
J. Pasquier and
P. Zongo and
F. Le Foll A Model for Transfer of P-Glycoproteins
in MCF-7 Breast Cancer Cell Line with
Multiple Transfer Rules . . . . . . . . 2049--2067
Maria Gaivão and
Francisco Dionisio and
Erida Gjini Transmission Fitness in Co-colonization
and the Persistence of Bacterial
Pathogens . . . . . . . . . . . . . . . 2068--2087
Ingemar Nåsell An Alternative to Moment Closure . . . . 2088--2108
Chayu Yang and
Xueying Wang and
Daozhou Gao and
Jin Wang Impact of Awareness Programs on Cholera
Dynamics: Two Modeling Approaches . . . 2109--2131
Matthew H. Chan and
Kristen Hawkes and
Peter S. Kim Modelling the Evolution of Traits in a
Two-Sex Population, with an Application
to Grandmothering . . . . . . . . . . . 2132--2148
Xiaojing Wang and
Yangyang Shi and
Zhilan Feng and
Jingan Cui Evaluations of Interventions Using
Mathematical Models with Exponential and
Non-exponential Distributions for
Disease Stages: The Case of Ebola . . . 2149--2173
Frank M. Hilker and
Marta Paliga and
Ezio Venturino Diseased Social Predators . . . . . . . 2175--2196
K. Minors and
J. H. P. Dawes Invasions Slow Down or Collapse in the
Presence of Reactive Boundaries . . . . 2197--2214
Ryan M. Evans and
David A. Edwards Transport Effects on Multiple-Component
Reactions in Optical Biosensors . . . . 2215--2241
Angus McLure and
Archie C. A. Clements and
Martyn Kirk and
Kathryn Glass Healthcare-Associated Clostridium
difficile Infections are Sustained by
Disease from the Community . . . . . . . 2242--2257
Angela M. Jarrett and
N. G. Cogan and
M. Y. Hussaini Combining Two Methods of Global
Sensitivity Analysis to Investigate MRSA
Nasal Carriage Model . . . . . . . . . . 2258--2272
Roberta Regina Delboni and
Hyun Mo Yang Mathematical Model of Interaction
Between Bacteriocin-Producing Lactic
Acid Bacteria and \bionameListeria. Part
2: Bifurcations and Applications . . . . 2273--2301
Lawrence Kurowski and
Andrew L. Krause and
Hanako Mizuguchi and
Peter Grindrod and
Robert A. Van Gorder Two-Species Migration and Clustering in
Two-Dimensional Domains . . . . . . . . 2302--2333
Gilles Didier Time-Dependent-Asymmetric-Linear-Parsimonious Ancestral State Reconstruction 2334--2355
Mathieu Leroy-Lerêtre and
Giacomo Dimarco and
Martine Cazales and
Marie-Laure Boizeau and
Bernard Ducommun and
Valérie Lobjois and
Pierre Degond Are Tumor Cell Lineages Solely Shaped by
Mechanical Forces? . . . . . . . . . . . 2356--2393
Matthew Becker and
Doron Levy Modeling the Transfer of Drug Resistance
in Solid Tumors . . . . . . . . . . . . 2394--2412
Mike Mesterton-Gibbons and
Yao Dai and
Marl\`ene Goubault and
Ian C. W. Hardy Volatile Chemical Emission as a Weapon
of Rearguard Action: a Game-Theoretic
Model of Contest Behavior . . . . . . . 2413--2449
Leila Shafaghati and
Zahra Razaghi-Moghadam and
Javad Mohammadnejad A Systems Biology Approach to
Understanding Alcoholic Liver Disease
Molecular Mechanism: The Development of
Static and Dynamic Models . . . . . . . 2450--2473
D. Fong and
L. J. Cummings Mathematical Modeling of
Ischemia--Reperfusion Injury and
Postconditioning Therapy . . . . . . . . 2474--2511
Aurélie Edwards and
Anita T. Layton Cell Volume Regulation in the Proximal
Tubule of Rat Kidney . . . . . . . . . . 2512--2533
Michael Reed and
Janet Best and
Martin Golubitsky and
Ian Stewart and
H. Frederik Nijhout Analysis of Homeostatic Mechanisms in
Biochemical Networks . . . . . . . . . . 2534--2557
Josef Dolejs Modeling Human Mortality from All
Diseases in the Five Most Populated
Countries of the European Union . . . . 2558--2598
Gaoyang Fan and
Paul C. Bressloff Population Model of Quorum Sensing with
Multiple Parallel Pathways . . . . . . . 2599--2626
Erica M. Rutter and
H. T. Banks and
Gerald A. LeBlanc and
Kevin B. Flores Continuous Structured Population Models
for \bionameDaphnia magna . . . . . . . 2627--2648
Ana-Maria Croicu and
Angela M. Jarrett and
N. G. Cogan and
M. Yousuff Hussaini Short-Term Antiretroviral Treatment
Recommendations Based on Sensitivity
Analysis of a Mathematical Model for HIV
Infection of CD4$^+$T Cells . . . . . . 2649--2671
Lina Meinecke Multiscale Modeling of Diffusion in a
Crowded Environment . . . . . . . . . . 2672--2695
Duan Chen Fractional Poisson--Nernst--Planck Model
for Ion Channels I: Basic Formulations
and Algorithms . . . . . . . . . . . . . 2696--2726
Carles Barril and
\`Angel Calsina and
Jordi Ripoll On the Reproduction Number of a Gut
Microbiota Model . . . . . . . . . . . . 2727--2746
Glenn Ledder Scaling for Dynamical Systems in Biology 2747--2772
Gerardo Severino and
Francesco Giannino and
Fabrizio Cartení and
Stefano Mazzoleni and
Daniel M. Tartakovsky Effects of Hydraulic Soil Properties on
Vegetation Pattern Formation in Sloping
Landscapes . . . . . . . . . . . . . . . 2773--2784
Samuel David Keyes and
Konstantinos C. Zygalakis and
Tiina Roose An Explicit Structural Model of Root
Hair and Soil Interactions Parameterised
by Synchrotron X-ray Computed Tomography 2785--2813
M. R. Stapf and
R. J. Braun and
P. E. King-Smith Duplex Tear Film Evaporation Analysis 2814--2846
Esteban Vargas Bernal and
Camilo Sanabria Malagon Modeling Sexual Selection in Túngara Frog
and Rationality of Mate Choice . . . . . 2847--2864
Lina Herbst and
Mareike Fischer Ancestral Sequence Reconstruction with
Maximum Parsimony . . . . . . . . . . . 2865--2886
Evan Milliken The Probability of Extinction of
Infectious Salmon Anemia Virus in One
and Two Patches . . . . . . . . . . . . 2887--2904
Christian A. Yates and
Matthew J. Ford and
Richard L. Mort A Multi-stage Representation of Cell
Proliferation as a Markov Process . . . 2905--2928
Adrien Mazoyer Time Inhomogeneous Mutation Models with
Birth Date Dependence . . . . . . . . . 2929--2953
Yu Jin and
Frithjof Lutscher and
Yuan Pei Meandering Rivers: How Important is
Lateral Variability for Species
Persistence? . . . . . . . . . . . . . . 2954--2985
Heyrim Cho and
Doron Levy Modeling the Dynamics of Heterogeneity
of Solid Tumors in Response to
Chemotherapy . . . . . . . . . . . . . . 2986--3012
Kelin Xia and
Zhiming Li and
Lin Mu Multiscale Persistent Functions for
Biomolecular Structure Characterization 1--31
Paul Flondor and
Mircea Olteanu and
Radu \cStefan Qualitative Analysis of an ODE Model of
a Class of Enzymatic Reactions . . . . . 32--45
James Moore and
Hasan Ahmed and
Jonathan Jia and
Rama Akondy and
Rafi Ahmed and
Rustom Antia What Controls the Acute Viral Infection
Following Yellow Fever Vaccination? . . 46--63
Elizabeth S. Allman and
James H. Degnan and
John A. Rhodes Split Probabilities and Species Tree
Inference Under the Multispecies
Coalescent Model . . . . . . . . . . . . 64--103
Ján Elia\vs Trend to Equilibrium for a
Reaction--Diffusion System Modelling
Reversible Enzyme Reaction . . . . . . . 104--129
L. M. Bilinsky and
S. M. Baer Slow Passage Through a Hopf Bifurcation
in Excitable Nerve Cables: Spatial
Delays and Spatial Memory Effects . . . 130--150
Irina Kareva and
Georgy Karev From Experiment to Theory: What Can We
Learn from Growth Curves? . . . . . . . 151--174
Moritz P. Thon and
Hugh Z. Ford and
Michael W. Gee and
Mary R. Myerscough A Quantitative Model of Early
Atherosclerotic Plaques Parameterized
Using In Vitro Experiments . . . . . . . 175--214
Daisuke Takagi and
Daniel K. Hartline Directional Hydrodynamic Sensing by
Free-Swimming Organisms . . . . . . . . 215--227
Ozgur Aydogmus Phase Transitions in a Logistic
Metapopulation Model with Nonlocal
Interactions . . . . . . . . . . . . . . 228--253
Elías Vera-Sigüenza and
Marcelo A. Catalán and
Gaspar Peña-Münzenmayer and
James E. Melvin and
James Sneyd A Mathematical Model Supports a Key Role
for Ae4 (Slc4a9) in Salivary Gland
Secretion . . . . . . . . . . . . . . . 255--282
Farinaz Forouzannia and
Heiko Enderling and
Mohammad Kohandel Mathematical Modeling of the Effects of
Tumor Heterogeneity on the Efficiency of
Radiation Treatment Schedule . . . . . . 283--293
Ismail Belgacem and
Stefano Casagranda and
Edith Grac and
Delphine Ropers and
Jean-Luc Gouzé Reduction and Stability Analysis of a
Transcription--Translation Model of RNA
Polymerase . . . . . . . . . . . . . . . 294--318
U. U. Jamilov and
A. Yu. Khamraev and
M. Ladra On a Volterra Cubic Stochastic Operator 319--334
Axel A. Almet and
Barry D. Hughes and
Kerry A. Landman A Multicellular Model of Intestinal
Crypt Buckling and Fission . . . . . . . 335--359
Svetoslav Nikolov and
Guido Santos and
Olaf Wolkenhauer and
Julio Vera Model-Based Phenotypic Signatures
Governing the Dynamics of the Stem and
Semi-differentiated Cell Populations in
Dysplastic Colonic Crypts . . . . . . . 360--384
Qiang-Hui Guo and
Lisa H. Sun Combinatorics of Contacts in Protein
Contact Maps . . . . . . . . . . . . . . 385--403
A. Francis and
K. T. Huber and
V. Moulton Tree-Based Unrooted Phylogenetic
Networks . . . . . . . . . . . . . . . . 404--416
Eduardo Liz A Global Picture of the Gamma--Ricker
Map: a Flexible Discrete-Time Model with
Factors of Positive and Negative Density
Dependence . . . . . . . . . . . . . . . 417--434
Cole Zmurchok and
Tim Small and
Michael J. Ward and
Leah Edelstein-Keshet Correction to: Application of
Quasi-Steady-State Methods to Nonlinear
Models of Intracellular Transport by
Molecular Motors . . . . . . . . . . . . 435--435
A. Nwankwo and
D. Okuonghae Mathematical Analysis of the
Transmission Dynamics of HIV Syphilis
Co-infection in the Presence of
Treatment for Syphilis . . . . . . . . . 437--492
Volkmar Liebscher New Gromov--Inspired Metrics on
Phylogenetic Tree Space . . . . . . . . 493--518
Leonid Hanin and
Jason Rose Suppression of Metastasis by Primary
Tumor and Acceleration of Metastasis
Following Primary Tumor Resection: a
Natural Law? . . . . . . . . . . . . . . 519--539
Wei Wang and
Tongqian Zhang Caspase-$1$-Mediated Pyroptosis of the
Predominance for Driving CD$_4^+$ T
Cells Death: a Nonlocal Spatial
Mathematical Model . . . . . . . . . . . 540--582
Seunggyu Lee Mathematical Model of Contractile
Ring-Driven Cytokinesis in a
Three-Dimensional Domain . . . . . . . . 583--597
Wencel Valega-Mackenzie and
Karen R. Ríos-Soto Can Vaccination Save a Zika Virus
Epidemic? . . . . . . . . . . . . . . . 598--625
Maitri Verma and
A. K. Misra Modeling the Effect of Prey Refuge on a
Ratio-Dependent Predator--Prey System
with the Allee Effect . . . . . . . . . 626--656
Sarder Mohammed Asaduzzaman and
Junling Ma and
P. van den Driessche Estimation of Cross-Immunity Between
Drifted Strains of Influenza A/H3N2 . . 657--669
Josh Hiller and
James Keesling Asymptotic Relative Risk Results from a
Simplified Armitage and Doll Model of
Carcinogenesis . . . . . . . . . . . . . 670--686
Joel Nishimura and
Rebecca Smith and
Kathleen Jensen and
Gerald Ankley and
Karen Watanabe Estimating Intermittent Individual
Spawning Behavior via Disaggregating
Group Data . . . . . . . . . . . . . . . 687--700
Arran Hodgkinson and
Mark A. J. Chaplain and
Pia Domschke and
Dumitru Trucu Computational Approaches and Analysis
for a Spatio--Structural-Temporal
Invasive Carcinoma Model . . . . . . . . 701--737
Oleksii M. Matsiaka and
Catherine J. Penington and
Ruth E. Baker and
Matthew J. Simpson Discrete and Continuum Approximations
for Collective Cell Migration in a
Scratch Assay with Cell Size Dynamics 738--757
Matthew P. Edgington and
Marcus J. Tindall Mathematical Analysis of the
\bionameEscherichia coli Chemotaxis
Signalling Pathway . . . . . . . . . . . 758--787
Bismark Oduro and
Mario J. Grijalva and
Winfried Just Models of Disease Vector Control: When
Can Aggressive Initial Intervention
Lower Long-Term Cost? . . . . . . . . . 788--824
E. Iboi and
K. Okuneye and
O. Sharomi and
A. B. Gumel Comments on ``A Mathematical Study to
Control Visceral Leishmaniasis: an
Application to South Sudan'' . . . . . . 825--839
Juping Zhang and
Chris Cosner and
Huaiping Zhu Two-patch model for the spread of West
Nile virus . . . . . . . . . . . . . . . 840--863
Lina Herbst and
Mareike Fischer On the Accuracy of Ancestral Sequence
Reconstruction for Ultrametric Trees
with Parsimony . . . . . . . . . . . . . 864--879
Minu R. Pilvankar and
Michele A. Higgins and
Ashlee N. Ford Versypt Mathematical Model for Glucose
Dependence of the Local
Renin--Angiotensin System in Podocytes 880--905
S. Pal and
S. Ghorai and
M. Banerjee Analysis of a Prey--Predator Model with
Non-local Interaction in the Prey
Population . . . . . . . . . . . . . . . 906--925
Barbara Bennie and
Eric Alan Eager and
James P. Peirce and
Gregory J. Sandland Using a Summer REU to Help Develop the
Next Generation of Mathematical
Ecologists . . . . . . . . . . . . . . . 926--944
Alexander R. A. Anderson and
Philip K. Maini Mathematical Oncology . . . . . . . . . 945--953
Curtis A. Gravenmier and
Miriam Siddique and
Robert A. Gatenby Adaptation to Stochastic Temporal
Variations in Intratumoral Blood Flow:
The Warburg Effect as a Bet Hedging
Strategy . . . . . . . . . . . . . . . . 954--970
Harsh Jain and
Trachette Jackson Mathematical Modeling of Cellular
Cross-Talk Between Endothelial and Tumor
Cells Highlights Counterintuitive
Effects of VEGF-Targeted Therapies . . . 971--1016
Chiara Giverso and
Alessandro Arduino and
Luigi Preziosi How Nucleus Mechanics and ECM
Microstructure Influence the Invasion of
Single Cells and Multicellular
Aggregates . . . . . . . . . . . . . . . 1017--1045
Arturo Araujo and
Leah M. Cook and
Conor C. Lynch and
David Basanta Size Matters: Metastatic Cluster Size
and Stromal Recruitment in the
Establishment of Successful Prostate
Cancer to Bone Metastases . . . . . . . 1046--1058
Anne Talkington and
Claudia Dantoin and
Rick Durrett Ordinary Differential Equation Models
for Adoptive Immunotherapy . . . . . . . 1059--1083
Apollos Besse and
Geoffrey D. Clapp and
Samuel Bernard and
Franck E. Nicolini and
Doron Levy and
Thomas Lepoutre Stability Analysis of a Model of
Interaction Between the Immune System
and Cancer Cells in Chronic Myelogenous
Leukemia . . . . . . . . . . . . . . . . 1084--1110
Avner Friedman and
Wenrui Hao The Role of Exosomes in Pancreatic
Cancer Microenvironment . . . . . . . . 1111--1133
Stefan Hoehme and
François Bertaux and
William Weens and
Bettina Grasl-Kraupp and
Jan G. Hengstler and
Dirk Drasdo Model Prediction and Validation of an
Order Mechanism Controlling the
Spatiotemporal Phenotype of Early
Hepatocellular Carcinoma . . . . . . . . 1134--1171
Andrijana Burazin and
Corina S. Drapaca and
Giuseppe Tenti and
Siv Sivaloganathan A Poroelasticity Theory Approach to
Study the Mechanisms Leading to Elevated
Interstitial Fluid Pressure in Solid
Tumours . . . . . . . . . . . . . . . . 1172--1194
Jan Poleszczuk and
Rachel Walker and
Eduardo G. Moros and
Kujtim Latifi and
Jimmy J. Caudell and
Heiko Enderling Predicting Patient-Specific Radiotherapy
Protocols Based on Mathematical Model
Choice for Proliferation Saturation
Index . . . . . . . . . . . . . . . . . 1195--1206
Thomas D. Lewin and
Philip K. Maini and
Eduardo G. Moros and
Heiko Enderling and
Helen M. Byrne The Evolution of Tumour Composition
During Fractionated Radiotherapy:
Implications for Outcome . . . . . . . . 1207--1235
Katherine S. Williams and
Timothy W. Secomb and
Ardith W. El-Kareh Additive Damage Models for Cellular
Pharmacodynamics of
Radiation--Chemotherapy Combinations . . 1236--1258
Amanda Swan and
Thomas Hillen and
John C. Bowman and
Albert D. Murtha A Patient-Specific Anisotropic Diffusion
Model for Brain Tumour Spread . . . . . 1259--1291
Susan Christine Massey and
Russell C. Rockne and
Andrea Hawkins-Daarud and
Jill Gallaher and
Alexander R. A. Anderson and
Peter Canoll and
Kristin R. Swanson Simulating PDGF-Driven Glioma Growth and
Invasion in an Anatomically Accurate
Brain Domain . . . . . . . . . . . . . . 1292--1309
Michelle L. Wynn and
Megan Egbert and
Nikita Consul and
Jungsoo Chang and
Zhi-Fen Wu and
Sofia D. Meravjer and
Santiago Schnell Inferring Intracellular Signal
Transduction Circuitry from Molecular
Perturbation Experiments . . . . . . . . 1310--1344
Natalia L. Komarova and
P. van den Driessche Stability of Control Networks in
Autonomous Homeostatic Regulation of
Stem Cell Lineages . . . . . . . . . . . 1345--1365
Zuzanna Szyma\'nska and
Maciej Cytowski and
Elaine Mitchell and
Cicely K. Macnamara and
Mark A. J. Chaplain Computational Modelling of Cancer
Development and Growth: Modelling at
Multiple Scales and Multiscale Modelling 1366--1403
Huaming Yan and
Anna Konstorum and
John S. Lowengrub Three-Dimensional Spatiotemporal
Modeling of Colon Cancer Organoids
Reveals that Multimodal Control of Stem
Cell Self-Renewal is a Critical
Determinant of Size and Shape in Early
Stages of Tumor Growth . . . . . . . . . 1404--1433
Tanvi V. Joshi and
Daniele Avitabile and
Markus R. Owen Capturing the Dynamics of a Hybrid
Multiscale Cancer Model with a Continuum
Model . . . . . . . . . . . . . . . . . 1435--1475
Garrett Otto and
Sharon Bewick and
Bingtuan Li and
William F. Fagan How Phenological Variation Affects
Species Spreading Speeds . . . . . . . . 1476--1513
Thomas J. X. Li and
Christian M. Reidys The Rainbow Spectrum of RNA Secondary
Structures . . . . . . . . . . . . . . . 1514--1538
Fiona R. Macfarlane and
Tommaso Lorenzi and
Mark A. J. Chaplain Modelling the Immune Response to Cancer:
an Individual-Based Approach Accounting
for the Difference in Movement Between
Inactive and Activated T Cells . . . . . 1539--1562
Stefan Grünewald and
Yangjing Long and
Yaokun Wu Reconstructing Unrooted Phylogenetic
Trees from Symbolic Ternary Metrics . . 1563--1577
John Lagergren and
Amanda Reeder and
Franz Hamilton and
Ralph C. Smith and
Kevin B. Flores Forecasting and Uncertainty
Quantification Using a Hybrid of
Mechanistic and Non-mechanistic Models
for an Age-Structured Population Model 1578--1595
Irina Bashkirtseva and
Lev Ryashko Stochastic Sensitivity Analysis of
Noise-Induced Extinction in the Ricker
Model with Delay and Allee Effect . . . 1596--1614
Adrianne L. Jenner and
Chae-Ok Yun and
Peter S. Kim and
Adelle C. F. Coster Mathematical Modelling of the
Interaction Between Cancer Cells and an
Oncolytic Virus: Insights into the
Effects of Treatment Protocols . . . . . 1615--1629
Suzanne M. O'Regan and
Danielle L. Burton How Stochasticity Influences Leading
Indicators of Critical Transitions . . . 1630--1654
N. Rodríguez and
G. Malanson Plant Dynamics, Birth--Jump Processes,
and Sharp Traveling Waves . . . . . . . 1655--1687
Joseba Dalmau Asymptotic Behavior of Eigen's
Quasispecies Model . . . . . . . . . . . 1689--1712
Chiu-Ju Lin and
Lin Wang and
Gail S. K. Wolkowicz An Alternative Formulation for a
Distributed Delayed Logistic Equation 1713--1735
Maryam Ghasemi and
Burkhard A. Hense and
Hermann J. Eberl and
Christina Kuttler Simulation-Based Exploration of Quorum
Sensing Triggered Resistance of Biofilms
to Antibiotics . . . . . . . . . . . . . 1736--1775
Nara Yoon and
Robert Vander Velde and
Andriy Marusyk and
Jacob G. Scott Optimal Therapy Scheduling Based on a
Pair of Collaterally Sensitive Drugs . . 1776--1809
Derdei Bichara and
Abderrahman Iggidr and
Laura Smith Multi-stage Vector-Borne Zoonoses
Models: a Global Analysis . . . . . . . 1810--1848
Serena Dipierro and
Enrico Valdinoci A Simple Mathematical Model Inspired by
the Purkinje Cells: From Delayed
Travelling Waves to Fractional Diffusion 1849--1870
Pavol Bokes and
Yen Ting Lin and
Abhyudai Singh High Cooperativity in Negative Feedback
can Amplify Noisy Gene Expression . . . 1871--1899
Arran Hodgkinson and
Gilles Uzé and
Ovidiu Radulescu and
Dumitru Trucu Signal Propagation in Sensing and
Reciprocating Cellular Systems with
Spatial and Structural Heterogeneity . . 1900--1936
Alex P. Farrell and
James P. Collins and
Amy L. Greer and
Horst R. Thieme Times from Infection to Disease-Induced
Death and their Influence on Final
Population Sizes After Epidemic
Outbreaks . . . . . . . . . . . . . . . 1937--1961
Xiunan Wang and
Xingfu Zou Threshold Dynamics of a
Temperature-Dependent Stage-Structured
Mosquito Population Model with Nested
Delays . . . . . . . . . . . . . . . . . 1962--1987
Pierre Chelle and
Claire Morin and
Aurélie Montmartin and
Mich\`ele Piot and
Michel Cournil and
Brigitte Tardy-Poncet Evaluation and Calibration of In Silico
Models of Thrombin Generation Using
Experimental Data from Healthy and
Haemophilic Subjects . . . . . . . . . . 1989--2025
Yixuan He and
Anita Kodali and
Dorothy I. Wallace Predictive Modeling of Neuroblastoma
Growth Dynamics in Xenograft Model After
Bevacizumab Anti--VEGF Therapy . . . . . 2026--2048
Shanshan Chen and
Michael Small and
Yizhou Tao and
Xinchu Fu Transmission Dynamics of an SIS Model
with Age Structure on Heterogeneous
Networks . . . . . . . . . . . . . . . . 2049--2087
J. Darby Smith and
Scott A. McKinley Assessing the Impact of Electrostatic
Drag on Processive Molecular Motor
Transport . . . . . . . . . . . . . . . 2088--2123
Bin Huang and
Ning Zhong and
Lili Xia and
Guiping Yu and
Hongbao Cao Sparse Representation-Based
Patient-Specific Diagnosis and Treatment
for Esophageal Squamous Cell Carcinoma 2124--2136
Katharina T. Huber and
Vincent Moulton and
Charles Semple and
Taoyang Wu Quarnet Inference Rules for Level-1
Networks . . . . . . . . . . . . . . . . 2137--2153
Konstantin Klemm and
Anita Mehta and
Peter F. Stadler Cover-Encodings of Fitness Landscapes 2154--2176
Remie Janssen and
Mark Jones and
Péter L. Erd\Hos and
Leo van Iersel and
Celine Scornavacca Exploring the Tiers of Rooted
Phylogenetic Network Space Using Tail
Moves . . . . . . . . . . . . . . . . . 2177--2208
Necibe Tuncer and
Maia Marctheva and
Brian LaBarre and
Sabrina Payoute Structural and Practical Identifiability
Analysis of Zika Epidemiological Models 2209--2241
Lester Caudill and
Fiona Lynch A Mathematical Model of the Inflammatory
Response to Pathogen Challenge . . . . . 2242--2271
Ali Mahdipour-Shirayeh and
Leili Shahriyari Modeling Cell Dynamics in Colon and
Intestinal Crypts: The Significance of
Central Stem Cells in Tumorigenesis . . 2273--2305
Elisa Tonello and
Matthew D. Johnston Network Translation and Steady-State
Properties of Chemical Reaction Systems 2306--2337
Charles Semple and
Jack Simpson When is a Phylogenetic Network Simply an
Amalgamation of Two Trees? . . . . . . . 2338--2348
Chloé Pasin and
François Dufour and
Laura Villain and
Huilong Zhang and
Rodolphe Thiébaut Controlling IL-7 Injections in
HIV-Infected Patients . . . . . . . . . 2349--2377
Raul Abreu de Assis and
Luca Pietro Casacci and
Simona Bonelli and
Francesca Barbero and
Luciana Mafalda Elias de Assis and
Ezio Venturino Effects of Host Interspecific
Interaction in the Maculinea--Myrmica
Parasite--Host System . . . . . . . . . 2378--2407
Yuanshi Wang and
Hong Wu and
Shikun Wang and
Wen Shi Dynamics of Intraguild Predation Systems
with Intraspecific Competition . . . . . 2408--2434
Longxing Qi and
Meng Xue and
Jing-an Cui and
Qizhi Wang and
Tianping Wang Schistosomiasis Transmission Model and
its Control in Anhui Province . . . . . 2435--2451
M. H. Kabir and
M. Mimura and
J. C. Tsai Spreading Waves in a Farmers and
Hunter-Gatherers Model of the Neolithic
Transition in Europe . . . . . . . . . . 2452--2480
Julie Simons and
Lisa Fauci A Model for the Acrosome Reaction in
Mammalian Sperm . . . . . . . . . . . . 2481--2501
Hél\`ene Leman A Stochastic Model for Reproductive
Isolation Under Asymmetrical Mating
Preferences . . . . . . . . . . . . . . 2502--2525
Alexandru Hening and
Dang H. Nguyen Persistence in Stochastic
Lotka--Volterra Food Chains with
Intraspecific Competition . . . . . . . 2527--2560
David F. Anderson and
Daniele Cappelletti and
Masanori Koyama and
Thomas G. Kurtz Non-explosivity of Stochastically
Modeled Reaction Networks that are
Complex Balanced . . . . . . . . . . . . 2561--2579
Julia Kobe and
Neil Pritchard and
Ziaqueria Short and
Igor V. Erovenko and
Jan Rychtá\vr and
Jonathan T. Rowell A Game-Theoretic Model of Cholera with
Optimal Personal Protection Strategies 2580--2599
Vasiliki Bitsouni and
Raluca Eftimie Non-local Parabolic and Hyperbolic
Models for Cell Polarisation in
Heterogeneous Cancer Cell Populations 2600--2632
Lan Zou and
Jing Chen and
Xiaomei Feng and
Shigui Ruan Analysis of a Dengue Model with Vertical
Transmission and Application to the 2014
Dengue Outbreak in Guangdong Province,
China . . . . . . . . . . . . . . . . . 2633--2651
Corin Stratton and
Allison Kolpas and
Josh R. Auld Optimal Mating Strategies for
Preferentially Outcrossing Simultaneous
Hermaphrodites in the Presence of
Predators . . . . . . . . . . . . . . . 2652--2668
J. M. Wentz and
A. R. Mendenhall and
D. M. Bortz Pattern Formation in the
Longevity-Related Expression of Heat
Shock Protein-16.2 in
\bionameCaenorhabditis elegans . . . . . 2669--2697
Rosanna C. Barnard and
Istvan Z. Kiss and
Luc Berthouze and
Joel C. Miller Edge-Based Compartmental Modelling of an
SIR Epidemic on a Dual-Layer
Static--Dynamic Multiplex Network with
Tunable Clustering . . . . . . . . . . . 2698--2733
Alex Kasman The Duplexing of the Genetic Code and
Sequence-Dependent DNA Geometry . . . . 2734--2760
Cinthia M. Tanaka and
Joung-Hun Lee and
Yoh Iwasa The Persistence of a Local Dialect When
a National Standard Language is Present:
an Evolutionary Dynamics Model of
Cultural Diversity . . . . . . . . . . . 2761--2786
A. C. Fowler and
T. Déirdre Hollingsworth Correction to: The Dynamics of
\bionameAscaris lumbricoides Infections 2787--2787
Frank M. Hilker and
Marta Paliaga and
Ezio Venturino Correction to: Diseased Social Predators 2788--2788
N. Sfakianakis and
A. Brunk Stability, Convergence, and Sensitivity
Analysis of the FBLM and the
Corresponding FEM . . . . . . . . . . . 2789--2827
Anudeep Surendran and
Michael J. Plank and
Matthew J. Simpson Spatial Moment Description of
Birth--Death-Movement Processes
Incorporating the Effects of Crowding
and Obstacles . . . . . . . . . . . . . 2828--2855
\cStefan \cT\ualu and
Ilya A. Morozov and
Dinara Sobola and
Pavel \vSkarvada Multifractal Characterization of
Butterfly Wings Scales . . . . . . . . . 2856--2870
Damian Clancy Precise Estimates of Persistence Time
for SIS Infections in Heterogeneous
Populations . . . . . . . . . . . . . . 2871--2896
Pablo Amster and
Carlos Alliera Control of Pyragas Applied to a Coupled
System with Unstable Periodic Orbits . . 2897--2916
Majid Latif, Jr. and
Elebeoba E. May A Multiscale Agent-Based Model for the
Investigation of \bionameE. coli K12
Metabolic Response During Biofilm
Formation . . . . . . . . . . . . . . . 2917--2956
Viggo Andreasen Epidemics in Competition: Partial
Cross--Immunity . . . . . . . . . . . . 2957--2977
Fernando Saldaña and
Ignacio Barradas Control Strategies in Multigroup Models:
The Case of the Star Network Topology 2978--3001
Simon P. Pearce and
Matthias Heil and
Oliver E. Jensen and
Gareth Wyn Jones and
Andreas Prokop Curvature-Sensitive Kinesin Binding Can
Explain Microtubule Ring Formation and
Reveals Chaotic Dynamics in a
Mathematical Model . . . . . . . . . . . 3002--3022
A. Rabinovitch and
I. Aviram and
Y. Biton and
D. Braunstein Reentry as an Origin for Rotors . . . . 3023--3037
Sourav Kumar Sasmal and
Indrajit Ghosh and
Amit Huppert and
Joydev Chattopadhyay Modeling the Spread of Zika Virus in a
Stage-Structured Population: Effect of
Sexual Transmission . . . . . . . . . . 3038--3067
Reinhard Laubenbacher and
Alan Hastings Editorial . . . . . . . . . . . . . . . 3069--3070
Gary An The Crisis of Reproducibility, the
Denominator Problem and the Scientific
Role of Multi-scale Modeling . . . . . . 3071--3080
Pedro Mendes Reproducible Research Using Biomodels 3081--3087
David Gavaghan Problems with the Current Approach to
the Dissemination of Computational
Science Research and Its Implications
for Research Integrity . . . . . . . . . 3088--3094
Santiago Schnell ``Reproducible'' Research in
Mathematical Sciences Requires Changes
in our Peer Review Culture and
Modernization of our Current Publication
Approach . . . . . . . . . . . . . . . . 3095--3105
S. Sugaya and
V. M. Kenkre Analysis of Transmission of Infection in
Epidemics: Confined Random Walkers in
Dimensions Higher Than One . . . . . . . 3106--3126
Sha He and
Sanyi Tang and
Yanni Xiao and
Robert A. Cheke Stochastic Modelling of Air Pollution
Impacts on Respiratory Infection Risk 3127--3153
Justin Eilertsen and
Santiago Schnell A Kinetic Analysis of Coupled (or
Auxiliary) Enzyme Reactions . . . . . . 3154--3183
Manon Deville and
Roberto Natalini and
Clair Poignard A Continuum Mechanics Model of
Enzyme-Based Tissue Degradation in
Cancer Therapies . . . . . . . . . . . . 3184--3226
Sangeeta Bhatia and
Pedro Feijão and
Andrew R. Francis Position and Content Paradigms in Genome
Rearrangements: The Wild and Crazy World
of Permutations in Genomics . . . . . . 3227--3246
B. G. Fitzpatrick Issues in Reproducible Simulation
Research . . . . . . . . . . . . . . . . 1--6
Louise A. Bowler and
David J. Gavaghan and
Gary R. Mirams and
Jonathan P. Whiteley Representation of Multiple Cellular
Phenotypes Within Tissue-Level
Simulations of Cardiac Electrophysiology 7--38
L. Zhong and
R. J. Braun and
C. G. Begley and
P. E. King-Smith Dynamics of Fluorescent Imaging for
Rapid Tear Thinning . . . . . . . . . . 39--80
Eduard Campillo-Funollet and
Chandrasekhar Venkataraman and
Anotida Madzvamuse Bayesian Parameter Identification for
Turing Systems on Stationary and
Evolving Domains . . . . . . . . . . . . 81--104
Koyel Chakravarty and
D. C. Dalal A Nonlinear Mathematical Model of Drug
Delivery from Polymeric Matrix . . . . . 105--130
Shaimaa A. Azoz and
Daniel Coombs Stochastic Dynamics of the Latently
Infected Cell Reservoir During HIV
Infection . . . . . . . . . . . . . . . 131--154
Alain R. Véron and
Assis F. Martins Stochastic Mechanochemical Description
of a Bioinspired Polymerization Process 155--192
Carrie A. Manore and
Miranda I. Teboh-Ewungkem and
Olivia Prosper and
Angela Peace and
Katharine Gurski and
Zhilan Feng Intermittent Preventive Treatment (IPT):
Its Role in Averting Disease-Induced
Mortality in Children and in Promoting
the Spread of Antimalarial Drug
Resistance . . . . . . . . . . . . . . . 193--234
Ana-Maria Croicu An Optimal Control Model to Reduce and
Eradicate Anthrax Disease in Herbivorous
Animals . . . . . . . . . . . . . . . . 235--255
Sarah Kadelka and
Brittany P. Boribong and
Liwu Li and
Stanca M. Ciupe Modeling the Bistable Dynamics of the
Innate Immune System . . . . . . . . . . 256--276
E. Haspolat and
B. Huard and
M. Angelova Deterministic and Stochastic Models of
\bionameArabidopsis thaliana Flowering 277--311
Marta Casanellas and
John A. Rhodes Algebraic Methods in Phylogenetics . . . 313--315
Hector Baños and
Nathaniel Bushek and
Ruth Davidson and
Elizabeth Gross and
Pamela E. Harris and
Robert Krone and
Colby Long and
Allen Stewart and
Robert Walker Dimensions of Group-Based Phylogenetic
Mixtures . . . . . . . . . . . . . . . . 316--336
Dimitra Kosta and
Kaie Kubjas Maximum Likelihood Estimation of
Symmetric Group-Based Models via
Numerical Algebraic Geometry . . . . . . 337--360
Jeremy G. Sumner and
Michael D. Woodhams Lie--Markov Models Derived from Finite
Semigroups . . . . . . . . . . . . . . . 361--383
Filippo Disanto and
Noah A. Rosenberg On the Number of Non-equivalent
Ancestral Configurations for Matching
Gene Trees and Species Trees . . . . . . 384--407
Colby Long and
Laura Kubatko Identifiability and Reconstructibility
of Species Phylogenies Under a Modified
Coalescent . . . . . . . . . . . . . . . 408--430
Chris Durden and
Seth Sullivant Identifiability of Phylogenetic
Parameters from $k$-mer Data Under the
Coalescent . . . . . . . . . . . . . . . 431--451
Jaehee Kim and
Filippo Disanto and
Naama M. Kopelman and
Noah A. Rosenberg Mathematical and Simulation-Based
Analysis of the Behavior of Admixed Taxa
in the Neighbor-Joining Algorithm . . . 452--493
Hector Baños Identifying Species Network Features
from Gene Tree Quartets Under the
Coalescent Model . . . . . . . . . . . . 494--534
Venta Terauds and
Jeremy Sumner Maximum Likelihood Estimates of
Rearrangement Distance: Implementing a
Representation-Theoretic Approach . . . 535--567
Ruriko Yoshida and
Leon Zhang and
Xu Zhang Tropical Principal Component Analysis
and Its Application to Phylogenetics . . 568--597
Katharina T. Huber and
Vincent Moulton and
Mike Steel Phylogenetic Flexibility via Hall-Type
Inequalities and Submodularity . . . . . 598--617
Kristina Wicke and
Mareike Fischer On the Shapley Value of Unrooted
Phylogenetic Trees . . . . . . . . . . . 618--638
C. D. Bayliss and
C. Fallaize and
R. Howitt and
M. V. Tretyakov Mutation and Selection in Bacteria:
Modelling and Calibration . . . . . . . 639--675
Alexander P. Browning and
Parvathi Haridas and
Matthew J. Simpson A Bayesian Sequential Learning Framework
to Parameterise Continuum Models of
Melanoma Invasion into Human Skin . . . 676--698
Elías Vera-Sigüenza and
Nathan Pages and
John Rugis and
David I. Yule and
James Sneyd A Mathematical Model of Fluid Transport
in an Accurate Reconstruction of Parotid
Acinar Cells . . . . . . . . . . . . . . 699--721
Stéphane Honoré and
Florence Hubert and
Magali Tournus and
Diana White A Growth--Fragmentation Approach for
Modeling Microtubule Dynamic Instability 722--758
Andrew L. Krause and
Meredith A. Ellis and
Robert A. Van Gorder Influence of Curvature, Growth, and
Anisotropy on the Evolution of Turing
Patterns on Growing Manifolds . . . . . 759--799
P. C. Bressloff and
E. Levien Propagation of Extrinsic Fluctuations in
Biochemical Birth--Death Processes . . . 800--829
Irene Balelli and
Vuk Mili\vsi\'c and
Gilles Wainrib Multi-type Galton--Watson Processes with
Affinity-Dependent Selection Applied to
Antibody Affinity Maturation . . . . . . 830--868
Fred Brauer The Final Size of a Serious Epidemic . . 869--877
Marc Manceau and
Amaury Lambert The Species Problem from the Modeler's
Point of View . . . . . . . . . . . . . 878--898
Farzad Peyravi and
Alimohammad Latif and
Seyed Mohammad Moshtaghioun A Composite Approach to Protein Tertiary
Structure Prediction: Hidden Markov
Model Based on Lattice . . . . . . . . . 899--918
Pranas Katauskis and
Feliksas Ivanauskas and
Aidas Alaburda The ``Memory'' Effect in a Chain of
Biochemical Reactions with a Positive
Feedback is Enhanced by Substrate
Saturation Described by
Michaelis--Menten Kinetics . . . . . . . 919--935
A. Francis and
K. T. Huber and
V. Moulton Correction to: Tree-Based Unrooted
Phylogenetic Networks . . . . . . . . . 936--937
Jicai Huang and
Shigui Ruan and
Yaqin Shu and
Xiao Wu Modeling the Transmission Dynamics of
Rabies for Dog, Chinese Ferret Badger
and Human Interactions in Zhejiang
Province, China . . . . . . . . . . . . 939--962
Aili Wang and
Yanni Xiao and
Robert Smith Multiple Equilibria in a Non-smooth
Epidemic Model with Medical-Resource
Constraints . . . . . . . . . . . . . . 963--994
Andrew M. Bate and
Frank M. Hilker Preytaxis and Travelling Waves in an
Eco-epidemiological Model . . . . . . . 995--1030
Luiza Guimarães Fabreti and
Diogo Castro and
Bruno Gorzoni and
Luiz Mario Ramos Janini and
Fernando Antoneli Stochastic Modeling and Simulation of
Viral Evolution . . . . . . . . . . . . 1031--1069
Yuri Bakhtin Universal Statistics of Incubation
Periods and Other Detection Times via
Diffusion Models . . . . . . . . . . . . 1070--1088
Elisenda Feliu and
Martin Helmer Multistationarity and Bistability for
Fewnomial Chemical Reaction Networks . . 1089--1121
Jonathan Machta and
Julie C. Blackwood and
Andrew Noble and
Andrew M. Liebhold and
Alan Hastings A Hybrid Model for the Population
Dynamics of Periodical Cicadas . . . . . 1122--1142
Matthew D. Johnston and
Stefan Müller and
Casian Pantea A Deficiency-Based Approach to
Parametrizing Positive Equilibria of
Biochemical Reaction Systems . . . . . . 1143--1172
Michelle Galla and
Kristina Wicke and
Mareike Fischer Statistical Inconsistency of Maximum
Parsimony for $k$-Tuple-Site Data . . . 1173--1200
Kenneth Y. Wertheim and
Tiina Roose Can VEGFC Form Turing Patterns in the
Zebrafish Embryo? . . . . . . . . . . . 1201--1237
Jared Barber and
Luoding Zhu Two-dimensional Finite Element Model of
Breast Cancer Cell Motion Through a
Microfluidic Channel . . . . . . . . . . 1238--1259
German Enciso and
Jinsu Kim Embracing Noise in Chemical Reaction
Networks . . . . . . . . . . . . . . . . 1261--1267
Bin Xu and
Hye-Won Kang and
Alexandra Jilkine Comparison of Deterministic and
Stochastic Regime in a Model for Cdc42
Oscillations in Fission Yeast . . . . . 1268--1302
Hye-Won Kang and
Wasiur R. KhudaBukhsh and
Heinz Koeppl and
Grzegorz A. Rempa\la Quasi-Steady-State Approximations
Derived from the Stochastic Model of
Enzyme Kinetics . . . . . . . . . . . . 1303--1336
Ali Mai and
Guowei Sun and
Lin Wang Impacts of the Dispersal Delay on the
Stability of the Coexistence Equilibrium
of a Two-Patch Predator--Prey Model with
Random Predator Dispersal . . . . . . . 1337--1351
Lale Asik and
Angela Peace Dynamics of a Producer--Grazer Model
Incorporating the Effects of Phosphorus
Loading on Grazer's Growth . . . . . . . 1352--1368
Joice Chaves Marques and
Horst Malchow and
Luiz Alberto Díaz Rodrigues and
Diomar Cristina Mistro The Effects of Stochasticity on Pattern
Formation in a Space- and Time--Discrete
Predator--Prey System with Strong Allee
Effect in the Prey . . . . . . . . . . . 1369--1393
Nathan Pages and
Elías Vera-Sigüenza and
John Rugis and
Vivien Kirk and
David I. Yule and
James Sneyd A Model of $ {\rm Ca}^{2+} $ Dynamics in
an Accurate Reconstruction of Parotid
Acinar Cells . . . . . . . . . . . . . . 1394--1426
Kosaku Kitagawa and
Toshikazu Kuniya and
Shinji Nakaoka and
Yusuke Asai and
Koichi Watashi and
Shingo Iwami Mathematical Analysis of a Transformed
ODE from a PDE Multiscale Model of
Hepatitis C Virus Infection . . . . . . 1427--1441
Henning S. Mortveit and
Ryan D. Pederson Attractor Stability in Finite
Asynchronous Biological System Models 1442--1460
Michaël Dougoud and
Christian Mazza and
Beat Schwaller and
László Pecze Extending the Mathematical Palette for
Developmental Pattern Formation:
Piebaldism . . . . . . . . . . . . . . . 1461--1478
Gaoyang Fan and
Paul C. Bressloff Modeling the Role of Feedback in the
Adaptive Response of Bacterial Quorum
Sensing . . . . . . . . . . . . . . . . 1479--1505
Yuewu Liu and
Xiufen Zou A New Model System for Exploring
Assembly Mechanisms of the HIV-1
Immature Capsid In Vivo . . . . . . . . 1506--1526
Alicia Dickenstein and
Mercedes Pérez Millán and
Anne Shiu and
Xiaoxian Tang Multistationarity in Structured Reaction
Networks . . . . . . . . . . . . . . . . 1527--1581
Pengfei Song and
Yanni Xiao Analysis of an Epidemic System with Two
Response Delays in Media Impact Function 1582--1612
Matthew D. Johnston and
Evan Burton Computing Weakly Reversible Deficiency
Zero Network Translations Using
Elementary Flux Modes . . . . . . . . . 1613--1644
Susan Christine Massey and
Andrea Hawkins-Daarud and
Jill Gallaher and
Alexander R. A. Anderson and
Peter Canoll and
Kristin R. Swanson Lesion Dynamics Under Varying Paracrine
PDGF Signaling in Brain Tissue . . . . . 1645--1664
Yuanshi Wang Asymptotic State of a Two-Patch System
with Infinite Diffusion . . . . . . . . 1665--1686
Vanessa Steindorf and
Norberto Aníbal Maidana Modeling the Spatial Spread of Chagas
Disease . . . . . . . . . . . . . . . . 1687--1730
Ciara E. Dangerfield and
Martin Vyska and
Christopher A. Gilligan Resource Allocation for Epidemic Control
Across Multiple Sub-populations . . . . 1731--1759
David J. Warne and
Ruth E. Baker and
Matthew J. Simpson Using Experimental Data and Information
Criteria to Guide Model Selection for
Reaction--Diffusion Problems in
Mathematical Biology . . . . . . . . . . 1760--1804
J. L. Hart and
P. A. Gremaud and
T. David Global Sensitivity Analysis of
High-Dimensional Neuroscience Models: an
Example of Neurovascular Coupling . . . 1805--1828
Carsten Conradi and
Maya Mincheva and
Anne Shiu Emergence of Oscillations in a
Mixed-Mechanism Phosphorylation System 1829--1852
Marissa Renardy and
Timothy Wessler and
Silvia Blemker and
Jennifer Linderman and
Shayn Peirce and
Denise Kirschner Data-Driven Model Validation Across
Dimensions . . . . . . . . . . . . . . . 1853--1866
Marcos Matabuena and
Rosana Rodríguez-López An Improved Version of the Classical
Banister Model to Predict Changes in
Physical Condition . . . . . . . . . . . 1867--1884
Xiaochuan Hu and
Guoyi Ke and
Sophia R.-J. Jang Modeling Pancreatic Cancer Dynamics with
Immunotherapy . . . . . . . . . . . . . 1885--1915
Julien Arino and
Nicolas Bajeux and
Steve Kirkland Number of Source Patches Required for
Population Persistence in a Source--Sink
Metapopulation with Explicit Movement 1916--1942
Eda Asili and
Shantia Yarahmadian and
Hadi Khani and
Meisam Sharify A Mathematical Model for Amyloid-$ \beta
$ Aggregation in the Presence of Metal
Ions: a Timescale Analysis for the
Progress of Alzheimer Disease . . . . . 1943--1964
Linnea C. Franssen and
Tommaso Lorenzi and
Andrew E. F. Burgess and
Mark A. J. Chaplain A Mathematical Framework for Modelling
the Metastatic Spread of Cancer . . . . 1965--2010
Allison K. Shaw and
Morganne Igoe and
Alison G. Power and
Nilsa A. Bosque-Pérez and
Angela Peace Modeling Approach Influences Dynamics of
a Vector-Borne Pathogen System . . . . . 2011--2028
Ignacio Barradas and
Virgilio Vázquez Backward Bifurcation as a Desirable
Phenomenon: Increased Fecundity Through
Infection . . . . . . . . . . . . . . . 2029--2050
Reinhard Laubenbacher and
Alan Hastings Topological Data Analysis . . . . . . . 2051--2051
Min Ho Cho and
Amir Asiaee and
Sebastian Kurtek Elastic Statistical Shape Analysis of
Biological Structures with Case Studies:
a Tutorial . . . . . . . . . . . . . . . 2052--2073
Facundo Mémoli and
Kritika Singhal A Primer on Persistent Homology of
Finite Metric Spaces . . . . . . . . . . 2074--2116
Irina Kareva and
Georgy Karev Natural Selection Between Two Games with
Applications to Game Theoretical Models
of Cancer . . . . . . . . . . . . . . . 2117--2132
Gabriela Jeronimo and
Mercedes Pérez Millán and
Pablo Solernó Identifiability from a Few Species for a
Class of Biochemical Reaction Networks 2133--2175
Robyn Shuttleworth and
Dumitru Trucu Multiscale Modelling of Fibres Dynamics
and Cell Adhesion within Moving Boundary
Cancer Invasion . . . . . . . . . . . . 2176--2219
Alexander Lai De Oliveira and
Benjamin J. Binder Modeling Uniaxial Nonuniform Cell
Proliferation . . . . . . . . . . . . . 2220--2238
P. B\la\.zej and
E. Fimmel and
M. Gumbel The Quality of Genetic Code Models in
Terms of Their Robustness Against Point
Mutations . . . . . . . . . . . . . . . 2239--2257
Nicholas A. Battista and
Leigh B. Pearcy and
W. Christopher Strickland Modeling the Prescription Opioid
Epidemic . . . . . . . . . . . . . . . . 2258--2289
Lukas Eigentler and
Jonathan A. Sherratt Metastability as a Coexistence Mechanism
in a Model for Dryland Vegetation
Patterns . . . . . . . . . . . . . . . . 2290--2322
Anass Bouchnita and
Stefan Hellander and
Andreas Hellander A $3$D Multiscale Model to Explore the
Role of EGFR Overexpression in
Tumourigenesis . . . . . . . . . . . . . 2323--2344
Artur César Fassoni and
Ingo Roeder and
Ingmar Glauche To Cure or Not to Cure: Consequences of
Immunological Interactions in CML
Treatment . . . . . . . . . . . . . . . 2345--2395
Jiantao Zhao and
Jianjun Paul Tian Spatial Model for Oncolytic Virotherapy
with Lytic Cycle Delay . . . . . . . . . 2396--2427
AmirHosein Sadeghimanesh and
Elisenda Feliu The Multistationarity Structure of
Networks with Intermediates and a
Binomial Core Network . . . . . . . . . 2428--2462
Alexander Barabanschikov and
Jeremy Gunawardena Monostationarity and Multistationarity
in Tree Networks of Goldbeter--Koshland
Loops . . . . . . . . . . . . . . . . . 2463--2509
Caterina Vitale and
Alex Best The Impact of Selective Predation on
Host--Parasite SIS Dynamics . . . . . . 2510--2528
Biman Chakraborty and
Amiya Ranjan Bhowmick and
Joydev Chattopadhyay and
Sabyasachi Bhattacharya A Novel Unification Method to
Characterize a Broad Class of Growth
Curve Models Using Relative Growth Rate 2529--2552
James R. Moore and
Hasan Ahmed and
Don McGuire and
Rama Akondy and
Rafi Ahmed and
Rustom Antia Dependence of CD8 T Cell Response upon
Antigen Load During Primary Infection 2553--2568
Xiunan Wang and
Xingfu Zou Modeling the Potential Role of
Engineered Symbiotic Bacteria in Malaria
Control . . . . . . . . . . . . . . . . 2569--2595
Dan Li and
Hui Wan The Threshold Infection Level for
\bionameWolbachia Invasion in a Two-Sex
Mosquito Population Model . . . . . . . 2596--2624
Yang Cao and
Petzold Linda and
Effrosyni Seitaridou Stochastic Simulation of Biochemical
Systems: In Memory of Dan T. Gillespie's
contributions . . . . . . . . . . . . . 2819--2821
Ryan Suderman and
Eshan D. Mitra and
Yen Ting Lin and
Keesha E. Erickson and
Song Feng and
William S. Hlavacek Generalizing Gillespie's Direct Method
to Enable Network--Free Simulations . . 2822--2848
Muruhan Rathinam and
Yuriy Sverchkov Stochastic Dynamics of Eukaryotic
Flagellar Growth . . . . . . . . . . . . 2849--2872
Per Lötstedt The Linear Noise Approximation for
Spatially Dependent Biochemical Networks 2873--2901
David F. Anderson and
Chaojie Yuan Low Variance Couplings for Stochastic
Models of Intracellular Processes with
Time-Dependent Rate Functions . . . . . 2902--2930
Casper H. L. Beentjes and
Ruth E. Baker Quasi-Monte Carlo Methods Applied to
Tau-Leaping in Stochastic Biological
Systems . . . . . . . . . . . . . . . . 2931--2959
Stephen Smith and
Ramon Grima Spatial Stochastic Intracellular
Kinetics: a Review of Modelling
Approaches . . . . . . . . . . . . . . . 2960--3009
Stefan Engblom Stochastic Simulation of Pattern
Formation in Growing Tissue: a
Multilevel Approach . . . . . . . . . . 3010--3023
Minghan Chen and
Shuo Wang and
Yang Cao Accuracy Analysis of Hybrid Stochastic
Simulation Algorithm on Linear Chain
Reaction Systems . . . . . . . . . . . . 3024--3052
Vo Hong Thanh A Critical Comparison of Rejection-Based
Algorithms for Simulation of Large
Biochemical Reaction Networks . . . . . 3053--3073
Jana Lipková and
Georgios Arampatzis and
Philippe Chatelain and
Bjoern Menze and
Petros Koumoutsakos $S$-Leaping: an Adaptive, Accelerated
Stochastic Simulation Algorithm,
Bridging $ \tau $-Leaping and
$R$-Leaping . . . . . . . . . . . . . . 3074--3096
Min K. Roh Data-Driven Method for Efficient
Characterization of Rare Event
Probabilities in Biochemical Systems . . 3097--3120
Ankit Gupta and
Mustafa Khammash Sensitivity Analysis for Multiscale
Stochastic Reaction Networks Using
Hybrid Approximations . . . . . . . . . 3121--3158
P. A. Maginnis and
M. West and
G. E. Dullerud Exact Variance-Reduced Simulation of
Lattice Continuous--Time Markov Chains
with Applications in Reaction Networks 3159--3184
Hye-Won Kang and
Radek Erban Multiscale Stochastic
Reaction--Diffusion Algorithms Combining
Markov Chain Models with Stochastic
Partial Differential Equations . . . . . 3185--3213
Mark Alber and
Christophe Godin and
Philip K. Maini and
Roeland Merks and
Eric Mjolsness Introduction . . . . . . . . . . . . . . 3214--3218
Alexander Erlich and
Derek E. Moulton and
Alain Goriely Are Homeostatic States Stable? Dynamical
Stability in Morphoelasticity . . . . . 3219--3244
Mikahl Banwarth-Kuhn and
Ali Nematbakhsh and
Kevin W. Rodriguez and
Stephen Snipes and
Carolyn G. Rasmussen and
G. Venugopala Reddy and
Mark Alber Cell-based Model of the Generation and
Maintenance of the Shape and Structure
of the Multilayered Shoot Apical
Meristem of \bionameArabidopsis thaliana 3245--3281
J. Jiang and
K. Garikipati and
S. Rudraraju A Diffuse Interface Framework for
Modeling the Evolution of Multi-cell
Aggregates as a Soft Packing Problem
Driven by the Growth and Division of
Cells . . . . . . . . . . . . . . . . . 3282--3300
Abdel-Rahman Hassan and
Thomas Biel and
David M. Umulis and
Taeyoon Kim Interplay Between the Persistent Random
Walk and the Contact Inhibition of
Locomotion Leads to Collective Cell
Behaviors . . . . . . . . . . . . . . . 3301--3321
Helen Moore and
Richard Allen What Can Mathematics Do for Drug
Development? . . . . . . . . . . . . . . 3421--3424
Richard Allen and
Helen Moore Perspectives on the Role of Mathematics
in Drug Discovery and Development . . . 3425--3435
Xiaotian Wu and
Fahima Nekka and
Jun Li Analytical Solution and Exposure
Analysis of a Pharmacokinetic Model with
Simultaneous Elimination Pathways and
Endogenous Production: The Case of
Multiple Dosing Administration . . . . . 3436--3459
Jeffrey Saltzman and
Claus Bendtsen Modeling the Effect of Mucin Binding in
the Gut on Drug Delivery . . . . . . . . 3460--3476
E. Vendel and
V. Rottschäfer and
E. C. M. de Lange Improving the Prediction of Local Drug
Distribution Profiles in the Brain with
a New $2$D Mathematical Model . . . . . 3477--3507
Mika Naganawa and
Jean-Dominique Gallezot and
Samantha Rossano and
Richard E. Carson Quantitative PET Imaging in Drug
Development: Estimation of Target
Occupancy . . . . . . . . . . . . . . . 3508--3541
Carla White and
Lloyd J. Bridge Ligand Binding Dynamics for
Pre-dimerised G Protein-Coupled Receptor
Homodimers: Linear Models and Analytical
Solutions . . . . . . . . . . . . . . . 3542--3574
Vincent Lemaire and
David R. Cox Dynamics of Bone Cell Interactions and
Differential Responses to PTH and
Antibody-Based Therapies . . . . . . . . 3575--3622
Aleksandra Karolak and
Katarzyna A. Rejniak Micropharmacology: An In Silico Approach
for Assessing Drug Efficacy Within a
Tumor Tissue . . . . . . . . . . . . . . 3623--3641
Gilles Gnacadja An Invitation to Pharmacostatics . . . . 3642--3654
Christina Durón and
Yuan Pan and
David H. Gutmann and
Johanna Hardin and
Ami Radunskaya Variability of Betweenness Centrality
and Its Effect on Identifying Essential
Genes . . . . . . . . . . . . . . . . . 3655--3673
Vladimir Reinharz and
Alexander Churkin and
Stephanie Lewkiewicz and
Harel Dahari and
Danny Barash A Parameter Estimation Method for
Multiscale Models of Hepatitis C Virus
Dynamics . . . . . . . . . . . . . . . . 3675--3721
Renee Brady and
Heiko Enderling Mathematical Models of Cancer: When to
Predict Novel Therapies, and When Not to 3722--3731
Jason Callahan and
Eric Eager and
Richard Rebarber and
Eva Strawbridge and
Shenglan Yuan Analysis of a Length-Structured
Density-Dependent Model for Fish . . . . 3732--3753
M. C. Köhnke Invasion Dynamics in an Intraguild
Predation System with Predator-Induced
Defense . . . . . . . . . . . . . . . . 3754--3777
Simon J. Duncan and
Keith R. Daly and
Daniel M. McKay Fletcher and
Siul Ruiz and
Paul Sweeney and
Tiina Roose Multiple Scale Homogenisation of
Nutrient Movement and Crop Growth in
Partially Saturated Soil . . . . . . . . 3778--3802
Alexander L. Davis and
Alexander P. Hoover and
Laura A. Miller Lift and Drag Acting on the Shell of the
American Horseshoe Crab (\bionameLimulus
polyphemus) . . . . . . . . . . . . . . 3803--3822
Yukihiro Murakami and
Leo van Iersel and
Remie Janssen and
Mark Jones and
Vincent Moulton Reconstructing Tree--Child Networks from
Reticulate--Edge-Deleted Subnetworks . . 3823--3863
Artur César Fassoni and
Denis Carvalho Braga Resilience Analysis for Competing
Populations . . . . . . . . . . . . . . 3864--3888
Xiaoying Wang and
Messoud Efendiev and
Frithjof Lutscher How Spatial Heterogeneity Affects
Transient Behavior in
Reaction--Diffusion Systems for
Ecological Interactions? . . . . . . . . 3889--3917
Michael J. Plank and
Nick Stringer and
Shona L. Lamoureaux and
Graeme W. Bourdôt and
Alex James Limiting Effect of Self-Shading on the
Height of \bionameTradescantia
fluminensis Mats . . . . . . . . . . . . 3918--3932
James T. Cronin and
Jerome Goddard and
Ratnasingham Shivaji Effects of Patch-Matrix Composition and
Individual Movement Response on
Population Persistence at the Patch
Level . . . . . . . . . . . . . . . . . 3933--3975
Matthew T. Houston and
Juan B. Gutierrez The FRiND Model: A Mathematical Model
for Representing Macrophage Plasticity
in Muscular Dystrophy Pathogenesis . . . 3976--3997
Carlos Contreras and
Gustavo Carrero and
Gerda de Vries A Mathematical Model for the Effect of
Low-Dose Radiation on the G2/M
Transition . . . . . . . . . . . . . . . 3998--4021
Moritz P. Thon and
Mary R. Myerscough and
Michael W. Gee A Spatially Resolved and Quantitative
Model of Early Atherosclerosis . . . . . 4022--4068
Melanie A. Jensen and
Ying-Ying Wang and
Samuel K. Lai and
M. Gregory Forest and
Scott A. McKinley Antibody-Mediated Immobilization of
Virions in Mucus . . . . . . . . . . . . 4069--4099
Ariel Camacho and
Fernando Saldaña and
Ignacio Barradas and
Silvia Jerez Modeling Public Health Campaigns for
Sexually Transmitted Infections via
Optimal and Feedback Control . . . . . . 4100--4123
Anton Chizhov and
Fabien Campillo and
Mathieu Desroches and
Antoni Guillamon and
Serafim Rodrigues Conductance-Based Refractory Density
Approach for a Population of Bursting
Neurons . . . . . . . . . . . . . . . . 4124--4143
Paul A. Valle and
Luis N. Coria and
Yolocuauhtli Salazar Tumor Clearance Analysis on a Cancer
Chemo--Immunotherapy Mathematical Model 4144--4173
Carsten Conradi and
Alexandru Iosif and
Thomas Kahle Multistationarity in the Space of Total
Concentrations for Systems that Admit a
Monomial Parametrization . . . . . . . . 4174--4209
Alexandra Smirnova and
Benjamin Sirb and
Gerardo Chowell On Stable Parameter Estimation and
Forecasting in Epidemiology by the
Levenberg--Marquardt Algorithm with
Broyden's Rank-one Updates for the
Jacobian Operator . . . . . . . . . . . 4210--4232
Julien Arino and
James Watmough Current Trends in Mathematical
Epidemiology . . . . . . . . . . . . . . 4311--4312
Rachael M. Milwid and
Federico Frascoli and
Marc Steben and
Jane M. Heffernan HPV Screening and Vaccination Strategies
in an Unscreened Population: A
Mathematical Modeling Study . . . . . . 4313--4342
Alexandra Smirnova and
Linda deCamp and
Gerardo Chowell Forecasting Epidemics Through
Nonparametric Estimation of
Time--Dependent Transmission Rates Using
the SEIR Model . . . . . . . . . . . . . 4343--4365
Jean Claude Kamgang and
Christopher Penniman Thron Analysis of Malaria Control Measures'
Effectiveness Using Multistage Vector
Model . . . . . . . . . . . . . . . . . 4366--4411
P. van den Driessche and
Abdul-Aziz Yakubu Disease Extinction Versus Persistence in
Discrete-Time Epidemic Models . . . . . 4412--4446
Rocio Caja Rivera and
Ignacio Barradas Vector Preference Annihilates Backward
Bifurcation and Reduces Endemicity . . . 4447--4469
Camilo Sanabria Malagón and
Esteban Vargas Bernal Competent Hosts and Endemicity of
Multi-Host Vector-Borne Diseases . . . . 4470--4483
May Anne Mata and
Priscilla Greenwood and
Rebecca Tyson The Relative Contribution of Direct and
Environmental Transmission Routes in
Stochastic Avian Flu Epidemic
Recurrence: An Approximate Analysis . . 4484--4517
Prince Harvim and
Hong Zhang and
Paul Georgescu and
Lai Zhang Transmission Dynamics and Control
Mechanisms of Vector-Borne Diseases with
Active and Passive Movements Between
Urban and Satellite Cities . . . . . . . 4518--4563
Woldegebriel A. Woldegerima and
Miranda I. Teboh-Ewungkem and
Gideon A. Ngwa The Impact of Recruitment on the
Dynamics of an Immune-Suppressed
Within-Human--Host Model of the
\bionamePlasmodium falciparum Parasite 4564--4619
Andrew Morozov Modelling Biological Evolution:
Developing Novel Approaches . . . . . . 4620--4624
Fabio A. C. C. Chalub and
Max O. Souza From Fixation Probabilities to
$d$-player Games: An Inverse Problem in
Evolutionary Dynamics . . . . . . . . . 4625--4642
Mark Broom and
Karan Pattni and
Jan Rychtá\vr Generalized Social Dilemmas: The
Evolution of Cooperation in Populations
with Variable Group Size . . . . . . . . 4643--4674
Oleg Kuzenkov and
Andrew Morozov Towards the Construction of a
Mathematically Rigorous Framework for
the Modelling of Evolutionary Fitness 4675--4700
Simran Kaur Sandhu and
Andrew Morozov and
Oleg Kuzenkov Revealing Evolutionarily Optimal
Strategies in Self-Reproducing Systems
via a New Computational Approach . . . . 4701--4725
Chandani Dissanayake and
Lourdes Juan and
Kevin R. Long and
Angela Peace and
Md Masud Rana Genotypic Selection in Spatially
Heterogeneous Producer--Grazer Systems
Subject to Stoichiometric Constraints 4726--4742
Cordula Reisch and
Dirk Langemann Modeling the Chronification Tendency of
Liver Infections as Evolutionary
Advantage . . . . . . . . . . . . . . . 4743--4760
Cindy Gidoin and
Stephan Peischl Range Expansion Theories Could Shed
Light on the Spatial Structure of
Intra-tumour Heterogeneity . . . . . . . 4761--4777
Caterina Vitale and
Eva Kisdi Evolutionary Suicide of Prey: Matsuda
and Abrams' Model Revisited . . . . . . 4778--4802
Roger Cropp and
John Norbury Simulating Eco-evolutionary Processes in
an Obligate Pollination Model with a
Genetic Algorithm . . . . . . . . . . . 4803--4820
Hui Cao and
Dongxue Yan and
Suxia Zhang and
Xiaoqin Wang Analysis of Dynamics of Recurrent
Epidemics: Periodic or Non-periodic . . 4889--4907
P. Magal and
G. F. Webb and
Yixiang Wu An Environmental Model of Honey Bee
Colony Collapse Due to Pesticide
Contamination . . . . . . . . . . . . . 4908--4931
Angela Peace and
Hao Wang Compensatory Foraging in Stoichiometric
Producer--Grazer Models . . . . . . . . 4932--4950
Milen Borisov and
Gabriel Dimitriu and
Peter Rashkov Modelling the Host Immune Response to
Mature and Immature Dengue Viruses . . . 4951--4976
Dipo Aldila and
Hiromi Seno A Population Dynamics Model of
Mosquito-Borne Disease Transmission,
Focusing on Mosquitoes' Biased
Distribution and Mosquito Repellent Use 4977--5008
Zhi Zhou and
Robert A. Van Gorder Turing Instability and Colony Formation
in Spatially Extended
Rosenzweig--MacArthur Predator--Prey
Models with Allochthonous Resources . . 5009--5053
Léo Girardin and
Vincent Calvez and
Florence Débarre Catch Me If You Can: A Spatial Model for
a Brake-Driven Gene Drive Reversal . . . 5054--5088
R. Leander and
A. Friedman Correction to: Modulation of the cAMP
Response by $ G \alpha_i $ and $ G \beta
\gamma $: a Computational Study of $G$
Protein Signaling in Immune Cells . . . ??
Jason Callahan and
Eric Eager and
Shenglan Yuan Correction to: Analysis of a
Length-Structured Density-Dependent
Model for Fish . . . . . . . . . . . . . ??
A. M. Turing The chemical basis of morphogenesis . . 37--72